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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[MWSA] mollusc metagenome; gill 40 cm from animal A
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170980452
MWSA01003141
[MWSA] mollusc metagenome; gill 40 cm from animal A
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV170980444
MWSA01001868
[MWSA] mollusc metagenome; gill 40 cm from animal A
6
95
+
Ser
TGA
[ENA]
¢þ
>WENV170980474
MWSA01004734
[MWSA] mollusc metagenome; gill 40 cm from animal A
8
81
+
Cys
GCA
[ENA]
¢þ
>WENV170980442
MWSA01001703
[MWSA] mollusc metagenome; gill 40 cm from animal A
10
99
+
Ser
CGA
[ENA]
¢þ
>WENV170980420
MWSA01000058
[MWSA] mollusc metagenome; gill 40 cm from animal A
13
89
+
Arg
CCT
[ENA]
¢þ
>WENV170980436
MWSA01001274
[MWSA] mollusc metagenome; gill 40 cm from animal A
17
93
+
Val
GAC
[ENA]
¢þ
>WENV170980448
MWSA01002541
[MWSA] mollusc metagenome; gill 40 cm from animal A
23
99
+
Arg
CCG
[ENA]
¢þ
>WENV170980468
MWSA01004375
[MWSA] mollusc metagenome; gill 40 cm from animal A
24
99
+
Lys
TTT
[ENA]
¢þ
>WENV170980449
MWSA01002888
[MWSA] mollusc metagenome; gill 40 cm from animal A
24
99
+
Glu
TTC
[ENA]
¢þ
>WENV170980453
MWSA01003404
[MWSA] mollusc metagenome; gill 40 cm from animal A
24
99
+
Lys
TTT
[ENA]
¢þ
>WENV170980438
MWSA01001373
[MWSA] mollusc metagenome; gill 40 cm from animal A
71
-1
-
Asn
GTT
[ENA]
¢þ
>WENV170980457
MWSA01003564
[MWSA] mollusc metagenome; gill 40 cm from animal A
75
1
-
Ala
TGC
[ENA]
¢þ
>WENV170980432
MWSA01000939
[MWSA] mollusc metagenome; gill 40 cm from animal A
80
5
-
Thr
TGT
[ENA]
¢þ
>WENV170980454
MWSA01003452
[MWSA] mollusc metagenome; gill 40 cm from animal A
80
5
-
Phe
GAA
[ENA]
¢þ
>WENV170980426
MWSA01000376
[MWSA] mollusc metagenome; gill 40 cm from animal A
87
11
-
Arg
CCT
[ENA]
¢þ
>WENV170980458
MWSA01003672
[MWSA] mollusc metagenome; gill 40 cm from animal A
92
2
-
Ser
GGA
[ENA]
¢þ
>WENV170980475
MWSA01004734
[MWSA] mollusc metagenome; gill 40 cm from animal A
138
225
+
Leu
TAA
[ENA]
¢þ
>WENV170980476
MWSA01004826
[MWSA] mollusc metagenome; gill 40 cm from animal A
141
215
+
Val
CAC
[ENA]
¢þ
>WENV170980428
MWSA01000507
[MWSA] mollusc metagenome; gill 40 cm from animal A
199
125
-
Asn
GTT
[ENA]
¢þ
>WENV170980423
MWSA01000085
[MWSA] mollusc metagenome; gill 40 cm from animal A
249
174
-
Thr
GGT
[ENA]
¢þ
>WENV170980425
MWSA01000211
[MWSA] mollusc metagenome; gill 40 cm from animal A
254
330
+
Met
CAT
[ENA]
¢þ
>WENV170980433
MWSA01000954
[MWSA] mollusc metagenome; gill 40 cm from animal A
345
271
-
Gln
TTG
[ENA]
¢þ
>WENV170980439
MWSA01001466
[MWSA] mollusc metagenome; gill 40 cm from animal A
345
421
+
Pro
CGG
[ENA]
¢þ
>WENV170980422
MWSA01000085
[MWSA] mollusc metagenome; gill 40 cm from animal A
359
286
-
Gly
TCC
[ENA]
¢þ
>WENV170980477
MWSA01004918
[MWSA] mollusc metagenome; gill 40 cm from animal A
372
288
-
Leu
GAG
[ENA]
¢þ
>WENV170980472
MWSA01004645
[MWSA] mollusc metagenome; gill 40 cm from animal A
402
329
-
Gly
CCC
[ENA]
¢þ
>WENV170980467
MWSA01004331
[MWSA] mollusc metagenome; gill 40 cm from animal A
411
501
+
Ser
GGA
[ENA]
¢þ
>WENV170980451
MWSA01003098
[MWSA] mollusc metagenome; gill 40 cm from animal A
439
364
-
Gly
GCC
[ENA]
¢þ
>WENV170980456
MWSA01003564
[MWSA] mollusc metagenome; gill 40 cm from animal A
477
403
-
Asn
GTT
[ENA]
¢þ
>WENV170980440
MWSA01001484
[MWSA] mollusc metagenome; gill 40 cm from animal A
501
577
+
Val
TAC
[ENA]
¢þ
>WENV170980421
MWSA01000085
[MWSA] mollusc metagenome; gill 40 cm from animal A
621
537
-
Tyr
GTA
[ENA]
¢þ
>WENV170980478
MWSA01005029
[MWSA] mollusc metagenome; gill 40 cm from animal A
643
567
-
Arg
CCG
[ENA]
¢þ
>WENV170980429
MWSA01000593
[MWSA] mollusc metagenome; gill 40 cm from animal A
662
746
+
Leu
TAG
[ENA]
¢þ
>WENV170980446
MWSA01002213
[MWSA] mollusc metagenome; gill 40 cm from animal A
725
801
+
Pro
GGG
[ENA]
¢þ
>WENV170980460
MWSA01003721
[MWSA] mollusc metagenome; gill 40 cm from animal A
848
919
+
Asn
GTT
[ENA]
¢þ
>WENV170980447
MWSA01002369
[MWSA] mollusc metagenome; gill 40 cm from animal A
869
794
-
Phe
GAA
[ENA]
¢þ
>WENV170980434
MWSA01001027
[MWSA] mollusc metagenome; gill 40 cm from animal A
943
1027
+
Leu
TAG
[ENA]
¢þ
>WENV170980418
MWSA01000019
[MWSA] mollusc metagenome; gill 40 cm from animal A
1053
1142
+
Ser
CGA
[ENA]
¢þ
>WENV170980462
MWSA01003881
[MWSA] mollusc metagenome; gill 40 cm from animal A
1133
1059
-
Asn
GTT
[ENA]
¢þ
>WENV170980427
MWSA01000502
[MWSA] mollusc metagenome; gill 40 cm from animal A
1281
1206
-
Phe
GAA
[ENA]
¢þ
>WENV170980471
MWSA01004461
[MWSA] mollusc metagenome; gill 40 cm from animal A
1366
1292
-
Asn
GTT
[ENA]
¢þ
>WENV170980424
MWSA01000123
[MWSA] mollusc metagenome; gill 40 cm from animal A
1539
1450
-
Ser
TGA
[ENA]
¢þ
>WENV170980463
MWSA01003951
[MWSA] mollusc metagenome; gill 40 cm from animal A
1820
1745
-
Gln
CTG
[ENA]
¢þ
>WENV170980466
MWSA01004306
[MWSA] mollusc metagenome; gill 40 cm from animal A
2056
1983
-
Gly
CCC
[ENA]
¢þ
>WENV170980441
MWSA01001670
[MWSA] mollusc metagenome; gill 40 cm from animal A
2110
2035
-
Phe
GAA
[ENA]
¢þ
>WENV170980470
MWSA01004443
[MWSA] mollusc metagenome; gill 40 cm from animal A
2291
2364
+
Gly
CCC
[ENA]
¢þ
>WENV170980435
MWSA01001099
[MWSA] mollusc metagenome; gill 40 cm from animal A
2526
2451
-
Thr
TGT
[ENA]
¢þ
>WENV170980443
MWSA01001793
[MWSA] mollusc metagenome; gill 40 cm from animal A
2627
2553
-
Val
CAC
[ENA]
¢þ
>WENV170980437
MWSA01001326
[MWSA] mollusc metagenome; gill 40 cm from animal A
2713
2787
+
Gln
TTG
[ENA]
¢þ
>WENV170980464
MWSA01003969
[MWSA] mollusc metagenome; gill 40 cm from animal A
2897
2986
+
Ser
CGA
[ENA]
¢þ
>WENV170980461
MWSA01003817
[MWSA] mollusc metagenome; gill 40 cm from animal A
3556
3480
-
Arg
CCT
[ENA]
¢þ
>WENV170980469
MWSA01004441
[MWSA] mollusc metagenome; gill 40 cm from animal A
3726
3640
-
Leu
CAA
[ENA]
¢þ
>WENV170980419
MWSA01000053
[MWSA] mollusc metagenome; gill 40 cm from animal A
3881
3807
-
Val
CAC
[ENA]
¢þ
>WENV170980450
MWSA01002897
[MWSA] mollusc metagenome; gill 40 cm from animal A
4654
4729
+
Thr
TGT
[ENA]
¢þ
>WENV170980455
MWSA01003475
[MWSA] mollusc metagenome; gill 40 cm from animal A
11437
11351
-
Leu
CAG
[ENA]
¢þ
>WENV170980459
MWSA01003696
[MWSA] mollusc metagenome; gill 40 cm from animal A
13497
13422
-
Glu
TTC
[ENA]
¢þ
>WENV170980465
MWSA01004188
[MWSA] mollusc metagenome; gill 40 cm from animal A
13584
13494
-
Ser
GGA
[ENA]
¢þ
>WENV170980431
MWSA01000731
[MWSA] mollusc metagenome; gill 40 cm from animal A
14170
14095
-
Glu
TTC
[ENA]
¢þ
>WENV170980430
MWSA01000731
[MWSA] mollusc metagenome; gill 40 cm from animal A
14262
14187
-
Ala
GGC
[ENA]
¢þ
>WENV170980473
MWSA01004674
[MWSA] mollusc metagenome; gill 40 cm from animal A
27671
27595
-
Met
CAT
[ENA]
¢þ
>WENV170980445
MWSA01002008
[MWSA] mollusc metagenome; gill 40 cm from animal A
70229
70153
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK