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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA gene List
[MWSB] mollusc metagenome; gill 31 cm from animal A
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170980521
MWSB01002770
[MWSB] mollusc metagenome; gill 31 cm from animal A
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV170980522
MWSB01002791
[MWSB] mollusc metagenome; gill 31 cm from animal A
8
81
+
Cys
GCA
[ENA]
¢þ
>WENV170980497
MWSB01001203
[MWSB] mollusc metagenome; gill 31 cm from animal A
10
99
+
Ser
CGA
[ENA]
¢þ
>WENV170980517
MWSB01002671
[MWSB] mollusc metagenome; gill 31 cm from animal A
17
93
+
Val
GAC
[ENA]
¢þ
>WENV170980498
MWSB01001207
[MWSB] mollusc metagenome; gill 31 cm from animal A
21
96
+
Lys
TTT
[ENA]
¢þ
>WENV170980482
MWSB01000019
[MWSB] mollusc metagenome; gill 31 cm from animal A
22
98
+
Met
CAT
[ENA]
¢þ
>WENV170980486
MWSB01000064
[MWSB] mollusc metagenome; gill 31 cm from animal A
23
99
+
Arg
CCG
[ENA]
¢þ
>WENV170980481
MWSB01000012
[MWSB] mollusc metagenome; gill 31 cm from animal A
24
99
+
Lys
TTT
[ENA]
¢þ
>WENV170980510
MWSB01001778
[MWSB] mollusc metagenome; gill 31 cm from animal A
24
99
+
Glu
TTC
[ENA]
¢þ
>WENV170980528
MWSB01005296
[MWSB] mollusc metagenome; gill 31 cm from animal A
71
-1
-
Asn
GTT
[ENA]
¢þ
>WENV170980493
MWSB01001159
[MWSB] mollusc metagenome; gill 31 cm from animal A
75
1
-
Ala
TGC
[ENA]
¢þ
>WENV170980489
MWSB01000250
[MWSB] mollusc metagenome; gill 31 cm from animal A
80
5
-
Phe
GAA
[ENA]
¢þ
>WENV170980530
MWSB01005663
[MWSB] mollusc metagenome; gill 31 cm from animal A
95
19
-
Pro
GGG
[ENA]
¢þ
>WENV170980512
MWSB01001857
[MWSB] mollusc metagenome; gill 31 cm from animal A
135
59
-
Asp
ATC
[ENA]
¢þ
>WENV170980523
MWSB01002791
[MWSB] mollusc metagenome; gill 31 cm from animal A
138
225
+
Leu
TAA
[ENA]
¢þ
>WENV170980490
MWSB01000703
[MWSB] mollusc metagenome; gill 31 cm from animal A
155
230
+
Gly
GCC
[ENA]
¢þ
>WENV170980491
MWSB01000943
[MWSB] mollusc metagenome; gill 31 cm from animal A
199
125
-
Asn
GTT
[ENA]
¢þ
>WENV170980480
MWSB01000011
[MWSB] mollusc metagenome; gill 31 cm from animal A
254
330
+
Met
CAT
[ENA]
¢þ
>WENV170980508
MWSB01001621
[MWSB] mollusc metagenome; gill 31 cm from animal A
287
211
-
Val
TAC
[ENA]
¢þ
>WENV170980525
MWSB01004784
[MWSB] mollusc metagenome; gill 31 cm from animal A
289
365
+
Pro
CGG
[ENA]
¢þ
>WENV170980509
MWSB01001704
[MWSB] mollusc metagenome; gill 31 cm from animal A
341
415
+
Gln
TTG
[ENA]
¢þ
>WENV170980505
MWSB01001334
[MWSB] mollusc metagenome; gill 31 cm from animal A
408
335
-
Gly
CCC
[ENA]
¢þ
>WENV170980518
MWSB01002677
[MWSB] mollusc metagenome; gill 31 cm from animal A
411
501
+
Ser
GGA
[ENA]
¢þ
>WENV170980515
MWSB01002656
[MWSB] mollusc metagenome; gill 31 cm from animal A
432
516
+
Leu
TAG
[ENA]
¢þ
>WENV170980492
MWSB01001159
[MWSB] mollusc metagenome; gill 31 cm from animal A
477
403
-
Asn
GTT
[ENA]
¢þ
>WENV170980526
MWSB01004887
[MWSB] mollusc metagenome; gill 31 cm from animal A
490
414
-
Met
CAT
[ENA]
¢þ
>WENV170980511
MWSB01001801
[MWSB] mollusc metagenome; gill 31 cm from animal A
500
576
+
Val
TAC
[ENA]
¢þ
>WENV170980507
MWSB01001421
[MWSB] mollusc metagenome; gill 31 cm from animal A
559
483
-
Asp
GTC
[ENA]
¢þ
>WENV170980506
MWSB01001421
[MWSB] mollusc metagenome; gill 31 cm from animal A
642
567
-
Val
TAC
[ENA]
¢þ
>WENV170980488
MWSB01000213
[MWSB] mollusc metagenome; gill 31 cm from animal A
666
590
-
Met
CAT
[ENA]
¢þ
>WENV170980487
MWSB01000145
[MWSB] mollusc metagenome; gill 31 cm from animal A
869
794
-
Phe
GAA
[ENA]
¢þ
>WENV170980513
MWSB01002130
[MWSB] mollusc metagenome; gill 31 cm from animal A
932
848
-
Leu
GAG
[ENA]
¢þ
>WENV170980485
MWSB01000061
[MWSB] mollusc metagenome; gill 31 cm from animal A
1018
1093
+
Thr
TGT
[ENA]
¢þ
>WENV170980524
MWSB01003235
[MWSB] mollusc metagenome; gill 31 cm from animal A
1238
1164
-
Asn
GTT
[ENA]
¢þ
>WENV170980529
MWSB01005359
[MWSB] mollusc metagenome; gill 31 cm from animal A
1539
1450
-
Ser
TGA
[ENA]
¢þ
>WENV170980531
MWSB01006982
[MWSB] mollusc metagenome; gill 31 cm from animal A
1820
1745
-
Gln
CTG
[ENA]
¢þ
>WENV170980483
MWSB01000031
[MWSB] mollusc metagenome; gill 31 cm from animal A
2110
2035
-
Phe
GAA
[ENA]
¢þ
>WENV170980504
MWSB01001267
[MWSB] mollusc metagenome; gill 31 cm from animal A
2190
2117
-
Gly
CCC
[ENA]
¢þ
>WENV170980514
MWSB01002583
[MWSB] mollusc metagenome; gill 31 cm from animal A
2193
2266
+
Gly
CCC
[ENA]
¢þ
>WENV170980484
MWSB01000051
[MWSB] mollusc metagenome; gill 31 cm from animal A
2607
2532
-
Thr
TGT
[ENA]
¢þ
>WENV170980527
MWSB01005111
[MWSB] mollusc metagenome; gill 31 cm from animal A
2627
2553
-
Val
CAC
[ENA]
¢þ
>WENV170980503
MWSB01001266
[MWSB] mollusc metagenome; gill 31 cm from animal A
2897
2986
+
Ser
CGA
[ENA]
¢þ
>WENV170980501
MWSB01001225
[MWSB] mollusc metagenome; gill 31 cm from animal A
3387
3312
-
Ala
TGC
[ENA]
¢þ
>WENV170980500
MWSB01001225
[MWSB] mollusc metagenome; gill 31 cm from animal A
3503
3427
-
Ile
GAT
[ENA]
¢þ
>WENV170980502
MWSB01001243
[MWSB] mollusc metagenome; gill 31 cm from animal A
3881
3807
-
Val
CAC
[ENA]
¢þ
>WENV170980520
MWSB01002735
[MWSB] mollusc metagenome; gill 31 cm from animal A
4800
4876
+
Arg
CCT
[ENA]
¢þ
>WENV170980499
MWSB01001209
[MWSB] mollusc metagenome; gill 31 cm from animal A
8846
8772
-
Gln
TTG
[ENA]
¢þ
>WENV170980519
MWSB01002693
[MWSB] mollusc metagenome; gill 31 cm from animal A
11437
11351
-
Leu
CAG
[ENA]
¢þ
>WENV170980479
MWSB01000005
[MWSB] mollusc metagenome; gill 31 cm from animal A
12902
12827
-
Glu
TTC
[ENA]
¢þ
>WENV170980496
MWSB01001198
[MWSB] mollusc metagenome; gill 31 cm from animal A
13584
13494
-
Ser
GGA
[ENA]
¢þ
>WENV170980495
MWSB01001195
[MWSB] mollusc metagenome; gill 31 cm from animal A
14104
14029
-
Glu
TTC
[ENA]
¢þ
>WENV170980494
MWSB01001195
[MWSB] mollusc metagenome; gill 31 cm from animal A
14196
14121
-
Ala
GGC
[ENA]
¢þ
>WENV170980516
MWSB01002663
[MWSB] mollusc metagenome; gill 31 cm from animal A
27671
27595
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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