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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
HIT:
75 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170784506
MCND01003080
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
6
82
+
Arg
ACG
[ENA]
¢þ
>WENV170784469
MCND01000305
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
15
89
+
Val
CAC
[ENA]
¢þ
>WENV170784496
MCND01001562
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
23
96
+
Gly
TCC
[ENA]
¢þ
>WENV170784479
MCND01000453
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
152
76
-
Val
GAC
[ENA]
¢þ
>WENV170784482
MCND01000506
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
162
87
-
Glu
TTC
[ENA]
¢þ
>WENV170784500
MCND01002174
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
177
261
+
Leu
CAG
[ENA]
¢þ
>WENV170784481
MCND01000506
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
316
241
-
Ala
GGC
[ENA]
¢þ
>WENV170784458
MCND01000145
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
341
417
+
Pro
TGG
[ENA]
¢þ
>WENV170784508
MCND01003876
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
380
456
+
Ile
GAT
[ENA]
¢þ
>WENV170784471
MCND01000321
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
402
478
+
Arg
TCT
[ENA]
¢þ
>WENV170784507
MCND01003244
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
496
404
-
Ser
GCT
[ENA]
¢þ
>WENV170784497
MCND01001785
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
566
490
-
Met
CAT
[ENA]
¢þ
>WENV170784504
MCND01002221
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
727
653
-
Val
CAC
[ENA]
¢þ
>WENV170784505
MCND01002552
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
768
843
+
Phe
GAA
[ENA]
¢þ
>WENV170784503
MCND01002214
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
922
998
+
Pro
GGG
[ENA]
¢þ
>WENV170784499
MCND01001854
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
948
872
-
Met
CAT
[ENA]
¢þ
>WENV170784502
MCND01002180
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1093
1019
-
Thr
GGT
[ENA]
¢þ
>WENV170784501
MCND01002180
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1177
1104
-
Gly
TCC
[ENA]
¢þ
>WENV170784461
MCND01000201
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1360
1436
+
Met
CAT
[ENA]
¢þ
>WENV170784449
MCND01000092
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1507
1421
-
Leu
TAA
[ENA]
¢þ
>WENV170784498
MCND01001786
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1517
1441
-
Pro
CGG
[ENA]
¢þ
>WENV170784473
MCND01000351
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1602
1677
+
Phe
GAA
[ENA]
¢þ
>WENV170784462
MCND01000201
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1633
1709
+
Met
CAT
[ENA]
¢þ
>WENV170784488
MCND01001078
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1804
1728
-
Arg
ACG
[ENA]
¢þ
>WENV170784478
MCND01000453
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1864
1788
-
Asp
GTC
[ENA]
¢þ
>WENV170784495
MCND01001400
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
1979
2054
+
Thr
TGT
[ENA]
¢þ
>WENV170784487
MCND01001078
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2002
1912
-
Ser
GCT
[ENA]
¢þ
>WENV170784477
MCND01000453
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2039
1963
-
Asp
GTC
[ENA]
¢þ
>WENV170784494
MCND01001393
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2158
2083
-
Ala
TGC
[ENA]
¢þ
>WENV170784490
MCND01001368
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2171
2255
+
Tyr
GTA
[ENA]
¢þ
>WENV170784476
MCND01000453
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2174
2099
-
Val
TAC
[ENA]
¢þ
>WENV170784493
MCND01001393
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2245
2169
-
Ile
GAT
[ENA]
¢þ
>WENV170784491
MCND01001368
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2280
2353
+
Gly
TCC
[ENA]
¢þ
>WENV170784470
MCND01000307
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2314
2390
+
Arg
CCT
[ENA]
¢þ
>WENV170784492
MCND01001368
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2380
2455
+
Thr
GGT
[ENA]
¢þ
>WENV170784459
MCND01000150
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
2947
3036
+
Ser
TGA
[ENA]
¢þ
>WENV170784454
MCND01000124
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
3865
3789
-
Pro
GGG
[ENA]
¢þ
>WENV170784489
MCND01001085
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
4190
4116
-
Val
CAC
[ENA]
¢þ
>WENV170784486
MCND01001014
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
4206
4114
-
Ser
GCT
[ENA]
¢þ
>WENV170784485
MCND01000949
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
5224
5148
-
Met
CAT
[ENA]
¢þ
>WENV170784484
MCND01000939
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
5297
5211
-
Leu
TAG
[ENA]
¢þ
>WENV170784468
MCND01000300
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
6712
6637
-
Gly
GCC
[ENA]
¢þ
>WENV170784436
MCND01000005
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
7205
7278
+
Gly
CCC
[ENA]
¢þ
>WENV170784483
MCND01000529
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
7370
7446
+
Pro
TGG
[ENA]
¢þ
>WENV170784480
MCND01000506
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
8891
8966
+
Asn
GTT
[ENA]
¢þ
>WENV170784438
MCND01000020
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
9704
9615
-
Ser
CGA
[ENA]
¢þ
>WENV170784460
MCND01000192
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
11975
11900
-
Trp
CCA
[ENA]
¢þ
>WENV170784451
MCND01000107
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
12729
12804
+
Asn
GTT
[ENA]
¢þ
>WENV170784452
MCND01000107
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
12814
12890
+
Pro
TGG
[ENA]
¢þ
>WENV170784466
MCND01000240
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
12963
13039
+
Met
CAT
[ENA]
¢þ
>WENV170784475
MCND01000383
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
13163
13089
-
Arg
TCT
[ENA]
¢þ
>WENV170784474
MCND01000363
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
14387
14311
-
Pro
CGG
[ENA]
¢þ
>WENV170784472
MCND01000324
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
15872
15799
-
Cys
GCA
[ENA]
¢þ
>WENV170784467
MCND01000287
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
17414
17490
+
Arg
CCG
[ENA]
¢þ
>WENV170784445
MCND01000055
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
18868
18793
-
Lys
TTT
[ENA]
¢þ
>WENV170784463
MCND01000219
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
19457
19382
-
His
GTG
[ENA]
¢þ
>WENV170784457
MCND01000143
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
19968
19884
-
Leu
TAG
[ENA]
¢þ
>WENV170784456
MCND01000143
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
20102
20027
-
His
GTG
[ENA]
¢þ
>WENV170784455
MCND01000143
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
20211
20135
-
Arg
TCT
[ENA]
¢þ
>WENV170784465
MCND01000234
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
22317
22227
-
Ser
CGA
[ENA]
¢þ
>WENV170784464
MCND01000227
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
22354
22441
+
Ser
TGA
[ENA]
¢þ
>WENV170784450
MCND01000098
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
24821
24734
-
Ser
TGA
[ENA]
¢þ
>WENV170784444
MCND01000049
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
27591
27502
-
Ser
GGA
[ENA]
¢þ
>WENV170784453
MCND01000121
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
31989
31914
-
His
GTG
[ENA]
¢þ
>WENV170784448
MCND01000067
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
32059
32145
+
Leu
CAG
[ENA]
¢þ
>WENV170784442
MCND01000025
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
36859
36783
-
Asp
GTC
[ENA]
¢þ
>WENV170784441
MCND01000025
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
36954
36879
-
Val
TAC
[ENA]
¢þ
>WENV170784440
MCND01000025
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
37218
37142
-
Asp
GTC
[ENA]
¢þ
>WENV170784439
MCND01000025
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
37314
37239
-
Val
TAC
[ENA]
¢þ
>WENV170784437
MCND01000020
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
39292
39365
+
Gly
CCC
[ENA]
¢þ
>WENV170784446
MCND01000056
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
43562
43647
+
Leu
GAG
[ENA]
¢þ
>WENV170784447
MCND01000056
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
43744
43820
+
Met
CAT
[ENA]
¢þ
>WENV170784443
MCND01000034
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
46962
47038
+
Met
CAT
[ENA]
¢þ
>WENV170784435
MCND01000004
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
100260
100335
+
Phe
GAA
[ENA]
¢þ
>WENV170784434
MCND01000001
[MCND] bioreactor metagenome; activated sludge enriched with benzalkonium chloride
142022
142106
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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