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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[LNFX] marine sediment metagenome; antarctic beach sand mud
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180042166
LNFX01001535
[LNFX] marine sediment metagenome; antarctic beach sand mud
1
76
+
Val
GAC
[ENA]
¢þ
>WENV180042193
LNFX01003820
[LNFX] marine sediment metagenome; antarctic beach sand mud
2
78
+
Arg
CCG
[ENA]
¢þ
>WENV180042123
LNFX01000082
[LNFX] marine sediment metagenome; antarctic beach sand mud
5
81
+
fMet
CAT
[ENA]
¢þ
>WENV180042164
LNFX01001444
[LNFX] marine sediment metagenome; antarctic beach sand mud
7
82
+
Val
TAC
[ENA]
¢þ
>WENV180042159
LNFX01001241
[LNFX] marine sediment metagenome; antarctic beach sand mud
11
87
+
fMet
CAT
[ENA]
¢þ
>WENV180042174
LNFX01002001
[LNFX] marine sediment metagenome; antarctic beach sand mud
14
89
+
Phe
GAA
[ENA]
¢þ
>WENV180042203
LNFX01004419
[LNFX] marine sediment metagenome; antarctic beach sand mud
17
91
+
Thr
CGT
[ENA]
¢þ
>WENV180042143
LNFX01000634
[LNFX] marine sediment metagenome; antarctic beach sand mud
32
107
+
Val
GAC
[ENA]
¢þ
>WENV180042137
LNFX01000438
[LNFX] marine sediment metagenome; antarctic beach sand mud
61
137
+
Val
GAC
[ENA]
¢þ
>WENV180042152
LNFX01001047
[LNFX] marine sediment metagenome; antarctic beach sand mud
76
2
-
Gly
GCC
[ENA]
¢þ
>WENV180042139
LNFX01000494
[LNFX] marine sediment metagenome; antarctic beach sand mud
76
152
+
Asp
GTC
[ENA]
¢þ
>WENV180042191
LNFX01003478
[LNFX] marine sediment metagenome; antarctic beach sand mud
80
4
-
Thr
TGT
[ENA]
¢þ
>WENV180042207
LNFX01004612
[LNFX] marine sediment metagenome; antarctic beach sand mud
92
16
-
Arg
ACG
[ENA]
¢þ
>WENV180042170
LNFX01001788
[LNFX] marine sediment metagenome; antarctic beach sand mud
106
179
+
Cys
GCA
[ENA]
¢þ
>WENV180042205
LNFX01004546
[LNFX] marine sediment metagenome; antarctic beach sand mud
108
32
-
fMet
CAT
[ENA]
¢þ
>WENV180042181
LNFX01002567
[LNFX] marine sediment metagenome; antarctic beach sand mud
124
199
+
His
GTG
[ENA]
¢þ
>WENV180042147
LNFX01000710
[LNFX] marine sediment metagenome; antarctic beach sand mud
125
41
-
Leu
CAA
[ENA]
¢þ
>WENV180042157
LNFX01001121
[LNFX] marine sediment metagenome; antarctic beach sand mud
125
41
-
Leu
CAA
[ENA]
¢þ
>WENV180042171
LNFX01001813
[LNFX] marine sediment metagenome; antarctic beach sand mud
129
205
+
Arg
CCG
[ENA]
¢þ
>WENV180042158
LNFX01001179
[LNFX] marine sediment metagenome; antarctic beach sand mud
129
213
+
Leu
CAA
[ENA]
¢þ
>WENV180042163
LNFX01001290
[LNFX] marine sediment metagenome; antarctic beach sand mud
158
233
+
Trp
CCA
[ENA]
¢þ
>WENV180042190
LNFX01003478
[LNFX] marine sediment metagenome; antarctic beach sand mud
170
94
-
Pro
GGG
[ENA]
¢þ
>WENV180042206
LNFX01004612
[LNFX] marine sediment metagenome; antarctic beach sand mud
191
101
-
Ser
GCT
[ENA]
¢þ
>WENV180042146
LNFX01000660
[LNFX] marine sediment metagenome; antarctic beach sand mud
193
118
-
Val
TAC
[ENA]
¢þ
>WENV180042140
LNFX01000494
[LNFX] marine sediment metagenome; antarctic beach sand mud
210
285
+
Val
TAC
[ENA]
¢þ
>WENV180042200
LNFX01004214
[LNFX] marine sediment metagenome; antarctic beach sand mud
222
298
+
Arg
TCT
[ENA]
¢þ
>WENV180042148
LNFX01000719
[LNFX] marine sediment metagenome; antarctic beach sand mud
233
149
-
Leu
TAG
[ENA]
¢þ
>WENV180042202
LNFX01004374
[LNFX] marine sediment metagenome; antarctic beach sand mud
246
171
-
Phe
GAA
[ENA]
¢þ
>WENV180042197
LNFX01003936
[LNFX] marine sediment metagenome; antarctic beach sand mud
270
344
+
Gln
TTG
[ENA]
¢þ
>WENV180042204
LNFX01004546
[LNFX] marine sediment metagenome; antarctic beach sand mud
271
186
-
Leu
GAG
[ENA]
¢þ
>WENV180042153
LNFX01001072
[LNFX] marine sediment metagenome; antarctic beach sand mud
279
355
+
Ile2
CAT
[ENA]
¢þ
>WENV180042142
LNFX01000553
[LNFX] marine sediment metagenome; antarctic beach sand mud
298
373
+
Ala
TGC
[ENA]
¢þ
>WENV180042192
LNFX01003513
[LNFX] marine sediment metagenome; antarctic beach sand mud
301
376
+
Gly
TCC
[ENA]
¢þ
>WENV180042185
LNFX01002768
[LNFX] marine sediment metagenome; antarctic beach sand mud
303
227
-
Arg
ACG
[ENA]
¢þ
>WENV180042208
LNFX01004908
[LNFX] marine sediment metagenome; antarctic beach sand mud
318
243
-
Trp
CCA
[ENA]
¢þ
>WENV180042145
LNFX01000660
[LNFX] marine sediment metagenome; antarctic beach sand mud
320
245
-
Thr
TGT
[ENA]
¢þ
>WENV180042195
LNFX01003868
[LNFX] marine sediment metagenome; antarctic beach sand mud
336
412
+
Val
GAC
[ENA]
¢þ
>WENV180042175
LNFX01002058
[LNFX] marine sediment metagenome; antarctic beach sand mud
370
284
-
Ser
TGA
[ENA]
¢þ
>WENV180042209
LNFX01005038
[LNFX] marine sediment metagenome; antarctic beach sand mud
391
318
-
Ile2
CAT
[ENA]
¢þ
>WENV180042144
LNFX01000660
[LNFX] marine sediment metagenome; antarctic beach sand mud
410
334
-
Pro
GGG
[ENA]
¢þ
>WENV180042210
LNFX01005169
[LNFX] marine sediment metagenome; antarctic beach sand mud
549
631
+
Leu
GAG
[ENA]
¢þ
>WENV180042162
LNFX01001276
[LNFX] marine sediment metagenome; antarctic beach sand mud
583
508
-
Ile2
CAT
[ENA]
¢þ
>WENV180042149
LNFX01000861
[LNFX] marine sediment metagenome; antarctic beach sand mud
618
705
+
Ser
GGA
[ENA]
¢þ
>WENV180042161
LNFX01001260
[LNFX] marine sediment metagenome; antarctic beach sand mud
789
865
+
Pro
GGG
[ENA]
¢þ
>WENV180042154
LNFX01001080
[LNFX] marine sediment metagenome; antarctic beach sand mud
847
763
-
Leu
TAG
[ENA]
¢þ
>WENV180042184
LNFX01002684
[LNFX] marine sediment metagenome; antarctic beach sand mud
918
843
-
Ala
TGC
[ENA]
¢þ
>WENV180042187
LNFX01003124
[LNFX] marine sediment metagenome; antarctic beach sand mud
933
1023
+
Ser
GGA
[ENA]
¢þ
>WENV180042177
LNFX01002340
[LNFX] marine sediment metagenome; antarctic beach sand mud
1047
1120
+
Met
CAT
[ENA]
¢þ
>WENV180042183
LNFX01002684
[LNFX] marine sediment metagenome; antarctic beach sand mud
1110
1034
-
Ile
GAT
[ENA]
¢þ
>WENV180042178
LNFX01002340
[LNFX] marine sediment metagenome; antarctic beach sand mud
1137
1221
+
Leu
TAG
[ENA]
¢þ
>WENV180042160
LNFX01001245
[LNFX] marine sediment metagenome; antarctic beach sand mud
1213
1137
-
Met
CAT
[ENA]
¢þ
>WENV180042186
LNFX01002784
[LNFX] marine sediment metagenome; antarctic beach sand mud
1219
1294
+
Ile2
CAT
[ENA]
¢þ
>WENV180042173
LNFX01001844
[LNFX] marine sediment metagenome; antarctic beach sand mud
1220
1295
+
Ala
GGC
[ENA]
¢þ
>WENV180042179
LNFX01002340
[LNFX] marine sediment metagenome; antarctic beach sand mud
1269
1343
+
Gln
TTG
[ENA]
¢þ
>WENV180042199
LNFX01004113
[LNFX] marine sediment metagenome; antarctic beach sand mud
1339
1423
+
Leu
TAG
[ENA]
¢þ
>WENV180042189
LNFX01003427
[LNFX] marine sediment metagenome; antarctic beach sand mud
1410
1486
+
Ile2
CAT
[ENA]
¢þ
>WENV180042198
LNFX01003965
[LNFX] marine sediment metagenome; antarctic beach sand mud
1485
1399
-
Leu
CAA
[ENA]
¢þ
>WENV180042196
LNFX01003889
[LNFX] marine sediment metagenome; antarctic beach sand mud
1498
1423
-
Lys
TTT
[ENA]
¢þ
>WENV180042172
LNFX01001828
[LNFX] marine sediment metagenome; antarctic beach sand mud
1551
1626
+
Phe
GAA
[ENA]
¢þ
>WENV180042180
LNFX01002539
[LNFX] marine sediment metagenome; antarctic beach sand mud
1611
1535
-
fMet
CAT
[ENA]
¢þ
>WENV180042155
LNFX01001121
[LNFX] marine sediment metagenome; antarctic beach sand mud
1614
1689
+
Ala
GGC
[ENA]
¢þ
>WENV180042201
LNFX01004215
[LNFX] marine sediment metagenome; antarctic beach sand mud
1648
1575
-
Thr
CGT
[ENA]
¢þ
>WENV180042156
LNFX01001121
[LNFX] marine sediment metagenome; antarctic beach sand mud
1765
1840
+
Ala
GGC
[ENA]
¢þ
>WENV180042194
LNFX01003860
[LNFX] marine sediment metagenome; antarctic beach sand mud
1855
1930
+
Gly
ACC
[ENA]
¢þ
>WENV180042119
LNFX01000011
[LNFX] marine sediment metagenome; antarctic beach sand mud
1920
2010
+
Ser
TGA
[ENA]
¢þ
>WENV180042176
LNFX01002193
[LNFX] marine sediment metagenome; antarctic beach sand mud
1923
2007
+
Tyr
GTA
[ENA]
¢þ
>WENV180042120
LNFX01000011
[LNFX] marine sediment metagenome; antarctic beach sand mud
2052
2127
+
Asn
GTT
[ENA]
¢þ
>WENV180042167
LNFX01001641
[LNFX] marine sediment metagenome; antarctic beach sand mud
2489
2565
+
Arg
TCT
[ENA]
¢þ
>WENV180042151
LNFX01000931
[LNFX] marine sediment metagenome; antarctic beach sand mud
2535
2625
+
Ser
TGA
[ENA]
¢þ
>WENV180042168
LNFX01001641
[LNFX] marine sediment metagenome; antarctic beach sand mud
2595
2670
+
His
GTG
[ENA]
¢þ
>WENV180042182
LNFX01002567
[LNFX] marine sediment metagenome; antarctic beach sand mud
2598
2522
-
His
GTG
[ENA]
¢þ
>WENV180042150
LNFX01000903
[LNFX] marine sediment metagenome; antarctic beach sand mud
2714
2788
+
Thr
CGT
[ENA]
¢þ
>WENV180042169
LNFX01001641
[LNFX] marine sediment metagenome; antarctic beach sand mud
2725
2809
+
Leu
TAG
[ENA]
¢þ
>WENV180042188
LNFX01003372
[LNFX] marine sediment metagenome; antarctic beach sand mud
2755
2830
+
Val
TAC
[ENA]
¢þ
>WENV180042138
LNFX01000440
[LNFX] marine sediment metagenome; antarctic beach sand mud
3119
3044
-
Arg
CCT
[ENA]
¢þ
>WENV180042134
LNFX01000387
[LNFX] marine sediment metagenome; antarctic beach sand mud
3791
3865
+
Gln
TTG
[ENA]
¢þ
>WENV180042135
LNFX01000387
[LNFX] marine sediment metagenome; antarctic beach sand mud
3874
3950
+
Met
CAT
[ENA]
¢þ
>WENV180042136
LNFX01000387
[LNFX] marine sediment metagenome; antarctic beach sand mud
3971
4045
+
Gln
TTG
[ENA]
¢þ
>WENV180042122
LNFX01000035
[LNFX] marine sediment metagenome; antarctic beach sand mud
4590
4514
-
Arg
ACG
[ENA]
¢þ
>WENV180042121
LNFX01000035
[LNFX] marine sediment metagenome; antarctic beach sand mud
4741
4652
-
Ser
GCT
[ENA]
¢þ
>WENV180042124
LNFX01000132
[LNFX] marine sediment metagenome; antarctic beach sand mud
5678
5603
-
Phe
GAA
[ENA]
¢þ
>WENV180042132
LNFX01000348
[LNFX] marine sediment metagenome; antarctic beach sand mud
5853
5929
+
Arg
TCT
[ENA]
¢þ
>WENV180042165
LNFX01001456
[LNFX] marine sediment metagenome; antarctic beach sand mud
6344
6430
+
Leu
TAG
[ENA]
¢þ
>WENV180042117
LNFX01000004
[LNFX] marine sediment metagenome; antarctic beach sand mud
6858
6934
+
Arg
CCG
[ENA]
¢þ
>WENV180042125
LNFX01000161
[LNFX] marine sediment metagenome; antarctic beach sand mud
11077
11160
+
Tyr
GTA
[ENA]
¢þ
>WENV180042126
LNFX01000161
[LNFX] marine sediment metagenome; antarctic beach sand mud
11164
11238
+
Gly
TCC
[ENA]
¢þ
>WENV180042127
LNFX01000161
[LNFX] marine sediment metagenome; antarctic beach sand mud
11243
11318
+
Thr
GGT
[ENA]
¢þ
>WENV180042128
LNFX01000161
[LNFX] marine sediment metagenome; antarctic beach sand mud
11434
11509
+
Trp
CCA
[ENA]
¢þ
>WENV180042133
LNFX01000348
[LNFX] marine sediment metagenome; antarctic beach sand mud
12387
12463
+
Asp
GTC
[ENA]
¢þ
>WENV180042131
LNFX01000311
[LNFX] marine sediment metagenome; antarctic beach sand mud
13666
13751
+
Leu
GAG
[ENA]
¢þ
>WENV180042118
LNFX01000006
[LNFX] marine sediment metagenome; antarctic beach sand mud
14978
14902
-
Asp
GTC
[ENA]
¢þ
>WENV180042141
LNFX01000544
[LNFX] marine sediment metagenome; antarctic beach sand mud
16068
16143
+
Val
GAC
[ENA]
¢þ
>WENV180042130
LNFX01000216
[LNFX] marine sediment metagenome; antarctic beach sand mud
27667
27580
-
Ser
GGA
[ENA]
¢þ
>WENV180042129
LNFX01000216
[LNFX] marine sediment metagenome; antarctic beach sand mud
31127
31052
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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