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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
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|
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HOW TO USE
tRNA gene List
[LDZP] terrestrial metagenome; oil reservoir sample I1
HIT:
120 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170675670
LDZP01000247
[LDZP] terrestrial metagenome; oil reservoir sample I1
24
98
+
Asn
GTT
[ENA]
¢þ
>WENV170675558
LDZP01000002
[LDZP] terrestrial metagenome; oil reservoir sample I1
54
138
+
Leu
TAG
[ENA]
¢þ
>WENV170675671
LDZP01000247
[LDZP] terrestrial metagenome; oil reservoir sample I1
112
186
+
Gly
CCC
[ENA]
¢þ
>WENV170675675
LDZP01000340
[LDZP] terrestrial metagenome; oil reservoir sample I1
240
164
-
Met
CAT
[ENA]
¢þ
>WENV170675668
LDZP01000193
[LDZP] terrestrial metagenome; oil reservoir sample I1
487
412
-
Thr
GGT
[ENA]
¢þ
>WENV170675559
LDZP01000010
[LDZP] terrestrial metagenome; oil reservoir sample I1
668
592
-
Val
CAC
[ENA]
¢þ
>WENV170675677
LDZP01000426
[LDZP] terrestrial metagenome; oil reservoir sample I1
814
738
-
Met
CAT
[ENA]
¢þ
>WENV170675676
LDZP01000426
[LDZP] terrestrial metagenome; oil reservoir sample I1
997
912
-
Leu
GAG
[ENA]
¢þ
>WENV170675565
LDZP01000074
[LDZP] terrestrial metagenome; oil reservoir sample I1
1194
1270
+
Arg
CCT
[ENA]
¢þ
>WENV170675672
LDZP01000256
[LDZP] terrestrial metagenome; oil reservoir sample I1
1241
1166
-
Trp
CCA
[ENA]
¢þ
>WENV170675674
LDZP01000271
[LDZP] terrestrial metagenome; oil reservoir sample I1
1474
1399
-
Ala
TGC
[ENA]
¢þ
>WENV170675673
LDZP01000271
[LDZP] terrestrial metagenome; oil reservoir sample I1
1573
1497
-
Ile
GAT
[ENA]
¢þ
>WENV170675669
LDZP01000224
[LDZP] terrestrial metagenome; oil reservoir sample I1
1630
1704
+
Pro
CGG
[ENA]
¢þ
>WENV170675666
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
1983
1908
-
Lys
CTT
[ENA]
¢þ
>WENV170675618
LDZP01000113
[LDZP] terrestrial metagenome; oil reservoir sample I1
2084
2009
-
Thr
TGT
[ENA]
¢þ
>WENV170675665
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
2097
2021
-
Arg
TCG
[ENA]
¢þ
>WENV170675664
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
2187
2112
-
Gly
GCC
[ENA]
¢þ
>WENV170675617
LDZP01000113
[LDZP] terrestrial metagenome; oil reservoir sample I1
2231
2157
-
Gln
TTG
[ENA]
¢þ
>WENV170675564
LDZP01000040
[LDZP] terrestrial metagenome; oil reservoir sample I1
2257
2182
-
Ala
TGC
[ENA]
¢þ
>WENV170675616
LDZP01000113
[LDZP] terrestrial metagenome; oil reservoir sample I1
2313
2238
-
Phe
GAA
[ENA]
¢þ
>WENV170675563
LDZP01000040
[LDZP] terrestrial metagenome; oil reservoir sample I1
2355
2279
-
Ile
GAT
[ENA]
¢þ
>WENV170675631
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
2954
3029
+
Val
TAC
[ENA]
¢þ
>WENV170675632
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
3031
3107
+
Asp
GTC
[ENA]
¢þ
>WENV170675633
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
3113
3188
+
Phe
GAA
[ENA]
¢þ
>WENV170675560
LDZP01000018
[LDZP] terrestrial metagenome; oil reservoir sample I1
3194
3266
+
Val
TAC
[ENA]
¢þ
>WENV170675634
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
3194
3269
+
Gly
GCC
[ENA]
¢þ
>WENV170675561
LDZP01000018
[LDZP] terrestrial metagenome; oil reservoir sample I1
3269
3344
+
Asp
GTC
[ENA]
¢þ
>WENV170675635
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
3274
3348
+
Cys
GCA
[ENA]
¢þ
>WENV170675620
LDZP01000146
[LDZP] terrestrial metagenome; oil reservoir sample I1
3279
3203
-
Met
CAT
[ENA]
¢þ
>WENV170675562
LDZP01000018
[LDZP] terrestrial metagenome; oil reservoir sample I1
3360
3432
+
Lys
TTT
[ENA]
¢þ
>WENV170675619
LDZP01000133
[LDZP] terrestrial metagenome; oil reservoir sample I1
5043
4967
-
Arg
CCG
[ENA]
¢þ
>WENV170675600
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
8982
8906
-
Asp
GTC
[ENA]
¢þ
>WENV170675599
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
9102
9027
-
Val
TAC
[ENA]
¢þ
>WENV170675611
LDZP01000093
[LDZP] terrestrial metagenome; oil reservoir sample I1
9114
9190
+
Val
GAC
[ENA]
¢þ
>WENV170675598
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
9228
9152
-
Asp
GTC
[ENA]
¢þ
>WENV170675612
LDZP01000093
[LDZP] terrestrial metagenome; oil reservoir sample I1
9272
9348
+
Val
GAC
[ENA]
¢þ
>WENV170675597
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
9339
9263
-
Asp
GTC
[ENA]
¢þ
>WENV170675596
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
9463
9388
-
Val
TAC
[ENA]
¢þ
>WENV170675570
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
10213
10288
+
Ala
GGC
[ENA]
¢þ
>WENV170675606
LDZP01000091
[LDZP] terrestrial metagenome; oil reservoir sample I1
10303
10217
-
Leu
CAA
[ENA]
¢þ
>WENV170675571
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
10320
10395
+
Glu
TTC
[ENA]
¢þ
>WENV170675613
LDZP01000097
[LDZP] terrestrial metagenome; oil reservoir sample I1
12352
12262
-
Ser
TGA
[ENA]
¢þ
>WENV170675590
LDZP01000081
[LDZP] terrestrial metagenome; oil reservoir sample I1
13599
13523
-
Pro
GGG
[ENA]
¢þ
>WENV170675663
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
16659
16573
-
Leu
CAG
[ENA]
¢þ
>WENV170675662
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
16768
16693
-
Lys
TTT
[ENA]
¢þ
>WENV170675657
LDZP01000189
[LDZP] terrestrial metagenome; oil reservoir sample I1
16798
16874
+
Arg
CCT
[ENA]
¢þ
>WENV170675661
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
16861
16787
-
Gln
TTG
[ENA]
¢þ
>WENV170675660
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
16941
16865
-
His
GTG
[ENA]
¢þ
>WENV170675659
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
17029
16953
-
Arg
TCT
[ENA]
¢þ
>WENV170675667
LDZP01000191
[LDZP] terrestrial metagenome; oil reservoir sample I1
17066
17141
+
Pro
GGG
[ENA]
¢þ
>WENV170675658
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
17106
17033
-
Gly
TCC
[ENA]
¢þ
>WENV170675646
LDZP01000178
[LDZP] terrestrial metagenome; oil reservoir sample I1
18928
18854
-
Glu
TTC
[ENA]
¢þ
>WENV170675653
LDZP01000184
[LDZP] terrestrial metagenome; oil reservoir sample I1
21175
21249
+
Asn
GTT
[ENA]
¢þ
>WENV170675654
LDZP01000184
[LDZP] terrestrial metagenome; oil reservoir sample I1
21256
21331
+
Met
CAT
[ENA]
¢þ
>WENV170675656
LDZP01000186
[LDZP] terrestrial metagenome; oil reservoir sample I1
23750
23825
+
Ala
GGC
[ENA]
¢þ
>WENV170675636
LDZP01000170
[LDZP] terrestrial metagenome; oil reservoir sample I1
24264
24339
+
Ala
TGC
[ENA]
¢þ
>WENV170675630
LDZP01000169
[LDZP] terrestrial metagenome; oil reservoir sample I1
24957
24873
-
Leu
GAG
[ENA]
¢þ
>WENV170675644
LDZP01000175
[LDZP] terrestrial metagenome; oil reservoir sample I1
25166
25239
+
Gln
CTG
[ENA]
¢þ
>WENV170675645
LDZP01000175
[LDZP] terrestrial metagenome; oil reservoir sample I1
25244
25319
+
Glu
CTC
[ENA]
¢þ
>WENV170675655
LDZP01000184
[LDZP] terrestrial metagenome; oil reservoir sample I1
25537
25613
+
Val
GAC
[ENA]
¢þ
>WENV170675647
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
27399
27488
+
Ser
TGA
[ENA]
¢þ
>WENV170675648
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
27522
27615
+
Ser
GCT
[ENA]
¢þ
>WENV170675649
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
27802
27878
+
Arg
ACG
[ENA]
¢þ
>WENV170675650
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
29679
29769
+
Ser
CGA
[ENA]
¢þ
>WENV170675651
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
29784
29877
+
Ser
GGA
[ENA]
¢þ
>WENV170675640
LDZP01000172
[LDZP] terrestrial metagenome; oil reservoir sample I1
31225
31300
+
Thr
TGT
[ENA]
¢þ
>WENV170675615
LDZP01000100
[LDZP] terrestrial metagenome; oil reservoir sample I1
34512
34436
-
Met
CAT
[ENA]
¢þ
>WENV170675652
LDZP01000180
[LDZP] terrestrial metagenome; oil reservoir sample I1
34660
34572
-
Leu
CAA
[ENA]
¢þ
>WENV170675614
LDZP01000100
[LDZP] terrestrial metagenome; oil reservoir sample I1
34844
34758
-
Leu
GAG
[ENA]
¢þ
>WENV170675601
LDZP01000089
[LDZP] terrestrial metagenome; oil reservoir sample I1
40946
41021
+
Asn
GTT
[ENA]
¢þ
>WENV170675602
LDZP01000089
[LDZP] terrestrial metagenome; oil reservoir sample I1
41132
41207
+
Asn
GTT
[ENA]
¢þ
>WENV170675603
LDZP01000089
[LDZP] terrestrial metagenome; oil reservoir sample I1
41286
41361
+
Asn
GTT
[ENA]
¢þ
>WENV170675605
LDZP01000089
[LDZP] terrestrial metagenome; oil reservoir sample I1
45786
45710
-
Met
CAT
[ENA]
¢þ
>WENV170675641
LDZP01000174
[LDZP] terrestrial metagenome; oil reservoir sample I1
47719
47808
+
Leu
TAA
[ENA]
¢þ
>WENV170675642
LDZP01000174
[LDZP] terrestrial metagenome; oil reservoir sample I1
47813
47889
+
Met
CAT
[ENA]
¢þ
>WENV170675643
LDZP01000174
[LDZP] terrestrial metagenome; oil reservoir sample I1
47897
47973
+
Met
CAT
[ENA]
¢þ
>WENV170675604
LDZP01000089
[LDZP] terrestrial metagenome; oil reservoir sample I1
49698
49624
-
Gln
TTG
[ENA]
¢þ
>WENV170675582
LDZP01000077
[LDZP] terrestrial metagenome; oil reservoir sample I1
55858
55783
-
Trp
CCA
[ENA]
¢þ
>WENV170675581
LDZP01000077
[LDZP] terrestrial metagenome; oil reservoir sample I1
56115
56041
-
Thr
GGT
[ENA]
¢þ
>WENV170675580
LDZP01000077
[LDZP] terrestrial metagenome; oil reservoir sample I1
56203
56130
-
Gly
TCC
[ENA]
¢þ
>WENV170675579
LDZP01000077
[LDZP] terrestrial metagenome; oil reservoir sample I1
56397
56314
-
Tyr
GTA
[ENA]
¢þ
>WENV170675595
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
57508
57433
-
Lys
TTT
[ENA]
¢þ
>WENV170675594
LDZP01000084
[LDZP] terrestrial metagenome; oil reservoir sample I1
57658
57583
-
Lys
TTT
[ENA]
¢þ
>WENV170675637
LDZP01000171
[LDZP] terrestrial metagenome; oil reservoir sample I1
58425
58500
+
Pro
TGG
[ENA]
¢þ
>WENV170675638
LDZP01000171
[LDZP] terrestrial metagenome; oil reservoir sample I1
58505
58580
+
Val
TAC
[ENA]
¢þ
>WENV170675639
LDZP01000171
[LDZP] terrestrial metagenome; oil reservoir sample I1
58602
58687
+
Tyr
GTA
[ENA]
¢þ
>WENV170675610
LDZP01000092
[LDZP] terrestrial metagenome; oil reservoir sample I1
59635
59549
-
Leu
TAA
[ENA]
¢þ
>WENV170675609
LDZP01000092
[LDZP] terrestrial metagenome; oil reservoir sample I1
59808
59735
-
Cys
GCA
[ENA]
¢þ
>WENV170675608
LDZP01000092
[LDZP] terrestrial metagenome; oil reservoir sample I1
59894
59820
-
Gly
GCC
[ENA]
¢þ
>WENV170675607
LDZP01000092
[LDZP] terrestrial metagenome; oil reservoir sample I1
63342
63417
+
Ala
GGC
[ENA]
¢þ
>WENV170675586
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
65928
65854
-
His
GTG
[ENA]
¢þ
>WENV170675585
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
66037
65963
-
His
GTG
[ENA]
¢þ
>WENV170675584
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
66206
66130
-
Arg
TCT
[ENA]
¢þ
>WENV170675583
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
66373
66297
-
Pro
TGG
[ENA]
¢þ
>WENV170675591
LDZP01000083
[LDZP] terrestrial metagenome; oil reservoir sample I1
73418
73504
+
Leu
CAG
[ENA]
¢þ
>WENV170675592
LDZP01000083
[LDZP] terrestrial metagenome; oil reservoir sample I1
73653
73739
+
Leu
CAG
[ENA]
¢þ
>WENV170675593
LDZP01000083
[LDZP] terrestrial metagenome; oil reservoir sample I1
73831
73917
+
Leu
CAG
[ENA]
¢þ
>WENV170675589
LDZP01000081
[LDZP] terrestrial metagenome; oil reservoir sample I1
77325
77409
+
Leu
TAG
[ENA]
¢þ
>WENV170675572
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
84390
84465
+
Glu
TTC
[ENA]
¢þ
>WENV170675573
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
84489
84563
+
Gly
GCC
[ENA]
¢þ
>WENV170675574
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
84585
84660
+
Glu
TTC
[ENA]
¢þ
>WENV170675575
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
84706
84780
+
Gly
GCC
[ENA]
¢þ
>WENV170675576
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
84800
84875
+
Glu
TTC
[ENA]
¢þ
>WENV170675577
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
84904
84978
+
Gly
GCC
[ENA]
¢þ
>WENV170675578
LDZP01000076
[LDZP] terrestrial metagenome; oil reservoir sample I1
89034
89121
+
Ser
GGA
[ENA]
¢þ
>WENV170675588
LDZP01000080
[LDZP] terrestrial metagenome; oil reservoir sample I1
93269
93345
+
Pro
CGG
[ENA]
¢þ
>WENV170675621
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
102480
102555
+
Arg
CCG
[ENA]
¢þ
>WENV170675566
LDZP01000075
[LDZP] terrestrial metagenome; oil reservoir sample I1
109399
109475
+
Met
CAT
[ENA]
¢þ
>WENV170675587
LDZP01000079
[LDZP] terrestrial metagenome; oil reservoir sample I1
115604
115680
+
Met
CAT
[ENA]
¢þ
>WENV170675567
LDZP01000075
[LDZP] terrestrial metagenome; oil reservoir sample I1
161295
161387
+
Ser
GCT
[ENA]
¢þ
>WENV170675568
LDZP01000075
[LDZP] terrestrial metagenome; oil reservoir sample I1
161407
161483
+
Arg
ACG
[ENA]
¢þ
>WENV170675569
LDZP01000075
[LDZP] terrestrial metagenome; oil reservoir sample I1
161585
161661
+
Arg
ACG
[ENA]
¢þ
>WENV170675629
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
226822
226747
-
Lys
TTT
[ENA]
¢þ
>WENV170675628
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
226911
226826
-
Tyr
GTA
[ENA]
¢þ
>WENV170675627
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229104
229030
-
Thr
CGT
[ENA]
¢þ
>WENV170675626
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229208
229133
-
Phe
GAA
[ENA]
¢þ
>WENV170675625
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229294
229218
-
Asp
GTC
[ENA]
¢þ
>WENV170675624
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229395
229320
-
Met
CAT
[ENA]
¢þ
>WENV170675623
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229479
229405
-
Glu
TTC
[ENA]
¢þ
>WENV170675622
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
229560
229486
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK