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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170716176
LSPY01001570
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
159
232
+
Glu
TTC
[ENA]
¢þ
>WENV170716178
LSPY01003404
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
293
218
-
Thr
TGT
[ENA]
¢þ
>WENV170716177
LSPY01001943
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
310
383
+
Ile
TAT
[ENA]
¢þ
>WENV170716172
LSPY01000457
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
339
413
+
Met
CAT
[ENA]
¢þ
>WENV170716179
LSPY01003821
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
390
314
-
Thr
TGT
[ENA]
¢þ
>WENV170716175
LSPY01000828
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
455
379
-
Lys
TTT
[ENA]
¢þ
>WENV170716174
LSPY01000828
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
539
466
-
Lys
TTT
[ENA]
¢þ
>WENV170716173
LSPY01000458
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
756
830
+
Thr
TGT
[ENA]
¢þ
>WENV170716171
LSPY01000354
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
1292
1205
-
Ser
TGA
[ENA]
¢þ
>WENV170716170
LSPY01000354
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
1688
1616
-
Glu
TTC
[ENA]
¢þ
>WENV170716164
LSPY01000230
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
1715
1800
+
Ser
GCT
[ENA]
¢þ
>WENV170716165
LSPY01000230
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
1842
1916
+
Thr
TGT
[ENA]
¢þ
>WENV170716166
LSPY01000230
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
1956
2029
+
Asn
GTT
[ENA]
¢þ
>WENV170716167
LSPY01000230
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
2219
2291
+
Asp
GTC
[ENA]
¢þ
>WENV170716168
LSPY01000230
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
2608
2692
+
Leu
TAA
[ENA]
¢þ
>WENV170716162
LSPY01000146
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
2633
2559
-
Met
CAT
[ENA]
¢þ
>WENV170716169
LSPY01000230
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
2693
2766
+
Leu
TAG
[ENA]
¢þ
>WENV170716161
LSPY01000146
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
2719
2645
-
Gln
TTG
[ENA]
¢þ
>WENV170716163
LSPY01000229
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
2860
2935
+
Pro
TGG
[ENA]
¢þ
>WENV170716160
LSPY01000077
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
3989
4064
+
Met
CAT
[ENA]
¢þ
>WENV170716159
LSPY01000054
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
4251
4324
+
Gln
TTG
[ENA]
¢þ
>WENV170716158
LSPY01000007
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
10063
10137
+
Pro
TGG
[ENA]
¢þ
>WENV170716150
LSPY01000002
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
14508
14579
+
Lys
TTT
[ENA]
¢þ
>WENV170716151
LSPY01000002
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
15210
15282
+
Asn
GTT
[ENA]
¢þ
>WENV170716152
LSPY01000002
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
15381
15454
+
Ile
GAT
[ENA]
¢þ
>WENV170716153
LSPY01000002
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
18108
18179
+
Gly
TCC
[ENA]
¢þ
>WENV170716154
LSPY01000002
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
50328
50416
+
Sup
CTA
[ENA]
¢þ
>WENV170716155
LSPY01000003
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
59476
59551
+
Pro
TGG
[ENA]
¢þ
>WENV170716156
LSPY01000003
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
60352
60433
+
Leu
TAG
[ENA]
¢þ
>WENV170716157
LSPY01000003
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
60510
60584
+
Glu
TTC
[ENA]
¢þ
>WENV170716149
LSPY01000001
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
73947
73876
-
Gln
TTG
[ENA]
¢þ
>WENV170716148
LSPY01000001
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
134636
134564
-
Pro
TGG
[ENA]
¢þ
>WENV170716145
LSPY01000001
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
149562
149633
+
Glu
TTC
[ENA]
¢þ
>WENV170716146
LSPY01000001
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
149725
149818
+
Ser
TGA
[ENA]
¢þ
>WENV170716147
LSPY01000001
[LSPY] termite gut metagenome; viral DNA filtered from gut of termites from termite colony 1
166530
166601
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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