This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[MWSD] mollusc metagenome; gill 40 cm from animal B
HIT:
64 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170980665
MWSD01000456
[MWSD] mollusc metagenome; gill 40 cm from animal B
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV170980663
MWSD01000359
[MWSD] mollusc metagenome; gill 40 cm from animal B
24
99
+
Lys
TTT
[ENA]
¢þ
>WENV170980652
MWSD01000251
[MWSD] mollusc metagenome; gill 40 cm from animal B
75
1
-
Val
CAC
[ENA]
¢þ
>WENV170980664
MWSD01000375
[MWSD] mollusc metagenome; gill 40 cm from animal B
94
5
-
Ser
TGA
[ENA]
¢þ
>WENV170980633
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
94
169
+
His
GTG
[ENA]
¢þ
>WENV170980666
MWSD01000487
[MWSD] mollusc metagenome; gill 40 cm from animal B
158
233
+
Ala
TGC
[ENA]
¢þ
>WENV170980623
MWSD01000132
[MWSD] mollusc metagenome; gill 40 cm from animal B
178
264
+
Leu
CAG
[ENA]
¢þ
>WENV170980654
MWSD01000257
[MWSD] mollusc metagenome; gill 40 cm from animal B
275
185
-
Ser
GGA
[ENA]
¢þ
>WENV170980634
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
522
600
+
Arg
TCG
[ENA]
¢þ
>WENV170980667
MWSD01000487
[MWSD] mollusc metagenome; gill 40 cm from animal B
707
781
+
Trp
CCA
[ENA]
¢þ
>WENV170980632
MWSD01000161
[MWSD] mollusc metagenome; gill 40 cm from animal B
825
749
-
Asp
GTC
[ENA]
¢þ
>WENV170980660
MWSD01000335
[MWSD] mollusc metagenome; gill 40 cm from animal B
852
927
+
Gly
GCC
[ENA]
¢þ
>WENV170980631
MWSD01000161
[MWSD] mollusc metagenome; gill 40 cm from animal B
908
833
-
Val
TAC
[ENA]
¢þ
>WENV170980668
MWSD01000609
[MWSD] mollusc metagenome; gill 40 cm from animal B
912
823
-
Ser
TGA
[ENA]
¢þ
>WENV170980635
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
972
1063
+
Ser
GGA
[ENA]
¢þ
>WENV170980636
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1072
1149
+
Cys
GCA
[ENA]
¢þ
>WENV170980637
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1163
1238
+
Thr
GGT
[ENA]
¢þ
>WENV170980638
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1391
1466
+
Gln
TTG
[ENA]
¢þ
>WENV170980639
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1507
1582
+
Val
TAC
[ENA]
¢þ
>WENV170980640
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1592
1668
+
Leu
CAA
[ENA]
¢þ
>WENV170980641
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1685
1772
+
Leu
TAA
[ENA]
¢þ
>WENV170980642
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1786
1875
+
Leu
CAG
[ENA]
¢þ
>WENV170980661
MWSD01000335
[MWSD] mollusc metagenome; gill 40 cm from animal B
1822
1896
+
Asn
GTT
[ENA]
¢þ
>WENV170980645
MWSD01000198
[MWSD] mollusc metagenome; gill 40 cm from animal B
1916
1830
-
Leu
CAA
[ENA]
¢þ
>WENV170980643
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
1924
2012
+
Leu
GAG
[ENA]
¢þ
>WENV170980659
MWSD01000321
[MWSD] mollusc metagenome; gill 40 cm from animal B
1951
1878
-
Gly
CCC
[ENA]
¢þ
>WENV170980662
MWSD01000335
[MWSD] mollusc metagenome; gill 40 cm from animal B
1962
2037
+
Ala
TGC
[ENA]
¢þ
>WENV170980644
MWSD01000192
[MWSD] mollusc metagenome; gill 40 cm from animal B
2018
2104
+
Thr
TGT
[ENA]
¢þ
>WENV170980657
MWSD01000304
[MWSD] mollusc metagenome; gill 40 cm from animal B
2400
2475
+
Phe
GAA
[ENA]
¢þ
>WENV170980655
MWSD01000261
[MWSD] mollusc metagenome; gill 40 cm from animal B
3009
2933
-
Asp
ATC
[ENA]
¢þ
>WENV170980650
MWSD01000251
[MWSD] mollusc metagenome; gill 40 cm from animal B
3363
3438
+
Ala
GGC
[ENA]
¢þ
>WENV170980651
MWSD01000251
[MWSD] mollusc metagenome; gill 40 cm from animal B
3455
3530
+
Glu
TTC
[ENA]
¢þ
>WENV170980658
MWSD01000315
[MWSD] mollusc metagenome; gill 40 cm from animal B
3834
3758
-
Met
CAT
[ENA]
¢þ
>WENV170980626
MWSD01000148
[MWSD] mollusc metagenome; gill 40 cm from animal B
3836
3911
+
Gly
GCC
[ENA]
¢þ
>WENV170980653
MWSD01000253
[MWSD] mollusc metagenome; gill 40 cm from animal B
4451
4377
-
Val
CAC
[ENA]
¢þ
>WENV170980656
MWSD01000289
[MWSD] mollusc metagenome; gill 40 cm from animal B
5241
5165
-
Met
CAT
[ENA]
¢þ
>WENV170980649
MWSD01000208
[MWSD] mollusc metagenome; gill 40 cm from animal B
5382
5458
+
Met
CAT
[ENA]
¢þ
>WENV170980646
MWSD01000201
[MWSD] mollusc metagenome; gill 40 cm from animal B
5721
5797
+
Val
GAC
[ENA]
¢þ
>WENV170980647
MWSD01000207
[MWSD] mollusc metagenome; gill 40 cm from animal B
7501
7577
+
Pro
TGG
[ENA]
¢þ
>WENV170980630
MWSD01000161
[MWSD] mollusc metagenome; gill 40 cm from animal B
7745
7661
-
Leu
TAG
[ENA]
¢þ
>WENV170980648
MWSD01000207
[MWSD] mollusc metagenome; gill 40 cm from animal B
8026
8101
+
His
GTG
[ENA]
¢þ
>WENV170980629
MWSD01000158
[MWSD] mollusc metagenome; gill 40 cm from animal B
8133
8209
+
Met
CAT
[ENA]
¢þ
>WENV170980625
MWSD01000144
[MWSD] mollusc metagenome; gill 40 cm from animal B
9054
8979
-
Lys
TTT
[ENA]
¢þ
>WENV170980618
MWSD01000097
[MWSD] mollusc metagenome; gill 40 cm from animal B
10078
10152
+
Gln
TTG
[ENA]
¢þ
>WENV170980627
MWSD01000148
[MWSD] mollusc metagenome; gill 40 cm from animal B
12677
12750
+
Cys
GCA
[ENA]
¢þ
>WENV170980628
MWSD01000148
[MWSD] mollusc metagenome; gill 40 cm from animal B
12807
12894
+
Leu
TAA
[ENA]
¢þ
>WENV170980622
MWSD01000107
[MWSD] mollusc metagenome; gill 40 cm from animal B
13509
13433
-
Pro
GGG
[ENA]
¢þ
>WENV170980624
MWSD01000135
[MWSD] mollusc metagenome; gill 40 cm from animal B
15571
15496
-
Trp
CCA
[ENA]
¢þ
>WENV170980614
MWSD01000035
[MWSD] mollusc metagenome; gill 40 cm from animal B
20257
20183
-
Asn
GTT
[ENA]
¢þ
>WENV170980619
MWSD01000097
[MWSD] mollusc metagenome; gill 40 cm from animal B
20752
20836
+
Tyr
GTA
[ENA]
¢þ
>WENV170980620
MWSD01000097
[MWSD] mollusc metagenome; gill 40 cm from animal B
21012
21085
+
Gly
TCC
[ENA]
¢þ
>WENV170980621
MWSD01000097
[MWSD] mollusc metagenome; gill 40 cm from animal B
21123
21198
+
Thr
GGT
[ENA]
¢þ
>WENV170980605
MWSD01000002
[MWSD] mollusc metagenome; gill 40 cm from animal B
21815
21891
+
Arg
CCG
[ENA]
¢þ
>WENV170980616
MWSD01000042
[MWSD] mollusc metagenome; gill 40 cm from animal B
22986
23075
+
Ser
CGA
[ENA]
¢þ
>WENV170980608
MWSD01000013
[MWSD] mollusc metagenome; gill 40 cm from animal B
30338
30263
-
Thr
CGT
[ENA]
¢þ
>WENV170980609
MWSD01000029
[MWSD] mollusc metagenome; gill 40 cm from animal B
33337
33413
+
Ile
GAT
[ENA]
¢þ
>WENV170980610
MWSD01000029
[MWSD] mollusc metagenome; gill 40 cm from animal B
33453
33528
+
Ala
TGC
[ENA]
¢þ
>WENV170980606
MWSD01000009
[MWSD] mollusc metagenome; gill 40 cm from animal B
37144
37236
+
Ser
GCT
[ENA]
¢þ
>WENV170980607
MWSD01000009
[MWSD] mollusc metagenome; gill 40 cm from animal B
37300
37376
+
Arg
ACG
[ENA]
¢þ
>WENV170980611
MWSD01000029
[MWSD] mollusc metagenome; gill 40 cm from animal B
42151
42226
+
Thr
TGT
[ENA]
¢þ
>WENV170980617
MWSD01000051
[MWSD] mollusc metagenome; gill 40 cm from animal B
54378
54462
+
Leu
GAG
[ENA]
¢þ
>WENV170980615
MWSD01000036
[MWSD] mollusc metagenome; gill 40 cm from animal B
54499
54575
+
Arg
CCT
[ENA]
¢þ
>WENV170980612
MWSD01000029
[MWSD] mollusc metagenome; gill 40 cm from animal B
74274
74350
+
Met
CAT
[ENA]
¢þ
>WENV170980613
MWSD01000029
[MWSD] mollusc metagenome; gill 40 cm from animal B
77271
77195
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK