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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
HIT:
39 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170668534
LAFT01013456
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
6
82
+
Thr
TGT
[ENA]
¢þ
>WENV170668511
LAFT01002966
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
30
106
+
Arg
GCG
[ENA]
¢þ
>WENV170668539
LAFT01022860
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
71
146
+
Glu
TTC
[ENA]
¢þ
>WENV170668512
LAFT01002970
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
84
1
-
Leu
GAG
[ENA]
¢þ
>WENV170668530
LAFT01010975
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
94
19
-
Asn
GTT
[ENA]
¢þ
>WENV170668520
LAFT01006293
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
96
170
+
Asn
GTT
[ENA]
¢þ
>WENV170668535
LAFT01013456
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
110
183
+
Asn
GTT
[ENA]
¢þ
>WENV170668533
LAFT01013257
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
131
56
-
Glu
CTC
[ENA]
¢þ
>WENV170668540
LAFT01022860
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
161
236
+
Gly
GCC
[ENA]
¢þ
>WENV170668528
LAFT01010174
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
165
72
-
Tyr
GTA
[ENA]
¢þ
>WENV170668538
LAFT01017844
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
169
95
-
Leu
CAA
[ENA]
¢þ
>WENV170668536
LAFT01013456
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
184
259
+
Gln
CTG
[ENA]
¢þ
>WENV170668526
LAFT01008656
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
200
124
-
Met
CAT
[ENA]
¢þ
>WENV170668516
LAFT01004100
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
203
287
+
Leu
CAG
[ENA]
¢þ
>WENV170668529
LAFT01010186
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
224
300
+
Arg
TCT
[ENA]
¢þ
>WENV170668523
LAFT01007584
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
240
326
+
Leu
GAG
[ENA]
¢þ
>WENV170668521
LAFT01006868
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
250
323
+
Ile
GAT
[ENA]
¢þ
>WENV170668537
LAFT01016684
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
266
355
+
Ser
GGA
[ENA]
¢þ
>WENV170668532
LAFT01012852
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
280
352
+
Gly
TCC
[ENA]
¢þ
>WENV170668515
LAFT01003839
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
305
229
-
Met
CAT
[ENA]
¢þ
>WENV170668531
LAFT01011195
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
324
250
-
Gln
CTG
[ENA]
¢þ
>WENV170668509
LAFT01002694
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
350
276
-
Thr
TGT
[ENA]
¢þ
>WENV170668507
LAFT01001520
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
354
427
+
Cys
GCA
[ENA]
¢þ
>WENV170668522
LAFT01007220
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
363
289
-
Gln
CTG
[ENA]
¢þ
>WENV170668504
LAFT01000428
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
381
457
+
Arg
CCG
[ENA]
¢þ
>WENV170668524
LAFT01008370
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
400
328
-
Val
GAC
[ENA]
¢þ
>WENV170668525
LAFT01008629
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
441
370
-
Lys
TTT
[ENA]
¢þ
>WENV170668527
LAFT01009396
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
444
374
-
Asp
GTC
[ENA]
¢þ
>WENV170668514
LAFT01003786
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
446
370
-
Thr
GGT
[ENA]
¢þ
>WENV170668519
LAFT01005924
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
452
376
-
Met
CAT
[ENA]
¢þ
>WENV170668513
LAFT01003041
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
510
594
+
Ser
CGA
[ENA]
¢þ
>WENV170668505
LAFT01000564
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
549
626
+
Glu
CTC
[ENA]
¢þ
>WENV170668518
LAFT01004878
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
559
487
-
Asn
GTT
[ENA]
¢þ
>WENV170668506
LAFT01001089
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
570
499
-
Ala
CGC
[ENA]
¢þ
>WENV170668517
LAFT01004644
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
579
503
-
Glu
TTC
[ENA]
¢þ
>WENV170668508
LAFT01002600
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
609
538
-
Ala
CGC
[ENA]
¢þ
>WENV170668510
LAFT01002733
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
732
656
-
Trp
CCA
[ENA]
¢þ
>WENV170668503
LAFT01000259
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
1153
1228
+
Val
CAC
[ENA]
¢þ
>WENV170668502
LAFT01000062
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
1357
1432
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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