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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170784770
MCNG01002066
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
33
108
+
Asn
GTT
[ENA]
¢þ
>WENV170784729
MCNG01000219
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
54
129
+
Trp
CCA
[ENA]
¢þ
>WENV170784748
MCNG01000648
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
72
1
-
Cys
GCA
[ENA]
¢þ
>WENV170784698
MCNG01000015
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
155
80
-
Val
TAC
[ENA]
¢þ
>WENV170784727
MCNG01000194
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
190
265
+
Trp
CCA
[ENA]
¢þ
>WENV170784737
MCNG01000390
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
199
124
-
Ala
GGC
[ENA]
¢þ
>WENV170784771
MCNG01002492
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
216
142
-
Val
GAC
[ENA]
¢þ
>WENV170784740
MCNG01000460
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
245
169
-
Arg
ACG
[ENA]
¢þ
>WENV170784757
MCNG01001218
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
251
176
-
Thr
GGT
[ENA]
¢þ
>WENV170784760
MCNG01001467
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
338
411
+
Cys
GCA
[ENA]
¢þ
>WENV170784756
MCNG01001218
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
351
278
-
Gly
TCC
[ENA]
¢þ
>WENV170784768
MCNG01002048
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
402
489
+
Ser
TGA
[ENA]
¢þ
>WENV170784749
MCNG01000802
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
437
350
-
Ser
TGA
[ENA]
¢þ
>WENV170784767
MCNG01001915
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
444
519
+
Met
CAT
[ENA]
¢þ
>WENV170784755
MCNG01001218
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
460
376
-
Tyr
GTA
[ENA]
¢þ
>WENV170784769
MCNG01002048
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
496
571
+
Thr
TGT
[ENA]
¢þ
>WENV170784761
MCNG01001477
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
568
492
-
Pro
GGG
[ENA]
¢þ
>WENV170784752
MCNG01001184
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
750
675
-
Thr
TGT
[ENA]
¢þ
>WENV170784750
MCNG01000847
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
809
882
+
Gly
TCC
[ENA]
¢þ
>WENV170784747
MCNG01000646
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1076
1000
-
Met
CAT
[ENA]
¢þ
>WENV170784764
MCNG01001751
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1209
1285
+
Arg
CCG
[ENA]
¢þ
>WENV170784765
MCNG01001751
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1349
1424
+
His
GTG
[ENA]
¢þ
>WENV170784759
MCNG01001449
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1426
1512
+
Leu
TAA
[ENA]
¢þ
>WENV170784766
MCNG01001751
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1466
1552
+
Leu
CAG
[ENA]
¢þ
>WENV170784751
MCNG01001037
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1471
1396
-
Thr
TGT
[ENA]
¢þ
>WENV170784762
MCNG01001680
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1557
1646
+
Ser
GGA
[ENA]
¢þ
>WENV170784763
MCNG01001739
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1558
1650
+
Ser
GCT
[ENA]
¢þ
>WENV170784758
MCNG01001343
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1565
1641
+
Met
CAT
[ENA]
¢þ
>WENV170784732
MCNG01000259
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1584
1668
+
Leu
CAA
[ENA]
¢þ
>WENV170784744
MCNG01000527
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1710
1786
+
Pro
TGG
[ENA]
¢þ
>WENV170784693
MCNG01000001
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1785
1709
-
Arg
ACG
[ENA]
¢þ
>WENV170784692
MCNG01000001
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1933
1857
-
Arg
ACG
[ENA]
¢þ
>WENV170784734
MCNG01000326
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
1961
1888
-
Gly
CCC
[ENA]
¢þ
>WENV170784691
MCNG01000001
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
2131
2041
-
Ser
GCT
[ENA]
¢þ
>WENV170784754
MCNG01001208
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
2200
2125
-
Ala
TGC
[ENA]
¢þ
>WENV170784753
MCNG01001208
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
2287
2211
-
Ile
GAT
[ENA]
¢þ
>WENV170784725
MCNG01000191
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
2330
2406
+
Arg
CCT
[ENA]
¢þ
>WENV170784722
MCNG01000133
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
2776
2701
-
Phe
GAA
[ENA]
¢þ
>WENV170784711
MCNG01000066
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
2983
2907
-
Pro
GGG
[ENA]
¢þ
>WENV170784724
MCNG01000138
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
3452
3376
-
Gln
TTG
[ENA]
¢þ
>WENV170784746
MCNG01000634
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
3703
3627
-
Val
GAC
[ENA]
¢þ
>WENV170784726
MCNG01000193
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
4227
4151
-
Met
CAT
[ENA]
¢þ
>WENV170784728
MCNG01000215
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
4247
4322
+
Ala
CGC
[ENA]
¢þ
>WENV170784739
MCNG01000460
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
4389
4297
-
Ser
GCT
[ENA]
¢þ
>WENV170784741
MCNG01000467
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
4733
4658
-
Gly
GCC
[ENA]
¢þ
>WENV170784720
MCNG01000126
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
5302
5216
-
Leu
TAG
[ENA]
¢þ
>WENV170784745
MCNG01000563
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
5322
5409
+
Ser
TGA
[ENA]
¢þ
>WENV170784738
MCNG01000398
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
5407
5483
+
Met
CAT
[ENA]
¢þ
>WENV170784712
MCNG01000071
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
7046
6971
-
Lys
CTT
[ENA]
¢þ
>WENV170784743
MCNG01000474
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
7618
7545
-
Cys
GCA
[ENA]
¢þ
>WENV170784742
MCNG01000474
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
7749
7674
-
Gly
GCC
[ENA]
¢þ
>WENV170784718
MCNG01000115
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
7950
8024
+
Arg
CCT
[ENA]
¢þ
>WENV170784730
MCNG01000235
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
8223
8148
-
Val
TAC
[ENA]
¢þ
>WENV170784721
MCNG01000133
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
8254
8179
-
Phe
GAA
[ENA]
¢þ
>WENV170784717
MCNG01000109
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
8569
8480
-
Ser
CGA
[ENA]
¢þ
>WENV170784736
MCNG01000390
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
8774
8849
+
Asn
GTT
[ENA]
¢þ
>WENV170784735
MCNG01000360
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
10341
10425
+
Leu
GAG
[ENA]
¢þ
>WENV170784733
MCNG01000320
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
11197
11272
+
Val
TAC
[ENA]
¢þ
>WENV170784731
MCNG01000249
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
12387
12461
+
Arg
CCG
[ENA]
¢þ
>WENV170784716
MCNG01000087
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
13040
12965
-
His
GTG
[ENA]
¢þ
>WENV170784708
MCNG01000052
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
15954
16043
+
Ser
GGA
[ENA]
¢þ
>WENV170784719
MCNG01000122
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
17230
17155
-
Gly
GCC
[ENA]
¢þ
>WENV170784723
MCNG01000134
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
19412
19486
+
Val
CAC
[ENA]
¢þ
>WENV170784715
MCNG01000078
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
21345
21261
-
Leu
TAG
[ENA]
¢þ
>WENV170784714
MCNG01000078
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
21479
21404
-
His
GTG
[ENA]
¢þ
>WENV170784713
MCNG01000078
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
21588
21512
-
Arg
TCT
[ENA]
¢þ
>WENV170784707
MCNG01000051
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
23822
23732
-
Ser
CGA
[ENA]
¢þ
>WENV170784696
MCNG01000009
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
31221
31147
-
Thr
GGT
[ENA]
¢þ
>WENV170784695
MCNG01000009
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
31307
31234
-
Gly
TCC
[ENA]
¢þ
>WENV170784694
MCNG01000009
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
31542
31456
-
Tyr
GTA
[ENA]
¢þ
>WENV170784710
MCNG01000066
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
34189
34113
-
Val
GAC
[ENA]
¢þ
>WENV170784709
MCNG01000063
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
34423
34507
+
Leu
CAA
[ENA]
¢þ
>WENV170784702
MCNG01000036
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
42013
42103
+
Ser
GGA
[ENA]
¢þ
>WENV170784703
MCNG01000039
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
43560
43645
+
Leu
GAG
[ENA]
¢þ
>WENV170784704
MCNG01000039
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
43742
43818
+
Met
CAT
[ENA]
¢þ
>WENV170784706
MCNG01000044
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
46286
46210
-
Met
CAT
[ENA]
¢þ
>WENV170784705
MCNG01000044
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
46559
46483
-
Met
CAT
[ENA]
¢þ
>WENV170784699
MCNG01000021
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
52178
52254
+
Arg
TCT
[ENA]
¢þ
>WENV170784701
MCNG01000034
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
52856
52781
-
Thr
CGT
[ENA]
¢þ
>WENV170784700
MCNG01000034
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
53056
53131
+
Asn
GTT
[ENA]
¢þ
>WENV170784697
MCNG01000010
[MCNG] bioreactor metagenome; sea sediment enriched with benzalkonium chloride
76208
76135
-
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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