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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[NFYV] gut metagenome; feces
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170999749
NFYV01002603
[NFYV] gut metagenome; feces
73
148
+
His
GTG
[ENA]
¢þ
>WENV170999743
NFYV01001962
[NFYV] gut metagenome; feces
196
271
+
His
GTG
[ENA]
¢þ
>WENV170999750
NFYV01002603
[NFYV] gut metagenome; feces
222
297
+
Arg
ACG
[ENA]
¢þ
>WENV170999733
NFYV01000371
[NFYV] gut metagenome; feces
225
305
+
Cys
GCA
[ENA]
¢þ
>WENV170999736
NFYV01000626
[NFYV] gut metagenome; feces
251
338
+
Ser
GCT
[ENA]
¢þ
>WENV170999751
NFYV01002871
[NFYV] gut metagenome; feces
265
340
+
Ile
GAT
[ENA]
¢þ
>WENV170999738
NFYV01001323
[NFYV] gut metagenome; feces
278
203
-
Ala
TGC
[ENA]
¢þ
>WENV170999746
NFYV01002327
[NFYV] gut metagenome; feces
322
249
-
Ala
TGC
[ENA]
¢þ
>WENV170999737
NFYV01001019
[NFYV] gut metagenome; feces
353
280
-
Pro
TGG
[ENA]
¢þ
>WENV170999748
NFYV01002375
[NFYV] gut metagenome; feces
368
445
+
Ala
TGC
[ENA]
¢þ
>WENV170999739
NFYV01001352
[NFYV] gut metagenome; feces
403
476
+
Gln
TTG
[ENA]
¢þ
>WENV170999734
NFYV01000371
[NFYV] gut metagenome; feces
475
551
+
Leu
TAA
[ENA]
¢þ
>WENV170999740
NFYV01001352
[NFYV] gut metagenome; feces
482
555
+
Asp
GTC
[ENA]
¢þ
>WENV170999744
NFYV01002278
[NFYV] gut metagenome; feces
489
581
+
Ser
GCT
[ENA]
¢þ
>WENV170999735
NFYV01000455
[NFYV] gut metagenome; feces
513
437
-
Met
CAT
[ENA]
¢þ
>WENV170999747
NFYV01002372
[NFYV] gut metagenome; feces
525
451
-
Asp
GTC
[ENA]
¢þ
>WENV170999742
NFYV01001859
[NFYV] gut metagenome; feces
537
610
+
Gln
TTG
[ENA]
¢þ
>WENV170999745
NFYV01002281
[NFYV] gut metagenome; feces
547
619
+
Trp
CCA
[ENA]
¢þ
>WENV170999752
NFYV01003243
[NFYV] gut metagenome; feces
672
599
-
Ile
GAT
[ENA]
¢þ
>WENV170999741
NFYV01001809
[NFYV] gut metagenome; feces
677
594
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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