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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OAOL] sediment metagenome; sediment
HIT:
102 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180100198
OAOL01000116
[OAOL] sediment metagenome; sediment
18
93
+
Ile2
CAT
[ENA]
¢þ
>WENV180100271
OAOL01010694
[OAOL] sediment metagenome; sediment
30
103
+
Ala
CGC
[ENA]
¢þ
>WENV180100246
OAOL01004507
[OAOL] sediment metagenome; sediment
30
103
+
Lys
CTT
[ENA]
¢þ
>WENV180100254
OAOL01005094
[OAOL] sediment metagenome; sediment
40
113
+
Thr
GGT
[ENA]
¢þ
>WENV180100267
OAOL01008720
[OAOL] sediment metagenome; sediment
42
128
+
Leu
GAG
[ENA]
¢þ
>WENV180100264
OAOL01008017
[OAOL] sediment metagenome; sediment
67
157
+
Ile
TAT
[ENA]
¢þ
>WENV180100251
OAOL01004752
[OAOL] sediment metagenome; sediment
76
5
-
Trp
CCA
[ENA]
¢þ
>WENV180100255
OAOL01005160
[OAOL] sediment metagenome; sediment
89
5
-
Leu
GAG
[ENA]
¢þ
>WENV180100270
OAOL01010543
[OAOL] sediment metagenome; sediment
123
39
-
Ser
TGA
[ENA]
¢þ
>WENV180100235
OAOL01002372
[OAOL] sediment metagenome; sediment
126
55
-
Ile
GAT
[ENA]
¢þ
>WENV180100250
OAOL01004752
[OAOL] sediment metagenome; sediment
152
78
-
Arg
TCG
[ENA]
¢þ
>WENV180100197
OAOL01000113
[OAOL] sediment metagenome; sediment
162
86
-
Arg
ACG
[ENA]
¢þ
>WENV180100265
OAOL01008017
[OAOL] sediment metagenome; sediment
163
238
+
Leu
GAG
[ENA]
¢þ
>WENV180100269
OAOL01009800
[OAOL] sediment metagenome; sediment
171
242
+
Val
GAC
[ENA]
¢þ
>WENV180100262
OAOL01007473
[OAOL] sediment metagenome; sediment
182
109
-
Phe
GAA
[ENA]
¢þ
>WENV180100259
OAOL01006030
[OAOL] sediment metagenome; sediment
188
115
-
Val
TAC
[ENA]
¢þ
>WENV180100243
OAOL01003816
[OAOL] sediment metagenome; sediment
208
137
-
Gln
TTG
[ENA]
¢þ
>WENV180100248
OAOL01004589
[OAOL] sediment metagenome; sediment
219
294
+
Glu
TTC
[ENA]
¢þ
>WENV180100268
OAOL01008933
[OAOL] sediment metagenome; sediment
224
152
-
Glu
TTC
[ENA]
¢þ
>WENV180100252
OAOL01004954
[OAOL] sediment metagenome; sediment
229
153
-
Leu
CAA
[ENA]
¢þ
>WENV180100234
OAOL01002310
[OAOL] sediment metagenome; sediment
236
162
-
Pro
CGG
[ENA]
¢þ
>WENV180100232
OAOL01002212
[OAOL] sediment metagenome; sediment
237
312
+
Pro
GGG
[ENA]
¢þ
>WENV180100228
OAOL01002068
[OAOL] sediment metagenome; sediment
248
321
+
Gly
GCC
[ENA]
¢þ
>WENV180100240
OAOL01003063
[OAOL] sediment metagenome; sediment
255
340
+
Leu
CAG
[ENA]
¢þ
>WENV180100249
OAOL01004725
[OAOL] sediment metagenome; sediment
271
197
-
Leu
TAA
[ENA]
¢þ
>WENV180100258
OAOL01005755
[OAOL] sediment metagenome; sediment
280
371
+
Ser
GCT
[ENA]
¢þ
>WENV180100196
OAOL01000113
[OAOL] sediment metagenome; sediment
297
221
-
Arg
ACG
[ENA]
¢þ
>WENV180100263
OAOL01008014
[OAOL] sediment metagenome; sediment
298
222
-
fMet
CAT
[ENA]
¢þ
>WENV180100260
OAOL01006931
[OAOL] sediment metagenome; sediment
301
383
+
Leu
TAG
[ENA]
¢þ
>WENV180100257
OAOL01005291
[OAOL] sediment metagenome; sediment
304
376
+
Gly
TCC
[ENA]
¢þ
>WENV180100261
OAOL01007379
[OAOL] sediment metagenome; sediment
326
253
-
Arg
TCT
[ENA]
¢þ
>WENV180100245
OAOL01004386
[OAOL] sediment metagenome; sediment
345
256
-
Ser
CGA
[ENA]
¢þ
>WENV180100229
OAOL01002068
[OAOL] sediment metagenome; sediment
346
417
+
Cys
GCA
[ENA]
¢þ
>WENV180100266
OAOL01008107
[OAOL] sediment metagenome; sediment
350
261
-
Ser
TGA
[ENA]
¢þ
>WENV180100225
OAOL01000762
[OAOL] sediment metagenome; sediment
364
291
-
Met
CAT
[ENA]
¢þ
>WENV180100253
OAOL01005034
[OAOL] sediment metagenome; sediment
383
310
-
Gly
CCC
[ENA]
¢þ
>WENV180100204
OAOL01000186
[OAOL] sediment metagenome; sediment
404
329
-
Lys
TTT
[ENA]
¢þ
>WENV180100230
OAOL01002068
[OAOL] sediment metagenome; sediment
418
492
+
Val
GAC
[ENA]
¢þ
>WENV180100236
OAOL01002378
[OAOL] sediment metagenome; sediment
427
501
+
fMet
CAT
[ENA]
¢þ
>WENV180100231
OAOL01002202
[OAOL] sediment metagenome; sediment
436
363
-
His
GTG
[ENA]
¢þ
>WENV180100239
OAOL01002592
[OAOL] sediment metagenome; sediment
450
376
-
Gln
CTG
[ENA]
¢þ
>WENV180100224
OAOL01000762
[OAOL] sediment metagenome; sediment
482
409
-
Thr
GGT
[ENA]
¢þ
>WENV180100208
OAOL01000291
[OAOL] sediment metagenome; sediment
495
569
+
Val
CAC
[ENA]
¢þ
>WENV180100247
OAOL01004562
[OAOL] sediment metagenome; sediment
516
591
+
Leu
TAG
[ENA]
¢þ
>WENV180100256
OAOL01005247
[OAOL] sediment metagenome; sediment
530
456
-
Ala
GGC
[ENA]
¢þ
>WENV180100216
OAOL01000416
[OAOL] sediment metagenome; sediment
551
467
-
Leu
TAG
[ENA]
¢þ
>WENV180100238
OAOL01002592
[OAOL] sediment metagenome; sediment
582
506
-
Met
CAT
[ENA]
¢þ
>WENV180100233
OAOL01002255
[OAOL] sediment metagenome; sediment
596
670
+
Ile2
CAT
[ENA]
¢þ
>WENV180100242
OAOL01003405
[OAOL] sediment metagenome; sediment
614
685
+
Cys
GCA
[ENA]
¢þ
>WENV180100221
OAOL01000554
[OAOL] sediment metagenome; sediment
624
549
-
Phe
GAA
[ENA]
¢þ
>WENV180100241
OAOL01003171
[OAOL] sediment metagenome; sediment
626
697
+
Asn
GTT
[ENA]
¢þ
>WENV180100244
OAOL01004070
[OAOL] sediment metagenome; sediment
676
603
-
Lys
TTT
[ENA]
¢þ
>WENV180100220
OAOL01000554
[OAOL] sediment metagenome; sediment
772
697
-
Phe
GAA
[ENA]
¢þ
>WENV180100194
OAOL01000087
[OAOL] sediment metagenome; sediment
836
752
-
Leu
CAG
[ENA]
¢þ
>WENV180100226
OAOL01000788
[OAOL] sediment metagenome; sediment
844
917
+
Thr
CGT
[ENA]
¢þ
>WENV180100223
OAOL01000762
[OAOL] sediment metagenome; sediment
906
823
-
Tyr
GTA
[ENA]
¢þ
>WENV180100237
OAOL01002440
[OAOL] sediment metagenome; sediment
920
846
-
Trp
CCA
[ENA]
¢þ
>WENV180100209
OAOL01000314
[OAOL] sediment metagenome; sediment
952
1041
+
Ser
TGA
[ENA]
¢þ
>WENV180100202
OAOL01000139
[OAOL] sediment metagenome; sediment
1052
976
-
Gln
TTG
[ENA]
¢þ
>WENV180100193
OAOL01000087
[OAOL] sediment metagenome; sediment
1129
1045
-
Leu
CAG
[ENA]
¢þ
>WENV180100227
OAOL01001678
[OAOL] sediment metagenome; sediment
1140
1215
+
Arg
CCG
[ENA]
¢þ
>WENV180100215
OAOL01000416
[OAOL] sediment metagenome; sediment
1355
1280
-
Lys
CTT
[ENA]
¢þ
>WENV180100218
OAOL01000478
[OAOL] sediment metagenome; sediment
1384
1309
-
Arg
CCT
[ENA]
¢þ
>WENV180100178
OAOL01000010
[OAOL] sediment metagenome; sediment
1389
1481
+
Ser
GGA
[ENA]
¢þ
>WENV180100189
OAOL01000077
[OAOL] sediment metagenome; sediment
1447
1521
+
Val
TAC
[ENA]
¢þ
>WENV180100214
OAOL01000416
[OAOL] sediment metagenome; sediment
1511
1435
-
His
GTG
[ENA]
¢þ
>WENV180100190
OAOL01000077
[OAOL] sediment metagenome; sediment
1548
1624
+
Asp
GTC
[ENA]
¢þ
>WENV180100191
OAOL01000077
[OAOL] sediment metagenome; sediment
1708
1784
+
Asp
GTC
[ENA]
¢þ
>WENV180100213
OAOL01000416
[OAOL] sediment metagenome; sediment
1762
1686
-
Arg
TCT
[ENA]
¢þ
>WENV180100210
OAOL01000323
[OAOL] sediment metagenome; sediment
1873
1948
+
Ala
TGC
[ENA]
¢þ
>WENV180100212
OAOL01000416
[OAOL] sediment metagenome; sediment
1878
1802
-
Pro
TGG
[ENA]
¢þ
>WENV180100211
OAOL01000323
[OAOL] sediment metagenome; sediment
1978
2054
+
Ile
GAT
[ENA]
¢þ
>WENV180100217
OAOL01000469
[OAOL] sediment metagenome; sediment
2061
2136
+
Ala
CGC
[ENA]
¢þ
>WENV180100222
OAOL01000680
[OAOL] sediment metagenome; sediment
2364
2274
-
Ser
CGA
[ENA]
¢þ
>WENV180100200
OAOL01000128
[OAOL] sediment metagenome; sediment
3043
3135
+
Ser
GCT
[ENA]
¢þ
>WENV180100219
OAOL01000529
[OAOL] sediment metagenome; sediment
3190
3117
-
Cys
GCA
[ENA]
¢þ
>WENV180100205
OAOL01000249
[OAOL] sediment metagenome; sediment
3430
3506
+
Pro
CGG
[ENA]
¢þ
>WENV180100206
OAOL01000249
[OAOL] sediment metagenome; sediment
3647
3723
+
Pro
CGG
[ENA]
¢þ
>WENV180100207
OAOL01000257
[OAOL] sediment metagenome; sediment
3711
3616
-
SeC
TCA
[ENA]
¢þ
>WENV180100203
OAOL01000158
[OAOL] sediment metagenome; sediment
5095
5019
-
Arg
CCG
[ENA]
¢þ
>WENV180100174
OAOL01000001
[OAOL] sediment metagenome; sediment
5684
5609
-
Gly
GCC
[ENA]
¢þ
>WENV180100173
OAOL01000001
[OAOL] sediment metagenome; sediment
8119
8044
-
Gly
GCC
[ENA]
¢þ
>WENV180100183
OAOL01000027
[OAOL] sediment metagenome; sediment
8599
8674
+
Thr
CGT
[ENA]
¢þ
>WENV180100177
OAOL01000007
[OAOL] sediment metagenome; sediment
8737
8652
-
Leu
CAA
[ENA]
¢þ
>WENV180100192
OAOL01000077
[OAOL] sediment metagenome; sediment
8892
8982
+
Ser
CGA
[ENA]
¢þ
>WENV180100184
OAOL01000061
[OAOL] sediment metagenome; sediment
8906
8991
+
Tyr
GTA
[ENA]
¢þ
>WENV180100185
OAOL01000061
[OAOL] sediment metagenome; sediment
9016
9089
+
Gly
TCC
[ENA]
¢þ
>WENV180100186
OAOL01000061
[OAOL] sediment metagenome; sediment
9139
9214
+
Thr
GGT
[ENA]
¢þ
>WENV180100179
OAOL01000011
[OAOL] sediment metagenome; sediment
9340
9267
-
Gly
CCC
[ENA]
¢þ
>WENV180100201
OAOL01000129
[OAOL] sediment metagenome; sediment
9742
9667
-
Thr
TGT
[ENA]
¢þ
>WENV180100195
OAOL01000113
[OAOL] sediment metagenome; sediment
10250
10176
-
Glu
CTC
[ENA]
¢þ
>WENV180100199
OAOL01000120
[OAOL] sediment metagenome; sediment
10463
10387
-
Pro
GGG
[ENA]
¢þ
>WENV180100187
OAOL01000061
[OAOL] sediment metagenome; sediment
10549
10624
+
Trp
CCA
[ENA]
¢þ
>WENV180100176
OAOL01000007
[OAOL] sediment metagenome; sediment
11000
10925
-
Glu
TTC
[ENA]
¢þ
>WENV180100175
OAOL01000007
[OAOL] sediment metagenome; sediment
11125
11050
-
Ala
GGC
[ENA]
¢þ
>WENV180100188
OAOL01000076
[OAOL] sediment metagenome; sediment
11419
11505
+
Leu
TAA
[ENA]
¢þ
>WENV180100181
OAOL01000026
[OAOL] sediment metagenome; sediment
15141
15217
+
fMet
CAT
[ENA]
¢þ
>WENV180100182
OAOL01000026
[OAOL] sediment metagenome; sediment
15300
15376
+
fMet
CAT
[ENA]
¢þ
>WENV180100180
OAOL01000014
[OAOL] sediment metagenome; sediment
22836
22764
-
fMet
CAT
[ENA]
¢þ
>WENV180100172
OAOL01000001
[OAOL] sediment metagenome; sediment
24079
24005
-
Val
GAC
[ENA]
¢þ
>WENV180100171
OAOL01000001
[OAOL] sediment metagenome; sediment
24252
24178
-
Val
GAC
[ENA]
¢þ
>WENV180100170
OAOL01000001
[OAOL] sediment metagenome; sediment
27197
27121
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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