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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[MJUE] soil metagenome; viral particles from soil sample BG12
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170954159
MJUE01001740
[MJUE] soil metagenome; viral particles from soil sample BG12
5
89
+
Leu
TAG
[ENA]
¢þ
>WENV170954156
MJUE01000810
[MJUE] soil metagenome; viral particles from soil sample BG12
79
162
+
Leu
CAA
[ENA]
¢þ
>WENV170954167
MJUE01002940
[MJUE] soil metagenome; viral particles from soil sample BG12
125
38
-
Leu
TAA
[ENA]
¢þ
>WENV170954165
MJUE01002835
[MJUE] soil metagenome; viral particles from soil sample BG12
133
58
-
Lys
TTT
[ENA]
¢þ
>WENV170954166
MJUE01002850
[MJUE] soil metagenome; viral particles from soil sample BG12
133
210
+
Lys
TTT
[ENA]
¢þ
>WENV170954163
MJUE01002694
[MJUE] soil metagenome; viral particles from soil sample BG12
139
215
+
Ile
GAT
[ENA]
¢þ
>WENV170954155
MJUE01000637
[MJUE] soil metagenome; viral particles from soil sample BG12
190
116
-
Met
CAT
[ENA]
¢þ
>WENV170954169
MJUE01003837
[MJUE] soil metagenome; viral particles from soil sample BG12
193
117
-
Met
CAT
[ENA]
¢þ
>WENV170954168
MJUE01003459
[MJUE] soil metagenome; viral particles from soil sample BG12
209
283
+
Met
CAT
[ENA]
¢þ
>WENV170954152
MJUE01000362
[MJUE] soil metagenome; viral particles from soil sample BG12
218
291
+
Met
CAT
[ENA]
¢þ
>WENV170954164
MJUE01002694
[MJUE] soil metagenome; viral particles from soil sample BG12
230
306
+
Met
CAT
[ENA]
¢þ
>WENV170954151
MJUE01000323
[MJUE] soil metagenome; viral particles from soil sample BG12
235
158
-
Arg
TCT
[ENA]
¢þ
>WENV170954160
MJUE01001979
[MJUE] soil metagenome; viral particles from soil sample BG12
239
163
-
Leu
TAA
[ENA]
¢þ
>WENV170954171
MJUE01004233
[MJUE] soil metagenome; viral particles from soil sample BG12
292
216
-
Met
CAT
[ENA]
¢þ
>WENV170954150
MJUE01000323
[MJUE] soil metagenome; viral particles from soil sample BG12
322
252
-
Cys
GCA
[ENA]
¢þ
>WENV170954170
MJUE01004233
[MJUE] soil metagenome; viral particles from soil sample BG12
396
323
-
Asn
GTT
[ENA]
¢þ
>WENV170954149
MJUE01000323
[MJUE] soil metagenome; viral particles from soil sample BG12
406
329
-
Arg
ACG
[ENA]
¢þ
>WENV170954153
MJUE01000427
[MJUE] soil metagenome; viral particles from soil sample BG12
411
486
+
Ile
GAT
[ENA]
¢þ
>WENV170954162
MJUE01002076
[MJUE] soil metagenome; viral particles from soil sample BG12
581
509
-
Asn
GTT
[ENA]
¢þ
>WENV170954157
MJUE01000884
[MJUE] soil metagenome; viral particles from soil sample BG12
596
520
-
Pro
TGG
[ENA]
¢þ
>WENV170954154
MJUE01000515
[MJUE] soil metagenome; viral particles from soil sample BG12
620
693
+
Lys
TTT
[ENA]
¢þ
>WENV170954158
MJUE01001190
[MJUE] soil metagenome; viral particles from soil sample BG12
648
573
-
Arg
CCT
[ENA]
¢þ
>WENV170954161
MJUE01002076
[MJUE] soil metagenome; viral particles from soil sample BG12
801
731
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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