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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[MWSE] mollusc metagenome; gill 28 cm from animal B
HIT:
57 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170980681
MWSE01000009
[MWSE] mollusc metagenome; gill 28 cm from animal B
121
32
-
Ser
TGA
[ENA]
¢þ
>WENV170980708
MWSE01000095
[MWSE] mollusc metagenome; gill 28 cm from animal B
234
309
+
Trp
CCA
[ENA]
¢þ
>WENV170980706
MWSE01000085
[MWSE] mollusc metagenome; gill 28 cm from animal B
249
174
-
Thr
GGT
[ENA]
¢þ
>WENV170980691
MWSE01000045
[MWSE] mollusc metagenome; gill 28 cm from animal B
275
201
-
Gln
TTG
[ENA]
¢þ
>WENV170980705
MWSE01000085
[MWSE] mollusc metagenome; gill 28 cm from animal B
360
287
-
Gly
TCC
[ENA]
¢þ
>WENV170980704
MWSE01000085
[MWSE] mollusc metagenome; gill 28 cm from animal B
620
536
-
Tyr
GTA
[ENA]
¢þ
>WENV170980689
MWSE01000040
[MWSE] mollusc metagenome; gill 28 cm from animal B
975
1051
+
Asp
ATC
[ENA]
¢þ
>WENV170980709
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
1086
1161
+
Gly
GCC
[ENA]
¢þ
>WENV170980710
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
2056
2130
+
Asn
GTT
[ENA]
¢þ
>WENV170980711
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
2243
2318
+
Ala
TGC
[ENA]
¢þ
>WENV170980712
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
2612
2686
+
Trp
CCA
[ENA]
¢þ
>WENV170980713
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
2711
2786
+
His
GTG
[ENA]
¢þ
>WENV170980685
MWSE01000030
[MWSE] mollusc metagenome; gill 28 cm from animal B
2868
2793
-
Phe
GAA
[ENA]
¢þ
>WENV170980714
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
2891
2969
+
Arg
TCG
[ENA]
¢þ
>WENV170980725
MWSE01000119
[MWSE] mollusc metagenome; gill 28 cm from animal B
2960
3036
+
Met
CAT
[ENA]
¢þ
>WENV170980715
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
3341
3432
+
Ser
GGA
[ENA]
¢þ
>WENV170980695
MWSE01000056
[MWSE] mollusc metagenome; gill 28 cm from animal B
3374
3448
+
Asn
GTT
[ENA]
¢þ
>WENV170980716
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
3441
3518
+
Cys
GCA
[ENA]
¢þ
>WENV170980717
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
3532
3607
+
Thr
GGT
[ENA]
¢þ
>WENV170980718
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
3760
3835
+
Gln
TTG
[ENA]
¢þ
>WENV170980719
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
3876
3951
+
Val
TAC
[ENA]
¢þ
>WENV170980707
MWSE01000092
[MWSE] mollusc metagenome; gill 28 cm from animal B
3943
3867
-
Val
GAC
[ENA]
¢þ
>WENV170980720
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
3961
4037
+
Leu
CAA
[ENA]
¢þ
>WENV170980721
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
4054
4141
+
Leu
TAA
[ENA]
¢þ
>WENV170980722
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
4155
4244
+
Leu
CAG
[ENA]
¢þ
>WENV170980700
MWSE01000063
[MWSE] mollusc metagenome; gill 28 cm from animal B
4284
4208
-
Asp
GTC
[ENA]
¢þ
>WENV170980723
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
4293
4381
+
Leu
GAG
[ENA]
¢þ
>WENV170980699
MWSE01000063
[MWSE] mollusc metagenome; gill 28 cm from animal B
4367
4292
-
Val
TAC
[ENA]
¢þ
>WENV170980724
MWSE01000101
[MWSE] mollusc metagenome; gill 28 cm from animal B
4387
4473
+
Thr
TGT
[ENA]
¢þ
>WENV170980678
MWSE01000009
[MWSE] mollusc metagenome; gill 28 cm from animal B
5760
5835
+
Gly
GCC
[ENA]
¢þ
>WENV170980679
MWSE01000009
[MWSE] mollusc metagenome; gill 28 cm from animal B
5913
5986
+
Cys
GCA
[ENA]
¢þ
>WENV170980680
MWSE01000009
[MWSE] mollusc metagenome; gill 28 cm from animal B
6043
6130
+
Leu
TAA
[ENA]
¢þ
>WENV170980683
MWSE01000019
[MWSE] mollusc metagenome; gill 28 cm from animal B
6070
5995
-
Lys
TTT
[ENA]
¢þ
>WENV170980684
MWSE01000030
[MWSE] mollusc metagenome; gill 28 cm from animal B
7128
7055
-
Gly
CCC
[ENA]
¢þ
>WENV170980703
MWSE01000081
[MWSE] mollusc metagenome; gill 28 cm from animal B
8556
8482
-
Val
CAC
[ENA]
¢þ
>WENV170980698
MWSE01000063
[MWSE] mollusc metagenome; gill 28 cm from animal B
11203
11119
-
Leu
TAG
[ENA]
¢þ
>WENV170980701
MWSE01000081
[MWSE] mollusc metagenome; gill 28 cm from animal B
11844
11919
+
Ala
GGC
[ENA]
¢þ
>WENV170980702
MWSE01000081
[MWSE] mollusc metagenome; gill 28 cm from animal B
11936
12011
+
Glu
TTC
[ENA]
¢þ
>WENV170980697
MWSE01000057
[MWSE] mollusc metagenome; gill 28 cm from animal B
15032
14956
-
Arg
ACG
[ENA]
¢þ
>WENV170980696
MWSE01000057
[MWSE] mollusc metagenome; gill 28 cm from animal B
15188
15096
-
Ser
GCT
[ENA]
¢þ
>WENV170980688
MWSE01000034
[MWSE] mollusc metagenome; gill 28 cm from animal B
20333
20258
-
Thr
TGT
[ENA]
¢þ
>WENV170980690
MWSE01000043
[MWSE] mollusc metagenome; gill 28 cm from animal B
24383
24469
+
Leu
CAG
[ENA]
¢þ
>WENV170980687
MWSE01000034
[MWSE] mollusc metagenome; gill 28 cm from animal B
29031
28956
-
Ala
TGC
[ENA]
¢þ
>WENV170980686
MWSE01000034
[MWSE] mollusc metagenome; gill 28 cm from animal B
29147
29071
-
Ile
GAT
[ENA]
¢þ
>WENV170980692
MWSE01000050
[MWSE] mollusc metagenome; gill 28 cm from animal B
34867
34943
+
Pro
TGG
[ENA]
¢þ
>WENV170980693
MWSE01000050
[MWSE] mollusc metagenome; gill 28 cm from animal B
35025
35101
+
Arg
TCT
[ENA]
¢þ
>WENV170980694
MWSE01000050
[MWSE] mollusc metagenome; gill 28 cm from animal B
35180
35255
+
His
GTG
[ENA]
¢þ
>WENV170980676
MWSE01000007
[MWSE] mollusc metagenome; gill 28 cm from animal B
55257
55181
-
Arg
CCT
[ENA]
¢þ
>WENV170980677
MWSE01000008
[MWSE] mollusc metagenome; gill 28 cm from animal B
61394
61478
+
Leu
GAG
[ENA]
¢þ
>WENV170980682
MWSE01000013
[MWSE] mollusc metagenome; gill 28 cm from animal B
65634
65558
-
Pro
GGG
[ENA]
¢þ
>WENV170980669
MWSE01000002
[MWSE] mollusc metagenome; gill 28 cm from animal B
100484
100573
+
Ser
CGA
[ENA]
¢þ
>WENV170980672
MWSE01000004
[MWSE] mollusc metagenome; gill 28 cm from animal B
104654
104729
+
Thr
CGT
[ENA]
¢þ
>WENV170980671
MWSE01000003
[MWSE] mollusc metagenome; gill 28 cm from animal B
119377
119291
-
Leu
CAA
[ENA]
¢þ
>WENV170980673
MWSE01000004
[MWSE] mollusc metagenome; gill 28 cm from animal B
141665
141741
+
Pro
CGG
[ENA]
¢þ
>WENV170980674
MWSE01000004
[MWSE] mollusc metagenome; gill 28 cm from animal B
144663
144587
-
Met
CAT
[ENA]
¢þ
>WENV170980670
MWSE01000003
[MWSE] mollusc metagenome; gill 28 cm from animal B
167473
167563
+
Ser
GGA
[ENA]
¢þ
>WENV170980675
MWSE01000005
[MWSE] mollusc metagenome; gill 28 cm from animal B
235604
235529
-
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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