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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
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|
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HOW TO USE
tRNA gene List
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
HIT:
99 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170784587
MCNE01002693
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2
77
+
Lys
CTT
[ENA]
¢þ
>WENV170784600
MCNE01004242
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
72
-1
-
Phe
GAA
[ENA]
¢þ
>WENV170784601
MCNE01004602
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
76
1
-
Pro
TGG
[ENA]
¢þ
>WENV170784519
MCNE01000024
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
87
14
-
Cys
GCA
[ENA]
¢þ
>WENV170784606
MCNE01006530
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
95
3
-
Ser
GGA
[ENA]
¢þ
>WENV170784549
MCNE01000483
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
118
191
+
Gly
CCC
[ENA]
¢þ
>WENV170784576
MCNE01001349
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
126
53
-
Gly
TCC
[ENA]
¢þ
>WENV170784535
MCNE01000133
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
144
69
-
Asn
GTT
[ENA]
¢þ
>WENV170784520
MCNE01000028
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
153
78
-
Val
TAC
[ENA]
¢þ
>WENV170784583
MCNE01002086
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
155
79
-
Ile
GAT
[ENA]
¢þ
>WENV170784603
MCNE01005074
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
159
84
-
Ala
TGC
[ENA]
¢þ
>WENV170784542
MCNE01000192
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
164
240
+
Pro
CGG
[ENA]
¢þ
>WENV170784534
MCNE01000121
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
193
118
-
Val
TAC
[ENA]
¢þ
>WENV170784577
MCNE01001382
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
200
126
-
Arg
CCT
[ENA]
¢þ
>WENV170784575
MCNE01001349
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
236
151
-
Tyr
GTA
[ENA]
¢þ
>WENV170784594
MCNE01003416
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
236
320
+
Leu
CAG
[ENA]
¢þ
>WENV170784572
MCNE01001141
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
239
164
-
Val
TAC
[ENA]
¢þ
>WENV170784564
MCNE01000761
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
256
181
-
Thr
GGT
[ENA]
¢þ
>WENV170784588
MCNE01002693
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
275
350
+
Lys
CTT
[ENA]
¢þ
>WENV170784598
MCNE01003971
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
278
362
+
Leu
CAA
[ENA]
¢þ
>WENV170784607
MCNE01006658
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
301
227
-
Arg
CCT
[ENA]
¢þ
>WENV170784586
MCNE01002588
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
307
383
+
Pro
GGG
[ENA]
¢þ
>WENV170784590
MCNE01002917
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
310
223
-
Ser
TGA
[ENA]
¢þ
>WENV170784574
MCNE01001318
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
333
409
+
Met
CAT
[ENA]
¢þ
>WENV170784592
MCNE01003081
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
348
421
+
Gly
CCC
[ENA]
¢þ
>WENV170784567
MCNE01000864
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
355
430
+
Ala
CGC
[ENA]
¢þ
>WENV170784563
MCNE01000761
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
356
283
-
Gly
TCC
[ENA]
¢þ
>WENV170784596
MCNE01003606
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
375
289
-
Leu
TAG
[ENA]
¢þ
>WENV170784605
MCNE01005765
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
405
481
+
Arg
ACG
[ENA]
¢þ
>WENV170784545
MCNE01000228
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
437
350
-
Ser
TGA
[ENA]
¢þ
>WENV170784562
MCNE01000761
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
465
381
-
Tyr
GTA
[ENA]
¢þ
>WENV170784602
MCNE01004740
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
518
433
-
Leu
CAA
[ENA]
¢þ
>WENV170784593
MCNE01003321
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
541
449
-
Ser
GCT
[ENA]
¢þ
>WENV170784585
MCNE01002583
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
612
536
-
Gln
TTG
[ENA]
¢þ
>WENV170784548
MCNE01000466
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
614
706
+
Ser
GCT
[ENA]
¢þ
>WENV170784547
MCNE01000381
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
626
550
-
Pro
TGG
[ENA]
¢þ
>WENV170784604
MCNE01005687
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
647
572
-
Trp
CCA
[ENA]
¢þ
>WENV170784582
MCNE01001926
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
712
787
+
Gly
GCC
[ENA]
¢þ
>WENV170784556
MCNE01000691
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
812
737
-
Thr
TGT
[ENA]
¢þ
>WENV170784599
MCNE01004000
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
831
758
-
Cys
GCA
[ENA]
¢þ
>WENV170784597
MCNE01003610
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
853
778
-
Trp
CCA
[ENA]
¢þ
>WENV170784579
MCNE01001652
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
903
978
+
Gly
GCC
[ENA]
¢þ
>WENV170784595
MCNE01003583
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
907
982
+
Phe
GAA
[ENA]
¢þ
>WENV170784565
MCNE01000835
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
954
879
-
Lys
CTT
[ENA]
¢þ
>WENV170784591
MCNE01002975
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1058
969
-
Ser
TGA
[ENA]
¢þ
>WENV170784568
MCNE01001002
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1073
1159
+
Tyr
GTA
[ENA]
¢þ
>WENV170784589
MCNE01002693
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1106
1192
+
Leu
TAG
[ENA]
¢þ
>WENV170784584
MCNE01002093
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1169
1093
-
Arg
CCT
[ENA]
¢þ
>WENV170784551
MCNE01000509
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1204
1279
+
Thr
TGT
[ENA]
¢þ
>WENV170784580
MCNE01001652
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1276
1349
+
Cys
GCA
[ENA]
¢þ
>WENV170784569
MCNE01001002
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1308
1381
+
Gly
TCC
[ENA]
¢þ
>WENV170784527
MCNE01000071
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1386
1462
+
Met
CAT
[ENA]
¢þ
>WENV170784570
MCNE01001002
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1394
1468
+
Thr
GGT
[ENA]
¢þ
>WENV170784581
MCNE01001718
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1396
1321
-
Thr
TGT
[ENA]
¢þ
>WENV170784573
MCNE01001162
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1411
1337
-
Arg
CCG
[ENA]
¢þ
>WENV170784566
MCNE01000837
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1605
1530
-
His
GTG
[ENA]
¢þ
>WENV170784528
MCNE01000071
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1659
1735
+
Met
CAT
[ENA]
¢þ
>WENV170784529
MCNE01000072
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1696
1772
+
Val
GAC
[ENA]
¢þ
>WENV170784578
MCNE01001395
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1877
1804
-
Gly
TCC
[ENA]
¢þ
>WENV170784571
MCNE01001049
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1997
2087
+
Ser
CGA
[ENA]
¢þ
>WENV170784554
MCNE01000511
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2033
1949
-
Leu
CAG
[ENA]
¢þ
>WENV170784561
MCNE01000749
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2164
2089
-
Met
CAT
[ENA]
¢þ
>WENV170784560
MCNE01000745
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2219
2144
-
Ala
TGC
[ENA]
¢þ
>WENV170784532
MCNE01000111
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2292
2368
+
Arg
CCT
[ENA]
¢þ
>WENV170784559
MCNE01000745
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2306
2230
-
Ile
GAT
[ENA]
¢þ
>WENV170784558
MCNE01000708
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2456
2380
-
Asn
GTT
[ENA]
¢þ
>WENV170784552
MCNE01000509
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2634
2709
+
Asn
GTT
[ENA]
¢þ
>WENV170784555
MCNE01000667
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2751
2826
+
Lys
TTT
[ENA]
¢þ
>WENV170784557
MCNE01000706
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
2755
2679
-
Arg
ACG
[ENA]
¢þ
>WENV170784553
MCNE01000511
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
3001
2917
-
Leu
CAG
[ENA]
¢þ
>WENV170784546
MCNE01000345
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
3012
2937
-
Phe
GAA
[ENA]
¢þ
>WENV170784550
MCNE01000505
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
3170
3245
+
Ala
CGC
[ENA]
¢þ
>WENV170784509
MCNE01000001
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
3489
3405
-
Leu
CAA
[ENA]
¢þ
>WENV170784533
MCNE01000112
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
4228
4152
-
Met
CAT
[ENA]
¢þ
>WENV170784540
MCNE01000169
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
4271
4195
-
Pro
CGG
[ENA]
¢þ
>WENV170784544
MCNE01000216
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
4465
4541
+
Met
CAT
[ENA]
¢þ
>WENV170784539
MCNE01000169
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
4488
4412
-
Pro
CGG
[ENA]
¢þ
>WENV170784543
MCNE01000207
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
5324
5248
-
Arg
TCT
[ENA]
¢þ
>WENV170784541
MCNE01000184
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
6600
6676
+
Met
CAT
[ENA]
¢þ
>WENV170784531
MCNE01000088
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
8530
8441
-
Ser
CGA
[ENA]
¢þ
>WENV170784538
MCNE01000153
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
8638
8713
+
Asn
GTT
[ENA]
¢þ
>WENV170784512
MCNE01000006
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
10594
10667
+
Gly
CCC
[ENA]
¢þ
>WENV170784537
MCNE01000147
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
10603
10528
-
Trp
CCA
[ENA]
¢þ
>WENV170784536
MCNE01000144
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
10974
10899
-
Glu
TTC
[ENA]
¢þ
>WENV170784518
MCNE01000019
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
26135
26221
+
Leu
TAA
[ENA]
¢þ
>WENV170784510
MCNE01000002
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
27652
27577
-
Phe
GAA
[ENA]
¢þ
>WENV170784515
MCNE01000015
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
28202
28113
-
Ser
GGA
[ENA]
¢þ
>WENV170784530
MCNE01000072
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
32924
33000
+
Pro
GGG
[ENA]
¢þ
>WENV170784526
MCNE01000047
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
38823
38739
-
Leu
TAG
[ENA]
¢þ
>WENV170784525
MCNE01000047
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
38957
38882
-
His
GTG
[ENA]
¢þ
>WENV170784524
MCNE01000047
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
39066
38990
-
Arg
TCT
[ENA]
¢þ
>WENV170784522
MCNE01000046
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
43621
43706
+
Leu
GAG
[ENA]
¢þ
>WENV170784523
MCNE01000046
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
43803
43879
+
Met
CAT
[ENA]
¢þ
>WENV170784516
MCNE01000017
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
56053
56128
+
Lys
TTT
[ENA]
¢þ
>WENV170784521
MCNE01000031
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
56243
56319
+
Met
CAT
[ENA]
¢þ
>WENV170784517
MCNE01000017
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
56262
56338
+
Pro
TGG
[ENA]
¢þ
>WENV170784513
MCNE01000008
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
127762
127852
+
Ser
GCT
[ENA]
¢þ
>WENV170784514
MCNE01000008
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
127960
128036
+
Arg
ACG
[ENA]
¢þ
>WENV170784511
MCNE01000003
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
159419
159495
+
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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