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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[NFYX] gut metagenome; feces
HIT:
94 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170999851
NFYX01011410
[NFYX] gut metagenome; feces
4
78
+
Gly
TCC
[ENA]
¢þ
>WENV170999826
NFYX01008511
[NFYX] gut metagenome; feces
5
79
+
Gln
TTG
[ENA]
¢þ
>WENV170999803
NFYX01006194
[NFYX] gut metagenome; feces
5
92
+
Ser
CGA
[ENA]
¢þ
>WENV170999815
NFYX01007314
[NFYX] gut metagenome; feces
35
119
+
Tyr
GTA
[ENA]
¢þ
>WENV170999782
NFYX01003701
[NFYX] gut metagenome; feces
37
111
+
Arg
TCT
[ENA]
¢þ
>WENV170999772
NFYX01002484
[NFYX] gut metagenome; feces
54
129
+
Phe
GAA
[ENA]
¢þ
>WENV170999807
NFYX01006717
[NFYX] gut metagenome; feces
75
149
+
Arg
CCT
[ENA]
¢þ
>WENV170999797
NFYX01005451
[NFYX] gut metagenome; feces
80
4
-
His
GTG
[ENA]
¢þ
>WENV170999852
NFYX01011410
[NFYX] gut metagenome; feces
84
170
+
Met
CAT
[ENA]
¢þ
>WENV170999825
NFYX01008323
[NFYX] gut metagenome; feces
145
70
-
Pro
TGG
[ENA]
¢þ
>WENV170999789
NFYX01004720
[NFYX] gut metagenome; feces
146
232
+
Ser
GCT
[ENA]
¢þ
>WENV170999792
NFYX01004980
[NFYX] gut metagenome; feces
163
89
-
Glu
CTC
[ENA]
¢þ
>WENV170999774
NFYX01002596
[NFYX] gut metagenome; feces
167
94
-
Met
CAT
[ENA]
¢þ
>WENV170999783
NFYX01003701
[NFYX] gut metagenome; feces
192
267
+
Pro
TGG
[ENA]
¢þ
>WENV170999799
NFYX01005505
[NFYX] gut metagenome; feces
213
140
-
Met
CAT
[ENA]
¢þ
>WENV170999800
NFYX01005692
[NFYX] gut metagenome; feces
224
300
+
Ile
GAT
[ENA]
¢þ
>WENV170999838
NFYX01009821
[NFYX] gut metagenome; feces
248
323
+
Arg
CCT
[ENA]
¢þ
>WENV170999822
NFYX01007761
[NFYX] gut metagenome; feces
264
180
-
Leu
TAA
[ENA]
¢þ
>WENV170999759
NFYX01000002
[NFYX] gut metagenome; feces
273
191
-
Leu
TAA
[ENA]
¢þ
>WENV170999791
NFYX01004956
[NFYX] gut metagenome; feces
274
200
-
Ala
TGC
[ENA]
¢þ
>WENV170999763
NFYX01000288
[NFYX] gut metagenome; feces
304
387
+
Gln
TTG
[ENA]
¢þ
>WENV170999778
NFYX01003076
[NFYX] gut metagenome; feces
314
387
+
Gly
CCC
[ENA]
¢þ
>WENV170999801
NFYX01005692
[NFYX] gut metagenome; feces
323
398
+
Ala
TGC
[ENA]
¢þ
>WENV170999773
NFYX01002520
[NFYX] gut metagenome; feces
339
265
-
Trp
CCA
[ENA]
¢þ
>WENV170999802
NFYX01005813
[NFYX] gut metagenome; feces
340
270
-
Gln
TTG
[ENA]
¢þ
>WENV170999844
NFYX01010393
[NFYX] gut metagenome; feces
345
431
+
Leu
CAA
[ENA]
¢þ
>WENV170999780
NFYX01003355
[NFYX] gut metagenome; feces
353
429
+
Met
CAT
[ENA]
¢þ
>WENV170999790
NFYX01004956
[NFYX] gut metagenome; feces
354
280
-
Ile
GAT
[ENA]
¢þ
>WENV170999829
NFYX01008619
[NFYX] gut metagenome; feces
358
445
+
Leu
TAA
[ENA]
¢þ
>WENV170999839
NFYX01009857
[NFYX] gut metagenome; feces
369
445
+
Ile
GAT
[ENA]
¢þ
>WENV170999841
NFYX01010172
[NFYX] gut metagenome; feces
373
447
+
Arg
CCT
[ENA]
¢þ
>WENV170999814
NFYX01007312
[NFYX] gut metagenome; feces
375
303
-
Arg
TCT
[ENA]
¢þ
>WENV170999768
NFYX01001124
[NFYX] gut metagenome; feces
403
476
+
Gln
TTG
[ENA]
¢þ
>WENV170999767
NFYX01000813
[NFYX] gut metagenome; feces
411
337
-
Met
CAT
[ENA]
¢þ
>WENV170999777
NFYX01002958
[NFYX] gut metagenome; feces
423
498
+
Met
CAT
[ENA]
¢þ
>WENV170999784
NFYX01003701
[NFYX] gut metagenome; feces
435
507
+
Asn
GTT
[ENA]
¢þ
>WENV170999775
NFYX01002761
[NFYX] gut metagenome; feces
441
527
+
Ser
TGA
[ENA]
¢þ
>WENV170999806
NFYX01006622
[NFYX] gut metagenome; feces
448
523
+
Met
CAT
[ENA]
¢þ
>WENV170999813
NFYX01007312
[NFYX] gut metagenome; feces
454
382
-
Gly
TCC
[ENA]
¢þ
>WENV170999766
NFYX01000740
[NFYX] gut metagenome; feces
488
402
-
Leu
TAA
[ENA]
¢þ
>WENV170999836
NFYX01009332
[NFYX] gut metagenome; feces
488
413
-
Lys
TTT
[ENA]
¢þ
>WENV170999796
NFYX01005368
[NFYX] gut metagenome; feces
492
566
+
Thr
CGT
[ENA]
¢þ
>WENV170999770
NFYX01001944
[NFYX] gut metagenome; feces
496
412
-
Leu
GAG
[ENA]
¢þ
>WENV170999805
NFYX01006375
[NFYX] gut metagenome; feces
505
579
+
Arg
TCT
[ENA]
¢þ
>WENV170999785
NFYX01003701
[NFYX] gut metagenome; feces
514
588
+
Trp
CCA
[ENA]
¢þ
>WENV170999812
NFYX01007312
[NFYX] gut metagenome; feces
540
462
-
Lys
TTT
[ENA]
¢þ
>WENV170999817
NFYX01007744
[NFYX] gut metagenome; feces
544
458
-
Leu
TAA
[ENA]
¢þ
>WENV170999798
NFYX01005458
[NFYX] gut metagenome; feces
546
636
+
Ile
TAT
[ENA]
¢þ
>WENV170999830
NFYX01008692
[NFYX] gut metagenome; feces
550
621
+
Met
CAT
[ENA]
¢þ
>WENV170999781
NFYX01003359
[NFYX] gut metagenome; feces
566
650
+
Leu
CAA
[ENA]
¢þ
>WENV170999843
NFYX01010362
[NFYX] gut metagenome; feces
584
510
-
Asn
GTT
[ENA]
¢þ
>WENV170999771
NFYX01002482
[NFYX] gut metagenome; feces
587
661
+
Glu
TTC
[ENA]
¢þ
>WENV170999847
NFYX01010750
[NFYX] gut metagenome; feces
593
509
-
Leu
TAG
[ENA]
¢þ
>WENV170999794
NFYX01005023
[NFYX] gut metagenome; feces
601
529
-
Glu
TTC
[ENA]
¢þ
>WENV170999821
NFYX01007761
[NFYX] gut metagenome; feces
618
543
-
His
GTG
[ENA]
¢þ
>WENV170999795
NFYX01005159
[NFYX] gut metagenome; feces
663
581
-
Leu
TAA
[ENA]
¢þ
>WENV170999842
NFYX01010362
[NFYX] gut metagenome; feces
684
608
-
Asn
GTT
[ENA]
¢þ
>WENV170999787
NFYX01003958
[NFYX] gut metagenome; feces
687
761
+
Met
CAT
[ENA]
¢þ
>WENV170999850
NFYX01010903
[NFYX] gut metagenome; feces
694
620
-
Ala
GGC
[ENA]
¢þ
>WENV170999820
NFYX01007761
[NFYX] gut metagenome; feces
776
703
-
Asn
GTT
[ENA]
¢þ
>WENV170999762
NFYX01000166
[NFYX] gut metagenome; feces
785
710
-
Thr
TGT
[ENA]
¢þ
>WENV170999828
NFYX01008579
[NFYX] gut metagenome; feces
794
721
-
Gln
CTG
[ENA]
¢þ
>WENV170999760
NFYX01000132
[NFYX] gut metagenome; feces
815
741
-
Cys
GCA
[ENA]
¢þ
>WENV170999835
NFYX01009035
[NFYX] gut metagenome; feces
819
747
-
Ile
TAT
[ENA]
¢þ
>WENV170999840
NFYX01010112
[NFYX] gut metagenome; feces
839
921
+
Leu
TAG
[ENA]
¢þ
>WENV170999788
NFYX01004485
[NFYX] gut metagenome; feces
858
782
-
Asn
GTT
[ENA]
¢þ
>WENV170999786
NFYX01003953
[NFYX] gut metagenome; feces
874
799
-
Arg
TCG
[ENA]
¢þ
>WENV170999761
NFYX01000166
[NFYX] gut metagenome; feces
875
787
-
Leu
TAA
[ENA]
¢þ
>WENV170999831
NFYX01008896
[NFYX] gut metagenome; feces
904
821
-
Leu
TAG
[ENA]
¢þ
>WENV170999827
NFYX01008579
[NFYX] gut metagenome; feces
910
837
-
Gln
CTG
[ENA]
¢þ
>WENV170999845
NFYX01010704
[NFYX] gut metagenome; feces
920
993
+
SeC
TCA
[ENA]
¢þ
>WENV170999846
NFYX01010704
[NFYX] gut metagenome; feces
1012
1086
+
Trp
CCA
[ENA]
¢þ
>WENV170999793
NFYX01005023
[NFYX] gut metagenome; feces
1016
942
-
Glu
TTC
[ENA]
¢þ
>WENV170999776
NFYX01002868
[NFYX] gut metagenome; feces
1201
1128
-
Lys
TTT
[ENA]
¢þ
>WENV170999834
NFYX01008933
[NFYX] gut metagenome; feces
1364
1279
-
Ser
TGA
[ENA]
¢þ
>WENV170999819
NFYX01007761
[NFYX] gut metagenome; feces
1370
1296
-
Glu
TTC
[ENA]
¢þ
>WENV170999816
NFYX01007348
[NFYX] gut metagenome; feces
1429
1343
-
Leu
CAA
[ENA]
¢þ
>WENV170999818
NFYX01007761
[NFYX] gut metagenome; feces
1515
1441
-
Gln
TTG
[ENA]
¢þ
>WENV170999833
NFYX01008933
[NFYX] gut metagenome; feces
1748
1673
-
Thr
TGT
[ENA]
¢þ
>WENV170999823
NFYX01008058
[NFYX] gut metagenome; feces
1757
1833
+
Met
CAT
[ENA]
¢þ
>WENV170999824
NFYX01008285
[NFYX] gut metagenome; feces
2053
2129
+
Leu
TAA
[ENA]
¢þ
>WENV170999848
NFYX01010825
[NFYX] gut metagenome; feces
2071
1998
-
Gln
TTG
[ENA]
¢þ
>WENV170999837
NFYX01009647
[NFYX] gut metagenome; feces
2074
2002
-
Met
CAT
[ENA]
¢þ
>WENV170999832
NFYX01008933
[NFYX] gut metagenome; feces
2360
2278
-
Leu
TAA
[ENA]
¢þ
>WENV170999765
NFYX01000623
[NFYX] gut metagenome; feces
2463
2388
-
His
GTG
[ENA]
¢þ
>WENV170999804
NFYX01006358
[NFYX] gut metagenome; feces
2553
2480
-
Gln
CTG
[ENA]
¢þ
>WENV170999764
NFYX01000623
[NFYX] gut metagenome; feces
2556
2481
-
Arg
ACG
[ENA]
¢þ
>WENV170999769
NFYX01001298
[NFYX] gut metagenome; feces
3213
3286
+
Gln
CTG
[ENA]
¢þ
>WENV170999849
NFYX01010900
[NFYX] gut metagenome; feces
3262
3187
-
Thr
TGT
[ENA]
¢þ
>WENV170999779
NFYX01003296
[NFYX] gut metagenome; feces
3761
3832
+
Gln
TTG
[ENA]
¢þ
>WENV170999808
NFYX01006983
[NFYX] gut metagenome; feces
4104
4178
+
Ala
GGC
[ENA]
¢þ
>WENV170999811
NFYX01006988
[NFYX] gut metagenome; feces
4626
4552
-
Phe
GAA
[ENA]
¢þ
>WENV170999810
NFYX01006988
[NFYX] gut metagenome; feces
4777
4703
-
Thr
TGT
[ENA]
¢þ
>WENV170999809
NFYX01006988
[NFYX] gut metagenome; feces
4860
4787
-
Sup
CTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK