This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
HIT:
91 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170704759
LLEM01007351
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
13
88
+
Phe
GAA
[ENA]
¢þ
>WENV170704776
LLEM01011408
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
17
92
+
Lys
TTT
[ENA]
¢þ
>WENV170704764
LLEM01008074
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
21
96
+
Arg
TCT
[ENA]
¢þ
>WENV170704773
LLEM01011039
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
41
116
+
Ala
GGC
[ENA]
¢þ
>WENV170704756
LLEM01006036
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
68
142
+
Gln
TTG
[ENA]
¢þ
>WENV170704775
LLEM01011399
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
73
-1
-
Ile
GAT
[ENA]
¢þ
>WENV170704722
LLEM01000887
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
73
146
+
Gly
TCC
[ENA]
¢þ
>WENV170704715
LLEM01000361
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
81
-1
-
Leu
CAA
[ENA]
¢þ
>WENV170704769
LLEM01009655
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
94
183
+
Ser
GCT
[ENA]
¢þ
>WENV170704772
LLEM01010708
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
95
171
+
Pro
TGG
[ENA]
¢þ
>WENV170704741
LLEM01002402
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
105
26
-
Asp
GTC
[ENA]
¢þ
>WENV170704770
LLEM01009714
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
107
31
-
Ile
GAT
[ENA]
¢þ
>WENV170704765
LLEM01008074
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
111
187
+
Val
TAC
[ENA]
¢þ
>WENV170704693
LLEM01000054
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
113
37
-
Val
GAC
[ENA]
¢þ
>WENV170704767
LLEM01008112
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
118
44
-
Gln
TTG
[ENA]
¢þ
>WENV170704777
LLEM01011408
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
121
197
+
Val
TAC
[ENA]
¢þ
>WENV170704774
LLEM01011252
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
126
42
-
Leu
TAA
[ENA]
¢þ
>WENV170704771
LLEM01010460
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
131
53
-
Asp
GTC
[ENA]
¢þ
>WENV170704733
LLEM01001366
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
131
56
-
Gly
GCC
[ENA]
¢þ
>WENV170704760
LLEM01007351
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
131
208
+
Asn
GTT
[ENA]
¢þ
>WENV170704763
LLEM01007595
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
140
65
-
His
GTG
[ENA]
¢þ
>WENV170704768
LLEM01008983
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
164
89
-
Thr
GGT
[ENA]
¢þ
>WENV170704723
LLEM01000887
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
166
241
+
Thr
GGT
[ENA]
¢þ
>WENV170704729
LLEM01001052
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
197
121
-
Ile
GAT
[ENA]
¢þ
>WENV170704740
LLEM01002402
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
198
123
-
Val
TAC
[ENA]
¢þ
>WENV170704757
LLEM01006036
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
199
283
+
Leu
TAG
[ENA]
¢þ
>WENV170704746
LLEM01002895
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
219
295
+
Met
CAT
[ENA]
¢þ
>WENV170704762
LLEM01007501
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
225
140
-
Tyr
GTA
[ENA]
¢þ
>WENV170704732
LLEM01001366
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
230
150
-
Met
CAT
[ENA]
¢þ
>WENV170704755
LLEM01005613
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
241
162
-
Val
GAC
[ENA]
¢þ
>WENV170704761
LLEM01007351
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
253
328
+
Thr
TGT
[ENA]
¢þ
>WENV170704766
LLEM01008112
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
257
173
-
Leu
TAG
[ENA]
¢þ
>WENV170704731
LLEM01001311
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
268
195
-
Cys
GCA
[ENA]
¢þ
>WENV170704758
LLEM01006552
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
277
354
+
Ala
GGC
[ENA]
¢þ
>WENV170704754
LLEM01005005
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
286
372
+
Leu
TAA
[ENA]
¢þ
>WENV170704716
LLEM01000425
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
296
370
+
Trp
CCA
[ENA]
¢þ
>WENV170704744
LLEM01002610
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
315
391
+
Met
CAT
[ENA]
¢þ
>WENV170704739
LLEM01002175
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
350
426
+
Arg
CCG
[ENA]
¢þ
>WENV170704748
LLEM01003172
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
378
453
+
Phe
GAA
[ENA]
¢þ
>WENV170704750
LLEM01004463
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
400
474
+
Val
GAC
[ENA]
¢þ
>WENV170704752
LLEM01004878
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
470
545
+
Val
TAC
[ENA]
¢þ
>WENV170704749
LLEM01003794
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
488
574
+
Leu
CAA
[ENA]
¢þ
>WENV170704753
LLEM01004896
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
494
420
-
Trp
CCA
[ENA]
¢þ
>WENV170704751
LLEM01004802
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
513
588
+
Arg
ACG
[ENA]
¢þ
>WENV170704747
LLEM01003019
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
584
671
+
Ser
TGA
[ENA]
¢þ
>WENV170704714
LLEM01000359
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
591
667
+
Arg
CCT
[ENA]
¢þ
>WENV170704742
LLEM01002419
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
601
512
-
Ser
GGA
[ENA]
¢þ
>WENV170704735
LLEM01001489
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
641
717
+
Met
CAT
[ENA]
¢þ
>WENV170704712
LLEM01000316
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
769
692
-
His
GTG
[ENA]
¢þ
>WENV170704743
LLEM01002562
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
823
899
+
Met
CAT
[ENA]
¢þ
>WENV170704711
LLEM01000316
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
875
799
-
Arg
TCT
[ENA]
¢þ
>WENV170704745
LLEM01002631
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
950
1025
+
Thr
TGT
[ENA]
¢þ
>WENV170704734
LLEM01001439
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1027
1111
+
Leu
CAA
[ENA]
¢þ
>WENV170704738
LLEM01002160
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1051
976
-
Thr
TGT
[ENA]
¢þ
>WENV170704710
LLEM01000316
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1187
1111
-
Pro
TGG
[ENA]
¢þ
>WENV170704736
LLEM01001868
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1211
1136
-
Thr
GGT
[ENA]
¢þ
>WENV170704737
LLEM01002160
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1238
1163
-
Phe
GAA
[ENA]
¢þ
>WENV170704709
LLEM01000316
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1311
1233
-
His
GTG
[ENA]
¢þ
>WENV170704721
LLEM01000807
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1348
1424
+
Gln
TTG
[ENA]
¢þ
>WENV170704730
LLEM01001088
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1424
1350
-
Trp
CCA
[ENA]
¢þ
>WENV170704725
LLEM01000918
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1517
1592
+
Lys
TTT
[ENA]
¢þ
>WENV170704708
LLEM01000316
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1564
1488
-
Pro
TGG
[ENA]
¢þ
>WENV170704724
LLEM01000887
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1581
1659
+
Trp
CCA
[ENA]
¢þ
>WENV170704726
LLEM01000918
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
1896
1971
+
Lys
TTT
[ENA]
¢þ
>WENV170704728
LLEM01001010
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2079
2154
+
Asn
GTT
[ENA]
¢þ
>WENV170704719
LLEM01000654
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2126
2049
-
Ile
GAT
[ENA]
¢þ
>WENV170704727
LLEM01000918
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2166
2241
+
Lys
TTT
[ENA]
¢þ
>WENV170704718
LLEM01000654
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2229
2154
-
Ala
TGC
[ENA]
¢þ
>WENV170704720
LLEM01000697
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
2702
2627
-
Ala
TGC
[ENA]
¢þ
>WENV170704706
LLEM01000190
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3449
3359
-
Ser
TGA
[ENA]
¢þ
>WENV170704717
LLEM01000471
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
4022
4109
+
Ser
GGA
[ENA]
¢þ
>WENV170704700
LLEM01000126
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
4367
4291
-
Met
CAT
[ENA]
¢þ
>WENV170704713
LLEM01000340
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
6228
6155
-
Cys
GCA
[ENA]
¢þ
>WENV170704707
LLEM01000261
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
8761
8684
-
Asp
GTC
[ENA]
¢þ
>WENV170704697
LLEM01000086
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
9742
9815
+
Met
CAT
[ENA]
¢þ
>WENV170704699
LLEM01000115
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
9785
9861
+
Arg
TCT
[ENA]
¢þ
>WENV170704696
LLEM01000068
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
9937
10027
+
Ser
TGA
[ENA]
¢þ
>WENV170704701
LLEM01000175
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
11571
11647
+
Arg
CCG
[ENA]
¢þ
>WENV170704702
LLEM01000175
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
11678
11754
+
His
GTG
[ENA]
¢þ
>WENV170704703
LLEM01000175
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
11827
11903
+
Pro
TGG
[ENA]
¢þ
>WENV170704704
LLEM01000175
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
11946
12021
+
His
GTG
[ENA]
¢þ
>WENV170704705
LLEM01000175
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
12093
12169
+
Pro
TGG
[ENA]
¢þ
>WENV170704698
LLEM01000093
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
12821
12894
+
Cys
GCA
[ENA]
¢þ
>WENV170704694
LLEM01000059
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
14226
14313
+
Ser
GGA
[ENA]
¢þ
>WENV170704692
LLEM01000037
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
24320
24230
-
Ser
TGA
[ENA]
¢þ
>WENV170704695
LLEM01000064
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
24448
24372
-
Arg
ACG
[ENA]
¢þ
>WENV170704691
LLEM01000030
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
32661
32586
-
Thr
TGT
[ENA]
¢þ
>WENV170704690
LLEM01000030
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
32813
32736
-
Asn
GTT
[ENA]
¢þ
>WENV170704687
LLEM01000011
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
38709
38784
+
Ala
GGC
[ENA]
¢þ
>WENV170704689
LLEM01000014
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
39039
38962
-
Trp
CCA
[ENA]
¢þ
>WENV170704688
LLEM01000011
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
39100
39024
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK