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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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|
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HOW TO USE
tRNA gene List
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170668463
LAFJ01004027
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
1
77
+
Ala
CGC
[ENA]
¢þ
>WENV170668461
LAFJ01001754
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
86
159
+
Gly
TCC
[ENA]
¢þ
>WENV170668464
LAFJ01005730
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
140
225
+
Ser
TGA
[ENA]
¢þ
>WENV170668472
LAFJ01016085
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
143
219
+
Arg
ACG
[ENA]
¢þ
>WENV170668471
LAFJ01013901
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
150
234
+
Leu
TAG
[ENA]
¢þ
>WENV170668462
LAFJ01001754
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
167
242
+
Thr
GGT
[ENA]
¢þ
>WENV170668466
LAFJ01007321
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
193
270
+
Gly
GCC
[ENA]
¢þ
>WENV170668473
LAFJ01016388
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
210
286
+
Glu
TTC
[ENA]
¢þ
>WENV170668474
LAFJ01019488
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
236
148
-
Ser
TGA
[ENA]
¢þ
>WENV170668470
LAFJ01010629
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
239
166
-
Cys
GCA
[ENA]
¢þ
>WENV170668468
LAFJ01008140
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
297
221
-
Trp
CCA
[ENA]
¢þ
>WENV170668467
LAFJ01008137
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
316
393
+
Arg
TCG
[ENA]
¢þ
>WENV170668469
LAFJ01008199
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
365
289
-
Met
CAT
[ENA]
¢þ
>WENV170668465
LAFJ01006730
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
366
283
-
Leu
TAG
[ENA]
¢þ
>WENV170668460
LAFJ01001055
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
720
796
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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