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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[NFYU] gut metagenome; feces
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170999729
NFYU01002603
[NFYU] gut metagenome; feces
73
148
+
His
GTG
[ENA]
¢þ
>WENV170999723
NFYU01001962
[NFYU] gut metagenome; feces
196
271
+
His
GTG
[ENA]
¢þ
>WENV170999730
NFYU01002603
[NFYU] gut metagenome; feces
222
297
+
Arg
ACG
[ENA]
¢þ
>WENV170999713
NFYU01000371
[NFYU] gut metagenome; feces
225
305
+
Cys
GCA
[ENA]
¢þ
>WENV170999716
NFYU01000626
[NFYU] gut metagenome; feces
251
338
+
Ser
GCT
[ENA]
¢þ
>WENV170999731
NFYU01002871
[NFYU] gut metagenome; feces
265
340
+
Ile
GAT
[ENA]
¢þ
>WENV170999718
NFYU01001323
[NFYU] gut metagenome; feces
278
203
-
Ala
TGC
[ENA]
¢þ
>WENV170999726
NFYU01002327
[NFYU] gut metagenome; feces
322
249
-
Ala
TGC
[ENA]
¢þ
>WENV170999717
NFYU01001019
[NFYU] gut metagenome; feces
353
280
-
Pro
TGG
[ENA]
¢þ
>WENV170999728
NFYU01002375
[NFYU] gut metagenome; feces
368
445
+
Ala
TGC
[ENA]
¢þ
>WENV170999719
NFYU01001352
[NFYU] gut metagenome; feces
403
476
+
Gln
TTG
[ENA]
¢þ
>WENV170999714
NFYU01000371
[NFYU] gut metagenome; feces
475
551
+
Leu
TAA
[ENA]
¢þ
>WENV170999720
NFYU01001352
[NFYU] gut metagenome; feces
482
555
+
Asp
GTC
[ENA]
¢þ
>WENV170999724
NFYU01002278
[NFYU] gut metagenome; feces
489
581
+
Ser
GCT
[ENA]
¢þ
>WENV170999715
NFYU01000455
[NFYU] gut metagenome; feces
513
437
-
Met
CAT
[ENA]
¢þ
>WENV170999727
NFYU01002372
[NFYU] gut metagenome; feces
525
451
-
Asp
GTC
[ENA]
¢þ
>WENV170999722
NFYU01001859
[NFYU] gut metagenome; feces
537
610
+
Gln
TTG
[ENA]
¢þ
>WENV170999725
NFYU01002281
[NFYU] gut metagenome; feces
547
619
+
Trp
CCA
[ENA]
¢þ
>WENV170999732
NFYU01003243
[NFYU] gut metagenome; feces
672
599
-
Ile
GAT
[ENA]
¢þ
>WENV170999721
NFYU01001809
[NFYU] gut metagenome; feces
677
594
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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