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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[NFZJ] gut metagenome; feces
HIT:
141 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV171002199
NFZJ01001205
[NFZJ] gut metagenome; feces
1
84
+
Tyr
GTA
[ENA]
¢þ
>WENV171002297
NFZJ01008871
[NFZJ] gut metagenome; feces
2
76
+
Glu
TTC
[ENA]
¢þ
>WENV171002265
NFZJ01006786
[NFZJ] gut metagenome; feces
2
77
+
Gln
TTG
[ENA]
¢þ
>WENV171002258
NFZJ01006040
[NFZJ] gut metagenome; feces
4
79
+
Gly
GCC
[ENA]
¢þ
>WENV171002209
NFZJ01002032
[NFZJ] gut metagenome; feces
9
83
+
Cys
GCA
[ENA]
¢þ
>WENV171002321
NFZJ01013244
[NFZJ] gut metagenome; feces
10
80
+
Gln
TTG
[ENA]
¢þ
>WENV171002319
NFZJ01012925
[NFZJ] gut metagenome; feces
34
105
+
Gly
TCC
[ENA]
¢þ
>WENV171002280
NFZJ01007274
[NFZJ] gut metagenome; feces
34
109
+
Arg
CCT
[ENA]
¢þ
>WENV171002230
NFZJ01003462
[NFZJ] gut metagenome; feces
41
112
+
Cys
GCA
[ENA]
¢þ
>WENV171002282
NFZJ01007415
[NFZJ] gut metagenome; feces
52
125
+
Phe
GAA
[ENA]
¢þ
>WENV171002309
NFZJ01010709
[NFZJ] gut metagenome; feces
73
147
+
Thr
TGT
[ENA]
¢þ
>WENV171002255
NFZJ01005830
[NFZJ] gut metagenome; feces
74
1
-
Lys
CTT
[ENA]
¢þ
>WENV171002259
NFZJ01006040
[NFZJ] gut metagenome; feces
82
154
+
Gly
TCC
[ENA]
¢þ
>WENV171002296
NFZJ01008779
[NFZJ] gut metagenome; feces
90
16
-
Arg
CCT
[ENA]
¢þ
>WENV171002190
NFZJ01000340
[NFZJ] gut metagenome; feces
90
165
+
Lys
TTT
[ENA]
¢þ
>WENV171002266
NFZJ01006786
[NFZJ] gut metagenome; feces
92
164
+
Arg
TCT
[ENA]
¢þ
>WENV171002194
NFZJ01000854
[NFZJ] gut metagenome; feces
96
22
-
Arg
TCT
[ENA]
¢þ
>WENV171002289
NFZJ01007883
[NFZJ] gut metagenome; feces
97
23
-
Arg
CCT
[ENA]
¢þ
>WENV171002303
NFZJ01009246
[NFZJ] gut metagenome; feces
110
37
-
Gly
GCC
[ENA]
¢þ
>WENV171002200
NFZJ01001307
[NFZJ] gut metagenome; feces
122
51
-
Gln
TTG
[ENA]
¢þ
>WENV171002263
NFZJ01006396
[NFZJ] gut metagenome; feces
134
49
-
Tyr
GTA
[ENA]
¢þ
>WENV171002242
NFZJ01005554
[NFZJ] gut metagenome; feces
138
212
+
Val
TAC
[ENA]
¢þ
>WENV171002310
NFZJ01010709
[NFZJ] gut metagenome; feces
165
247
+
Tyr
GTA
[ENA]
¢þ
>WENV171002267
NFZJ01006786
[NFZJ] gut metagenome; feces
170
246
+
Glu
TTC
[ENA]
¢þ
>WENV171002193
NFZJ01000854
[NFZJ] gut metagenome; feces
173
99
-
Gln
TTG
[ENA]
¢þ
>WENV171002291
NFZJ01008289
[NFZJ] gut metagenome; feces
174
102
-
Arg
CCG
[ENA]
¢þ
>WENV171002264
NFZJ01006622
[NFZJ] gut metagenome; feces
177
259
+
Tyr
GTA
[ENA]
¢þ
>WENV171002238
NFZJ01005245
[NFZJ] gut metagenome; feces
179
98
-
Leu
TAG
[ENA]
¢þ
>WENV171002208
NFZJ01001978
[NFZJ] gut metagenome; feces
186
270
+
Leu
TAG
[ENA]
¢þ
>WENV171002221
NFZJ01002610
[NFZJ] gut metagenome; feces
202
130
-
Gln
TTG
[ENA]
¢þ
>WENV171002305
NFZJ01009669
[NFZJ] gut metagenome; feces
213
142
-
Gln
TTG
[ENA]
¢þ
>WENV171002243
NFZJ01005554
[NFZJ] gut metagenome; feces
220
292
+
Asn
GTT
[ENA]
¢þ
>WENV171002292
NFZJ01008294
[NFZJ] gut metagenome; feces
231
305
+
Ile
GAT
[ENA]
¢þ
>WENV171002317
NFZJ01011821
[NFZJ] gut metagenome; feces
241
168
-
Asp
GTC
[ENA]
¢þ
>WENV171002234
NFZJ01005080
[NFZJ] gut metagenome; feces
243
158
-
Leu
TAA
[ENA]
¢þ
>WENV171002253
NFZJ01005784
[NFZJ] gut metagenome; feces
258
334
+
Met
CAT
[ENA]
¢þ
>WENV171002189
NFZJ01000201
[NFZJ] gut metagenome; feces
293
366
+
Gln
CTG
[ENA]
¢þ
>WENV171002244
NFZJ01005554
[NFZJ] gut metagenome; feces
297
368
+
Arg
CCG
[ENA]
¢þ
>WENV171002286
NFZJ01007634
[NFZJ] gut metagenome; feces
302
376
+
Sup
CTA
[ENA]
¢þ
>WENV171002293
NFZJ01008294
[NFZJ] gut metagenome; feces
316
390
+
Ala
TGC
[ENA]
¢þ
>WENV171002316
NFZJ01011821
[NFZJ] gut metagenome; feces
320
245
-
Met
CAT
[ENA]
¢þ
>WENV171002222
NFZJ01002854
[NFZJ] gut metagenome; feces
335
406
+
Gln
TTG
[ENA]
¢þ
>WENV171002192
NFZJ01000802
[NFZJ] gut metagenome; feces
344
419
+
Thr
CGT
[ENA]
¢þ
>WENV171002311
NFZJ01010709
[NFZJ] gut metagenome; feces
347
421
+
Thr
GGT
[ENA]
¢þ
>WENV171002245
NFZJ01005554
[NFZJ] gut metagenome; feces
374
448
+
Ile
GAT
[ENA]
¢þ
>WENV171002318
NFZJ01012502
[NFZJ] gut metagenome; feces
377
303
-
Arg
CCT
[ENA]
¢þ
>WENV171002240
NFZJ01005327
[NFZJ] gut metagenome; feces
379
304
-
Lys
TTT
[ENA]
¢þ
>WENV171002232
NFZJ01003937
[NFZJ] gut metagenome; feces
381
456
+
Gly
GCC
[ENA]
¢þ
>WENV171002281
NFZJ01007351
[NFZJ] gut metagenome; feces
385
472
+
Ser
TGA
[ENA]
¢þ
>WENV171002314
NFZJ01011658
[NFZJ] gut metagenome; feces
386
301
-
Ser
CGA
[ENA]
¢þ
>WENV171002236
NFZJ01005196
[NFZJ] gut metagenome; feces
390
317
-
Gln
CTG
[ENA]
¢þ
>WENV171002229
NFZJ01003418
[NFZJ] gut metagenome; feces
390
474
+
Leu
CAA
[ENA]
¢þ
>WENV171002239
NFZJ01005251
[NFZJ] gut metagenome; feces
391
464
+
Lys
TTT
[ENA]
¢þ
>WENV171002304
NFZJ01009574
[NFZJ] gut metagenome; feces
392
319
-
Gly
GCC
[ENA]
¢þ
>WENV171002217
NFZJ01002542
[NFZJ] gut metagenome; feces
430
516
+
Leu
CAA
[ENA]
¢þ
>WENV171002298
NFZJ01008871
[NFZJ] gut metagenome; feces
438
512
+
Glu
TTC
[ENA]
¢þ
>WENV171002325
NFZJ01013457
[NFZJ] gut metagenome; feces
448
374
-
Asp
GTC
[ENA]
¢þ
>WENV171002288
NFZJ01007669
[NFZJ] gut metagenome; feces
451
378
-
Thr
CGT
[ENA]
¢þ
>WENV171002246
NFZJ01005554
[NFZJ] gut metagenome; feces
452
524
+
Met
CAT
[ENA]
¢þ
>WENV171002254
NFZJ01005784
[NFZJ] gut metagenome; feces
466
542
+
Met
CAT
[ENA]
¢þ
>WENV171002231
NFZJ01003521
[NFZJ] gut metagenome; feces
500
428
-
Arg
CCT
[ENA]
¢þ
>WENV171002207
NFZJ01001976
[NFZJ] gut metagenome; feces
504
576
+
Ile
TAT
[ENA]
¢þ
>WENV171002313
NFZJ01011390
[NFZJ] gut metagenome; feces
505
580
+
Trp
CCA
[ENA]
¢þ
>WENV171002235
NFZJ01005196
[NFZJ] gut metagenome; feces
506
433
-
Gln
CTG
[ENA]
¢þ
>WENV171002247
NFZJ01005554
[NFZJ] gut metagenome; feces
526
602
+
His
GTG
[ENA]
¢þ
>WENV171002322
NFZJ01013346
[NFZJ] gut metagenome; feces
534
621
+
Ser
CGA
[ENA]
¢þ
>WENV171002324
NFZJ01013457
[NFZJ] gut metagenome; feces
547
473
-
Asp
GTC
[ENA]
¢þ
>WENV171002307
NFZJ01010464
[NFZJ] gut metagenome; feces
589
674
+
Leu
TAA
[ENA]
¢þ
>WENV171002323
NFZJ01013346
[NFZJ] gut metagenome; feces
632
707
+
Val
GAC
[ENA]
¢þ
>WENV171002268
NFZJ01006786
[NFZJ] gut metagenome; feces
669
744
+
Pro
TGG
[ENA]
¢þ
>WENV171002204
NFZJ01001807
[NFZJ] gut metagenome; feces
747
820
+
Gly
GCC
[ENA]
¢þ
>WENV171002195
NFZJ01000881
[NFZJ] gut metagenome; feces
771
845
+
Lys
TTT
[ENA]
¢þ
>WENV171002241
NFZJ01005476
[NFZJ] gut metagenome; feces
781
856
+
Arg
CCT
[ENA]
¢þ
>WENV171002233
NFZJ01004594
[NFZJ] gut metagenome; feces
788
715
-
Trp
CCA
[ENA]
¢þ
>WENV171002197
NFZJ01000925
[NFZJ] gut metagenome; feces
813
888
+
Gln
TTG
[ENA]
¢þ
>WENV171002308
NFZJ01010645
[NFZJ] gut metagenome; feces
834
746
-
Leu
TAA
[ENA]
¢þ
>WENV171002205
NFZJ01001807
[NFZJ] gut metagenome; feces
837
924
+
Leu
CAG
[ENA]
¢þ
>WENV171002256
NFZJ01005911
[NFZJ] gut metagenome; feces
854
928
+
Glu
TTC
[ENA]
¢þ
>WENV171002203
NFZJ01001782
[NFZJ] gut metagenome; feces
887
805
-
Leu
TAG
[ENA]
¢þ
>WENV171002287
NFZJ01007666
[NFZJ] gut metagenome; feces
897
823
-
Trp
CCA
[ENA]
¢þ
>WENV171002198
NFZJ01000925
[NFZJ] gut metagenome; feces
903
975
+
Arg
TCT
[ENA]
¢þ
>WENV171002269
NFZJ01006786
[NFZJ] gut metagenome; feces
906
980
+
Val
TAC
[ENA]
¢þ
>WENV171002218
NFZJ01002564
[NFZJ] gut metagenome; feces
918
1004
+
Leu
TAA
[ENA]
¢þ
>WENV171002206
NFZJ01001807
[NFZJ] gut metagenome; feces
932
1016
+
Leu
GAG
[ENA]
¢þ
>WENV171002196
NFZJ01000881
[NFZJ] gut metagenome; feces
949
1023
+
Met
CAT
[ENA]
¢þ
>WENV171002270
NFZJ01006786
[NFZJ] gut metagenome; feces
987
1061
+
Asn
GTT
[ENA]
¢þ
>WENV171002248
NFZJ01005554
[NFZJ] gut metagenome; feces
1095
1170
+
Cys
GCA
[ENA]
¢þ
>WENV171002315
NFZJ01011807
[NFZJ] gut metagenome; feces
1134
1061
-
Phe
GAA
[ENA]
¢þ
>WENV171002260
NFZJ01006041
[NFZJ] gut metagenome; feces
1143
1069
-
Met
CAT
[ENA]
¢þ
>WENV171002312
NFZJ01011166
[NFZJ] gut metagenome; feces
1193
1265
+
Thr
GGT
[ENA]
¢þ
>WENV171002262
NFZJ01006156
[NFZJ] gut metagenome; feces
1196
1119
-
His
GTG
[ENA]
¢þ
>WENV171002306
NFZJ01010082
[NFZJ] gut metagenome; feces
1205
1294
+
Ser
GCT
[ENA]
¢þ
>WENV171002326
NFZJ01013633
[NFZJ] gut metagenome; feces
1217
1143
-
Met
CAT
[ENA]
¢þ
>WENV171002271
NFZJ01006786
[NFZJ] gut metagenome; feces
1249
1321
+
Trp
CCA
[ENA]
¢þ
>WENV171002257
NFZJ01005911
[NFZJ] gut metagenome; feces
1269
1341
+
Glu
TTC
[ENA]
¢þ
>WENV171002219
NFZJ01002564
[NFZJ] gut metagenome; feces
1295
1370
+
Gly
GCC
[ENA]
¢þ
>WENV171002320
NFZJ01013189
[NFZJ] gut metagenome; feces
1295
1371
+
Met
CAT
[ENA]
¢þ
>WENV171002261
NFZJ01006156
[NFZJ] gut metagenome; feces
1309
1232
-
His
GTG
[ENA]
¢þ
>WENV171002295
NFZJ01008451
[NFZJ] gut metagenome; feces
1310
1227
-
Tyr
GTA
[ENA]
¢þ
>WENV171002220
NFZJ01002564
[NFZJ] gut metagenome; feces
1373
1445
+
Gly
TCC
[ENA]
¢þ
>WENV171002237
NFZJ01005202
[NFZJ] gut metagenome; feces
1391
1464
+
Lys
TTT
[ENA]
¢þ
>WENV171002272
NFZJ01006786
[NFZJ] gut metagenome; feces
1424
1496
+
Met
CAT
[ENA]
¢þ
>WENV171002290
NFZJ01007905
[NFZJ] gut metagenome; feces
1480
1553
+
Lys
TTT
[ENA]
¢þ
>WENV171002273
NFZJ01006786
[NFZJ] gut metagenome; feces
1498
1573
+
His
GTG
[ENA]
¢þ
>WENV171002226
NFZJ01003414
[NFZJ] gut metagenome; feces
1511
1584
+
Gly
GCC
[ENA]
¢þ
>WENV171002249
NFZJ01005554
[NFZJ] gut metagenome; feces
1605
1680
+
Lys
CTT
[ENA]
¢þ
>WENV171002227
NFZJ01003414
[NFZJ] gut metagenome; feces
1606
1691
+
Leu
TAA
[ENA]
¢þ
>WENV171002274
NFZJ01006786
[NFZJ] gut metagenome; feces
1659
1735
+
Cys
GCA
[ENA]
¢þ
>WENV171002300
NFZJ01009087
[NFZJ] gut metagenome; feces
1685
1598
-
Ser
TGA
[ENA]
¢þ
>WENV171002250
NFZJ01005554
[NFZJ] gut metagenome; feces
1700
1773
+
Lys
TTT
[ENA]
¢þ
>WENV171002228
NFZJ01003414
[NFZJ] gut metagenome; feces
1701
1774
+
Gly
GCC
[ENA]
¢þ
>WENV171002225
NFZJ01003183
[NFZJ] gut metagenome; feces
1732
1807
+
Trp
CCA
[ENA]
¢þ
>WENV171002294
NFZJ01008428
[NFZJ] gut metagenome; feces
1735
1809
+
Arg
TCT
[ENA]
¢þ
>WENV171002251
NFZJ01005554
[NFZJ] gut metagenome; feces
1779
1865
+
Tyr
GTA
[ENA]
¢þ
>WENV171002252
NFZJ01005554
[NFZJ] gut metagenome; feces
1877
1952
+
Phe
GAA
[ENA]
¢þ
>WENV171002299
NFZJ01009015
[NFZJ] gut metagenome; feces
1883
1955
+
Tyr
GTA
[ENA]
¢þ
>WENV171002275
NFZJ01006786
[NFZJ] gut metagenome; feces
1988
2064
+
Lys
CTT
[ENA]
¢þ
>WENV171002191
NFZJ01000784
[NFZJ] gut metagenome; feces
2019
2089
+
Gln
TTG
[ENA]
¢þ
>WENV171002214
NFZJ01002268
[NFZJ] gut metagenome; feces
2028
1956
-
Tyr
GTA
[ENA]
¢þ
>WENV171002276
NFZJ01006786
[NFZJ] gut metagenome; feces
2083
2156
+
Lys
TTT
[ENA]
¢þ
>WENV171002202
NFZJ01001556
[NFZJ] gut metagenome; feces
2258
2342
+
Leu
CAG
[ENA]
¢þ
>WENV171002277
NFZJ01006786
[NFZJ] gut metagenome; feces
2334
2417
+
Tyr
GTA
[ENA]
¢þ
>WENV171002213
NFZJ01002264
[NFZJ] gut metagenome; feces
2405
2321
-
Ser
GCT
[ENA]
¢þ
>WENV171002278
NFZJ01006786
[NFZJ] gut metagenome; feces
2566
2650
+
Leu
CAA
[ENA]
¢þ
>WENV171002212
NFZJ01002264
[NFZJ] gut metagenome; feces
2597
2524
-
Met
CAT
[ENA]
¢þ
>WENV171002216
NFZJ01002448
[NFZJ] gut metagenome; feces
2609
2683
+
Thr
TGT
[ENA]
¢þ
>WENV171002279
NFZJ01006786
[NFZJ] gut metagenome; feces
2658
2749
+
Leu
TAG
[ENA]
¢þ
>WENV171002211
NFZJ01002264
[NFZJ] gut metagenome; feces
2969
2896
-
Met
CAT
[ENA]
¢þ
>WENV171002201
NFZJ01001550
[NFZJ] gut metagenome; feces
3230
3157
-
Ala
GGC
[ENA]
¢þ
>WENV171002210
NFZJ01002264
[NFZJ] gut metagenome; feces
3238
3166
-
Gln
TTG
[ENA]
¢þ
>WENV171002302
NFZJ01009166
[NFZJ] gut metagenome; feces
3625
3549
-
Arg
TCT
[ENA]
¢þ
>WENV171002285
NFZJ01007550
[NFZJ] gut metagenome; feces
3675
3603
-
Met
CAT
[ENA]
¢þ
>WENV171002327
NFZJ01013652
[NFZJ] gut metagenome; feces
3687
3759
+
Met
CAT
[ENA]
¢þ
>WENV171002215
NFZJ01002288
[NFZJ] gut metagenome; feces
3706
3780
+
Cys
GCA
[ENA]
¢þ
>WENV171002187
NFZJ01000004
[NFZJ] gut metagenome; feces
3795
3713
-
Leu
TAG
[ENA]
¢þ
>WENV171002301
NFZJ01009166
[NFZJ] gut metagenome; feces
3816
3740
-
Arg
CCT
[ENA]
¢þ
>WENV171002223
NFZJ01002865
[NFZJ] gut metagenome; feces
4762
4688
-
Ala
GGC
[ENA]
¢þ
>WENV171002188
NFZJ01000127
[NFZJ] gut metagenome; feces
5302
5376
+
Met
CAT
[ENA]
¢þ
>WENV171002224
NFZJ01003030
[NFZJ] gut metagenome; feces
9045
9122
+
Gln
TTG
[ENA]
¢þ
>WENV171002283
NFZJ01007549
[NFZJ] gut metagenome; feces
12604
12529
-
Arg
CCT
[ENA]
¢þ
>WENV171002284
NFZJ01007550
[NFZJ] gut metagenome; feces
22994
23069
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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