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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OAOK] sediment metagenome; sediment
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180100124
OAOK01000003
[OAOK] sediment metagenome; sediment
213
137
-
fMet
CAT
[ENA]
¢þ
>WENV180100168
OAOK01000186
[OAOK] sediment metagenome; sediment
260
336
+
Ile
GAT
[ENA]
¢þ
>WENV180100169
OAOK01000186
[OAOK] sediment metagenome; sediment
373
448
+
Ala
TGC
[ENA]
¢þ
>WENV180100131
OAOK01000030
[OAOK] sediment metagenome; sediment
860
935
+
Thr
CGT
[ENA]
¢þ
>WENV180100122
OAOK01000001
[OAOK] sediment metagenome; sediment
1081
1157
+
Ile
GAT
[ENA]
¢þ
>WENV180100123
OAOK01000001
[OAOK] sediment metagenome; sediment
1345
1420
+
Ala
TGC
[ENA]
¢þ
>WENV180100165
OAOK01000137
[OAOK] sediment metagenome; sediment
1563
1488
-
Ala
TGC
[ENA]
¢þ
>WENV180100164
OAOK01000137
[OAOK] sediment metagenome; sediment
1673
1597
-
Ile
GAT
[ENA]
¢þ
>WENV180100157
OAOK01000079
[OAOK] sediment metagenome; sediment
5499
5575
+
Pro
GGG
[ENA]
¢þ
>WENV180100160
OAOK01000092
[OAOK] sediment metagenome; sediment
6112
6187
+
Phe
GAA
[ENA]
¢þ
>WENV180100132
OAOK01000030
[OAOK] sediment metagenome; sediment
6249
6335
+
Leu
CAG
[ENA]
¢þ
>WENV180100167
OAOK01000144
[OAOK] sediment metagenome; sediment
6621
6695
+
Val
GAC
[ENA]
¢þ
>WENV180100166
OAOK01000141
[OAOK] sediment metagenome; sediment
7385
7458
+
Gln
CTG
[ENA]
¢þ
>WENV180100151
OAOK01000062
[OAOK] sediment metagenome; sediment
7667
7742
+
Val
TAC
[ENA]
¢þ
>WENV180100162
OAOK01000103
[OAOK] sediment metagenome; sediment
7979
7905
-
Gly
GCC
[ENA]
¢þ
>WENV180100163
OAOK01000108
[OAOK] sediment metagenome; sediment
8548
8624
+
Arg
CCT
[ENA]
¢þ
>WENV180100143
OAOK01000042
[OAOK] sediment metagenome; sediment
9447
9521
+
Thr
GGT
[ENA]
¢þ
>WENV180100156
OAOK01000076
[OAOK] sediment metagenome; sediment
9481
9405
-
Arg
CCG
[ENA]
¢þ
>WENV180100148
OAOK01000052
[OAOK] sediment metagenome; sediment
10940
10864
-
Trp
CCA
[ENA]
¢þ
>WENV180100155
OAOK01000072
[OAOK] sediment metagenome; sediment
11141
11214
+
Gly
TCC
[ENA]
¢þ
>WENV180100158
OAOK01000084
[OAOK] sediment metagenome; sediment
15979
16053
+
Gln
TTG
[ENA]
¢þ
>WENV180100141
OAOK01000035
[OAOK] sediment metagenome; sediment
18362
18286
-
Met
CAT
[ENA]
¢þ
>WENV180100161
OAOK01000097
[OAOK] sediment metagenome; sediment
19041
18952
-
Ser
TGA
[ENA]
¢þ
>WENV180100159
OAOK01000091
[OAOK] sediment metagenome; sediment
19156
19232
+
Arg
TCT
[ENA]
¢þ
>WENV180100150
OAOK01000056
[OAOK] sediment metagenome; sediment
20842
20753
-
Ser
CGA
[ENA]
¢þ
>WENV180100142
OAOK01000038
[OAOK] sediment metagenome; sediment
24344
24269
-
Lys
TTT
[ENA]
¢þ
>WENV180100154
OAOK01000065
[OAOK] sediment metagenome; sediment
25796
25869
+
Gly
CCC
[ENA]
¢þ
>WENV180100153
OAOK01000063
[OAOK] sediment metagenome; sediment
26105
26029
-
Pro
CGG
[ENA]
¢þ
>WENV180100128
OAOK01000028
[OAOK] sediment metagenome; sediment
27705
27630
-
Lys
CTT
[ENA]
¢þ
>WENV180100152
OAOK01000062
[OAOK] sediment metagenome; sediment
28781
28870
+
Ser
GCT
[ENA]
¢þ
>WENV180100145
OAOK01000043
[OAOK] sediment metagenome; sediment
31303
31227
-
Arg
ACG
[ENA]
¢þ
>WENV180100146
OAOK01000047
[OAOK] sediment metagenome; sediment
34265
34339
+
Glu
TTC
[ENA]
¢þ
>WENV180100140
OAOK01000035
[OAOK] sediment metagenome; sediment
34923
34847
-
His
GTG
[ENA]
¢þ
>WENV180100149
OAOK01000053
[OAOK] sediment metagenome; sediment
37584
37509
-
Thr
TGT
[ENA]
¢þ
>WENV180100147
OAOK01000049
[OAOK] sediment metagenome; sediment
40976
41066
+
Ser
GGA
[ENA]
¢þ
>WENV180100144
OAOK01000043
[OAOK] sediment metagenome; sediment
48298
48371
+
Cys
GCA
[ENA]
¢þ
>WENV180100139
OAOK01000035
[OAOK] sediment metagenome; sediment
48361
48287
-
Val
CAC
[ENA]
¢þ
>WENV180100129
OAOK01000029
[OAOK] sediment metagenome; sediment
60673
60749
+
Asp
GTC
[ENA]
¢þ
>WENV180100130
OAOK01000029
[OAOK] sediment metagenome; sediment
60839
60915
+
Asp
GTC
[ENA]
¢þ
>WENV180100136
OAOK01000033
[OAOK] sediment metagenome; sediment
61638
61563
-
Ala
GGC
[ENA]
¢þ
>WENV180100135
OAOK01000033
[OAOK] sediment metagenome; sediment
68434
68520
+
Leu
TAA
[ENA]
¢þ
>WENV180100138
OAOK01000035
[OAOK] sediment metagenome; sediment
72183
72099
-
Leu
TAG
[ENA]
¢þ
>WENV180100137
OAOK01000034
[OAOK] sediment metagenome; sediment
78424
78350
-
Asn
GTT
[ENA]
¢þ
>WENV180100133
OAOK01000030
[OAOK] sediment metagenome; sediment
81395
81480
+
Tyr
GTA
[ENA]
¢þ
>WENV180100125
OAOK01000028
[OAOK] sediment metagenome; sediment
82690
82766
+
Ile2
CAT
[ENA]
¢þ
>WENV180100126
OAOK01000028
[OAOK] sediment metagenome; sediment
82817
82893
+
Pro
TGG
[ENA]
¢þ
>WENV180100134
OAOK01000030
[OAOK] sediment metagenome; sediment
107727
107802
+
Ala
CGC
[ENA]
¢þ
>WENV180100127
OAOK01000028
[OAOK] sediment metagenome; sediment
139365
139291
-
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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