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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[NTLX] marine metagenome; viruses from ocean water
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV171003953
NTLX01000036
[NTLX] marine metagenome; viruses from ocean water
1274
1199
-
Met
CAT
[ENA]
¢þ
>WENV171003954
NTLX01000046
[NTLX] marine metagenome; viruses from ocean water
2211
2296
+
Leu
TAA
[ENA]
¢þ
>WENV171003960
NTLX01000085
[NTLX] marine metagenome; viruses from ocean water
5024
5095
+
Cys
GCA
[ENA]
¢þ
>WENV171003955
NTLX01000046
[NTLX] marine metagenome; viruses from ocean water
8531
8605
+
Arg
TCT
[ENA]
¢þ
>WENV171003956
NTLX01000072
[NTLX] marine metagenome; viruses from ocean water
9154
9078
-
Arg
TCT
[ENA]
¢þ
>WENV171003948
NTLX01000032
[NTLX] marine metagenome; viruses from ocean water
11166
11242
+
Met
CAT
[ENA]
¢þ
>WENV171003949
NTLX01000032
[NTLX] marine metagenome; viruses from ocean water
11246
11322
+
Arg
TCT
[ENA]
¢þ
>WENV171003961
NTLX01000085
[NTLX] marine metagenome; viruses from ocean water
11427
11503
+
Ala
TGC
[ENA]
¢þ
>WENV171003962
NTLX01000085
[NTLX] marine metagenome; viruses from ocean water
11507
11581
+
Glu
TTC
[ENA]
¢þ
>WENV171003950
NTLX01000032
[NTLX] marine metagenome; viruses from ocean water
12062
12135
+
Gln
TTG
[ENA]
¢þ
>WENV171003951
NTLX01000032
[NTLX] marine metagenome; viruses from ocean water
12509
12584
+
Lys
TTT
[ENA]
¢þ
>WENV171003959
NTLX01000082
[NTLX] marine metagenome; viruses from ocean water
17034
16959
-
Asn
GTT
[ENA]
¢þ
>WENV171003958
NTLX01000082
[NTLX] marine metagenome; viruses from ocean water
17531
17444
-
Leu
CAA
[ENA]
¢þ
>WENV171003957
NTLX01000082
[NTLX] marine metagenome; viruses from ocean water
17619
17546
-
Gln
TTG
[ENA]
¢þ
>WENV171003952
NTLX01000032
[NTLX] marine metagenome; viruses from ocean water
22800
22885
+
Leu
CAA
[ENA]
¢þ
>WENV171003947
NTLX01000015
[NTLX] marine metagenome; viruses from ocean water
34648
34573
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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