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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[NFZH] gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV171002165
NFZH01000109
[NFZH] gut metagenome; feces
6
91
+
Leu
TAA
[ENA]
¢þ
>WENV171002164
NFZH01000072
[NFZH] gut metagenome; feces
15
86
+
Val
TAC
[ENA]
¢þ
>WENV171002166
NFZH01000198
[NFZH] gut metagenome; feces
473
544
+
Ile
GAT
[ENA]
¢þ
>WENV171002169
NFZH01000223
[NFZH] gut metagenome; feces
596
684
+
Cys
GCA
[ENA]
¢þ
>WENV171002180
NFZH01000273
[NFZH] gut metagenome; feces
706
635
-
His
GTG
[ENA]
¢þ
>WENV171002167
NFZH01000198
[NFZH] gut metagenome; feces
881
966
+
Leu
TAA
[ENA]
¢þ
>WENV171002168
NFZH01000198
[NFZH] gut metagenome; feces
1048
1132
+
Leu
TAG
[ENA]
¢þ
>WENV171002179
NFZH01000273
[NFZH] gut metagenome; feces
1072
1000
-
Arg
ACG
[ENA]
¢þ
>WENV171002178
NFZH01000273
[NFZH] gut metagenome; feces
1216
1145
-
Thr
TGT
[ENA]
¢þ
>WENV171002177
NFZH01000273
[NFZH] gut metagenome; feces
1441
1366
-
Asp
GTC
[ENA]
¢þ
>WENV171002176
NFZH01000273
[NFZH] gut metagenome; feces
1517
1444
-
Met
CAT
[ENA]
¢þ
>WENV171002184
NFZH01000384
[NFZH] gut metagenome; feces
1555
1480
-
Lys
TTT
[ENA]
¢þ
>WENV171002175
NFZH01000273
[NFZH] gut metagenome; feces
1737
1663
-
Lys
TTT
[ENA]
¢þ
>WENV171002174
NFZH01000273
[NFZH] gut metagenome; feces
2178
2105
-
Glu
TTC
[ENA]
¢þ
>WENV171002173
NFZH01000273
[NFZH] gut metagenome; feces
2265
2182
-
Tyr
GTA
[ENA]
¢þ
>WENV171002172
NFZH01000273
[NFZH] gut metagenome; feces
2493
2420
-
Asn
GTT
[ENA]
¢þ
>WENV171002171
NFZH01000273
[NFZH] gut metagenome; feces
3327
3255
-
Gly
TCC
[ENA]
¢þ
>WENV171002170
NFZH01000273
[NFZH] gut metagenome; feces
3416
3343
-
Pro
TGG
[ENA]
¢þ
>WENV171002181
NFZH01000352
[NFZH] gut metagenome; feces
3681
3752
+
Gln
TTG
[ENA]
¢þ
>WENV171002182
NFZH01000352
[NFZH] gut metagenome; feces
3999
4095
+
Glu
CTC
[ENA]
¢þ
>WENV171002183
NFZH01000352
[NFZH] gut metagenome; feces
4102
4194
+
Ile
TAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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