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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OASO] human gut metagenome; faeces
HIT:
147 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180120537
OASO01005959
[OASO] human gut metagenome; faeces
1
71
+
Gly
TCC
[ENA]
¢þ
>WENV180120499
OASO01000682
[OASO] human gut metagenome; faeces
3
78
+
Ala
TGC
[ENA]
¢þ
>WENV180120438
OASO01000027
[OASO] human gut metagenome; faeces
55
128
+
Glu
TTC
[ENA]
¢þ
>WENV180120449
OASO01000033
[OASO] human gut metagenome; faeces
59
148
+
Ser
TGA
[ENA]
¢þ
>WENV180120524
OASO01002796
[OASO] human gut metagenome; faeces
67
138
+
Gln
TTG
[ENA]
¢þ
>WENV180120539
OASO01006067
[OASO] human gut metagenome; faeces
74
1
-
His
GTG
[ENA]
¢þ
>WENV180120461
OASO01000036
[OASO] human gut metagenome; faeces
74
164
+
Ser
GCT
[ENA]
¢þ
>WENV180120533
OASO01004451
[OASO] human gut metagenome; faeces
75
150
+
Ile2
CAT
[ENA]
¢þ
>WENV180120498
OASO01000365
[OASO] human gut metagenome; faeces
77
5
-
Thr
TGT
[ENA]
¢þ
>WENV180120534
OASO01005694
[OASO] human gut metagenome; faeces
81
-1
-
Tyr
GTA
[ENA]
¢þ
>WENV180120500
OASO01000682
[OASO] human gut metagenome; faeces
103
177
+
Met
CAT
[ENA]
¢þ
>WENV180120538
OASO01005959
[OASO] human gut metagenome; faeces
103
178
+
Ile
GAT
[ENA]
¢þ
>WENV180120528
OASO01003049
[OASO] human gut metagenome; faeces
135
62
-
Arg
ACG
[ENA]
¢þ
>WENV180120439
OASO01000027
[OASO] human gut metagenome; faeces
135
210
+
Val
TAC
[ENA]
¢þ
>WENV180120536
OASO01005890
[OASO] human gut metagenome; faeces
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180120523
OASO01002133
[OASO] human gut metagenome; faeces
141
67
-
Pro
TGG
[ENA]
¢þ
>WENV180120535
OASO01005888
[OASO] human gut metagenome; faeces
143
70
-
Pro
TGG
[ENA]
¢þ
>WENV180120525
OASO01002796
[OASO] human gut metagenome; faeces
146
219
+
Cys
GCA
[ENA]
¢þ
>WENV180120531
OASO01003632
[OASO] human gut metagenome; faeces
148
73
-
Ile2
CAT
[ENA]
¢þ
>WENV180120450
OASO01000033
[OASO] human gut metagenome; faeces
158
231
+
fMet
CAT
[ENA]
¢þ
>WENV180120532
OASO01004263
[OASO] human gut metagenome; faeces
165
78
-
Ser
CGA
[ENA]
¢þ
>WENV180120529
OASO01003094
[OASO] human gut metagenome; faeces
167
94
-
Arg
CCG
[ENA]
¢þ
>WENV180120497
OASO01000365
[OASO] human gut metagenome; faeces
172
89
-
Leu
TAG
[ENA]
¢þ
>WENV180120501
OASO01000682
[OASO] human gut metagenome; faeces
204
277
+
Ile2
CAT
[ENA]
¢þ
>WENV180120440
OASO01000027
[OASO] human gut metagenome; faeces
227
310
+
Tyr
GTA
[ENA]
¢þ
>WENV180120451
OASO01000033
[OASO] human gut metagenome; faeces
234
308
+
Phe
GAA
[ENA]
¢þ
>WENV180120527
OASO01003049
[OASO] human gut metagenome; faeces
235
150
-
Leu
TAA
[ENA]
¢þ
>WENV180120530
OASO01003632
[OASO] human gut metagenome; faeces
238
163
-
Met
CAT
[ENA]
¢þ
>WENV180120522
OASO01002133
[OASO] human gut metagenome; faeces
244
168
-
Arg
ACG
[ENA]
¢þ
>WENV180120496
OASO01000365
[OASO] human gut metagenome; faeces
249
177
-
Lys
TTT
[ENA]
¢þ
>WENV180120502
OASO01000682
[OASO] human gut metagenome; faeces
286
377
+
Ser
TGA
[ENA]
¢þ
>WENV180120526
OASO01003049
[OASO] human gut metagenome; faeces
313
242
-
Gly
GCC
[ENA]
¢þ
>WENV180120441
OASO01000027
[OASO] human gut metagenome; faeces
315
389
+
Gln
TTG
[ENA]
¢þ
>WENV180120452
OASO01000033
[OASO] human gut metagenome; faeces
321
403
+
Tyr
GTA
[ENA]
¢þ
>WENV180120495
OASO01000365
[OASO] human gut metagenome; faeces
341
269
-
Asp
GTC
[ENA]
¢þ
>WENV180120521
OASO01002133
[OASO] human gut metagenome; faeces
345
257
-
Leu
TAA
[ENA]
¢þ
>WENV180120518
OASO01001752
[OASO] human gut metagenome; faeces
358
441
+
Leu
CAA
[ENA]
¢þ
>WENV180120516
OASO01001399
[OASO] human gut metagenome; faeces
366
441
+
Arg
TCT
[ENA]
¢þ
>WENV180120503
OASO01000682
[OASO] human gut metagenome; faeces
384
459
+
Asp
GTC
[ENA]
¢þ
>WENV180120442
OASO01000027
[OASO] human gut metagenome; faeces
393
466
+
Lys
TTT
[ENA]
¢þ
>WENV180120453
OASO01000033
[OASO] human gut metagenome; faeces
407
479
+
Trp
CCA
[ENA]
¢þ
>WENV180120494
OASO01000365
[OASO] human gut metagenome; faeces
416
344
-
Val
TAC
[ENA]
¢þ
>WENV180120520
OASO01002133
[OASO] human gut metagenome; faeces
431
357
-
Gly
GCC
[ENA]
¢þ
>WENV180120454
OASO01000033
[OASO] human gut metagenome; faeces
489
563
+
His
GTG
[ENA]
¢þ
>WENV180120504
OASO01000682
[OASO] human gut metagenome; faeces
497
589
+
Ser
TGA
[ENA]
¢þ
>WENV180120519
OASO01002133
[OASO] human gut metagenome; faeces
522
450
-
Lys
TTT
[ENA]
¢þ
>WENV180120517
OASO01001651
[OASO] human gut metagenome; faeces
568
494
-
Val
TAC
[ENA]
¢þ
>WENV180120455
OASO01000033
[OASO] human gut metagenome; faeces
570
643
+
Gln
TTG
[ENA]
¢þ
>WENV180120505
OASO01000682
[OASO] human gut metagenome; faeces
601
674
+
fMet
CAT
[ENA]
¢þ
>WENV180120456
OASO01000033
[OASO] human gut metagenome; faeces
651
736
+
Leu
CAA
[ENA]
¢þ
>WENV180120506
OASO01000682
[OASO] human gut metagenome; faeces
689
764
+
Asp
GTC
[ENA]
¢þ
>WENV180120515
OASO01001120
[OASO] human gut metagenome; faeces
732
658
-
Ala
TGC
[ENA]
¢þ
>WENV180120489
OASO01000090
[OASO] human gut metagenome; faeces
760
834
+
Leu
CAA
[ENA]
¢þ
>WENV180120507
OASO01000682
[OASO] human gut metagenome; faeces
774
848
+
Phe
GAA
[ENA]
¢þ
>WENV180120514
OASO01000723
[OASO] human gut metagenome; faeces
775
698
-
Leu
TAA
[ENA]
¢þ
>WENV180120508
OASO01000682
[OASO] human gut metagenome; faeces
856
931
+
Thr
TGT
[ENA]
¢þ
>WENV180120509
OASO01000682
[OASO] human gut metagenome; faeces
939
1022
+
Tyr
GTA
[ENA]
¢þ
>WENV180120510
OASO01000682
[OASO] human gut metagenome; faeces
1031
1104
+
Trp
CCA
[ENA]
¢þ
>WENV180120511
OASO01000682
[OASO] human gut metagenome; faeces
1107
1180
+
His
GTG
[ENA]
¢þ
>WENV180120512
OASO01000682
[OASO] human gut metagenome; faeces
1191
1262
+
Gln
TTG
[ENA]
¢þ
>WENV180120513
OASO01000682
[OASO] human gut metagenome; faeces
1268
1341
+
Cys
GCA
[ENA]
¢þ
>WENV180120493
OASO01000296
[OASO] human gut metagenome; faeces
1613
1541
-
Arg
CCG
[ENA]
¢þ
>WENV180120487
OASO01000062
[OASO] human gut metagenome; faeces
3331
3258
-
Arg
CCT
[ENA]
¢þ
>WENV180120484
OASO01000059
[OASO] human gut metagenome; faeces
4848
4758
-
Ser
GGA
[ENA]
¢þ
>WENV180120483
OASO01000059
[OASO] human gut metagenome; faeces
4973
4900
-
Glu
TTC
[ENA]
¢þ
>WENV180120482
OASO01000059
[OASO] human gut metagenome; faeces
5048
4974
-
Asn
GTT
[ENA]
¢þ
>WENV180120481
OASO01000059
[OASO] human gut metagenome; faeces
5131
5058
-
Gly
TCC
[ENA]
¢þ
>WENV180120480
OASO01000059
[OASO] human gut metagenome; faeces
5224
5149
-
His
GTG
[ENA]
¢þ
>WENV180120479
OASO01000059
[OASO] human gut metagenome; faeces
5311
5237
-
Phe
GAA
[ENA]
¢þ
>WENV180120478
OASO01000059
[OASO] human gut metagenome; faeces
5396
5321
-
Asp
GTC
[ENA]
¢þ
>WENV180120477
OASO01000059
[OASO] human gut metagenome; faeces
5484
5411
-
fMet
CAT
[ENA]
¢þ
>WENV180120492
OASO01000188
[OASO] human gut metagenome; faeces
5878
5807
-
Glu
TTC
[ENA]
¢þ
>WENV180120491
OASO01000126
[OASO] human gut metagenome; faeces
6119
6211
+
Ser
TGA
[ENA]
¢þ
>WENV180120427
OASO01000018
[OASO] human gut metagenome; faeces
7730
7815
+
Ser
CGA
[ENA]
¢þ
>WENV180120457
OASO01000033
[OASO] human gut metagenome; faeces
8188
8118
-
Cys
GCA
[ENA]
¢þ
>WENV180120474
OASO01000051
[OASO] human gut metagenome; faeces
10667
10594
-
Gly
CCC
[ENA]
¢þ
>WENV180120490
OASO01000090
[OASO] human gut metagenome; faeces
10900
10826
-
Pro
TGG
[ENA]
¢þ
>WENV180120436
OASO01000024
[OASO] human gut metagenome; faeces
13029
12956
-
Thr
GGT
[ENA]
¢þ
>WENV180120458
OASO01000034
[OASO] human gut metagenome; faeces
14296
14369
+
Thr
CGT
[ENA]
¢þ
>WENV180120459
OASO01000034
[OASO] human gut metagenome; faeces
14463
14544
+
Leu
TAG
[ENA]
¢þ
>WENV180120488
OASO01000082
[OASO] human gut metagenome; faeces
14708
14636
-
Thr
CGT
[ENA]
¢þ
>WENV180120399
OASO01000003
[OASO] human gut metagenome; faeces
14846
14919
+
Asn
GTT
[ENA]
¢þ
>WENV180120462
OASO01000039
[OASO] human gut metagenome; faeces
17610
17685
+
Trp
CCA
[ENA]
¢þ
>WENV180120448
OASO01000030
[OASO] human gut metagenome; faeces
17984
17911
-
Glu
TTC
[ENA]
¢þ
>WENV180120468
OASO01000040
[OASO] human gut metagenome; faeces
18510
18435
-
Arg
TCT
[ENA]
¢þ
>WENV180120466
OASO01000040
[OASO] human gut metagenome; faeces
18695
18768
+
Glu
TTC
[ENA]
¢þ
>WENV180120467
OASO01000040
[OASO] human gut metagenome; faeces
18790
18863
+
Asn
GTT
[ENA]
¢þ
>WENV180120445
OASO01000030
[OASO] human gut metagenome; faeces
19235
19309
+
Asp
GTC
[ENA]
¢þ
>WENV180120473
OASO01000051
[OASO] human gut metagenome; faeces
20831
20914
+
Leu
CAG
[ENA]
¢þ
>WENV180120485
OASO01000060
[OASO] human gut metagenome; faeces
24804
24878
+
Glu
TTC
[ENA]
¢þ
>WENV180120486
OASO01000060
[OASO] human gut metagenome; faeces
24884
24956
+
Asp
GTC
[ENA]
¢þ
>WENV180120476
OASO01000057
[OASO] human gut metagenome; faeces
29004
28918
-
Ser
GGA
[ENA]
¢þ
>WENV180120471
OASO01000046
[OASO] human gut metagenome; faeces
29109
29181
+
Lys
CTT
[ENA]
¢þ
>WENV180120435
OASO01000021
[OASO] human gut metagenome; faeces
30706
30633
-
Glu
TTC
[ENA]
¢þ
>WENV180120434
OASO01000021
[OASO] human gut metagenome; faeces
30807
30734
-
Gln
TTG
[ENA]
¢þ
>WENV180120475
OASO01000056
[OASO] human gut metagenome; faeces
31423
31497
+
Arg
TCT
[ENA]
¢þ
>WENV180120428
OASO01000018
[OASO] human gut metagenome; faeces
33765
33851
+
Ser
TGA
[ENA]
¢þ
>WENV180120417
OASO01000015
[OASO] human gut metagenome; faeces
33783
33856
+
Glu
CTC
[ENA]
¢þ
>WENV180120418
OASO01000015
[OASO] human gut metagenome; faeces
33895
33969
+
Gln
CTG
[ENA]
¢þ
>WENV180120437
OASO01000026
[OASO] human gut metagenome; faeces
34382
34301
-
Leu
TAA
[ENA]
¢þ
>WENV180120423
OASO01000015
[OASO] human gut metagenome; faeces
34911
34826
-
Ser
GGA
[ENA]
¢þ
>WENV180120469
OASO01000043
[OASO] human gut metagenome; faeces
39907
39999
+
Ser
TGA
[ENA]
¢þ
>WENV180120470
OASO01000044
[OASO] human gut metagenome; faeces
41415
41344
-
Arg
CCG
[ENA]
¢þ
>WENV180120463
OASO01000039
[OASO] human gut metagenome; faeces
42251
42324
+
Gly
GCC
[ENA]
¢þ
>WENV180120464
OASO01000039
[OASO] human gut metagenome; faeces
42370
42442
+
Val
GAC
[ENA]
¢þ
>WENV180120465
OASO01000039
[OASO] human gut metagenome; faeces
42490
42564
+
Val
CAC
[ENA]
¢þ
>WENV180120472
OASO01000047
[OASO] human gut metagenome; faeces
42776
42687
-
Ser
GCT
[ENA]
¢þ
>WENV180120426
OASO01000017
[OASO] human gut metagenome; faeces
46419
46345
-
Val
TAC
[ENA]
¢þ
>WENV180120431
OASO01000020
[OASO] human gut metagenome; faeces
50473
50555
+
Tyr
GTA
[ENA]
¢þ
>WENV180120432
OASO01000020
[OASO] human gut metagenome; faeces
50632
50706
+
Met
CAT
[ENA]
¢þ
>WENV180120446
OASO01000030
[OASO] human gut metagenome; faeces
53724
53800
+
Asp
GTC
[ENA]
¢þ
>WENV180120429
OASO01000018
[OASO] human gut metagenome; faeces
53853
53778
-
Pro
CGG
[ENA]
¢þ
>WENV180120433
OASO01000020
[OASO] human gut metagenome; faeces
57827
57914
+
Ser
GCT
[ENA]
¢þ
>WENV180120419
OASO01000015
[OASO] human gut metagenome; faeces
59056
59129
+
Lys
TTT
[ENA]
¢þ
>WENV180120447
OASO01000030
[OASO] human gut metagenome; faeces
59504
59578
+
Ile2
CAT
[ENA]
¢þ
>WENV180120460
OASO01000034
[OASO] human gut metagenome; faeces
64036
63963
-
Gly
TCC
[ENA]
¢þ
>WENV180120411
OASO01000011
[OASO] human gut metagenome; faeces
66918
66992
+
Ile
GAT
[ENA]
¢þ
>WENV180120412
OASO01000011
[OASO] human gut metagenome; faeces
67035
67108
+
Ala
TGC
[ENA]
¢þ
>WENV180120393
OASO01000001
[OASO] human gut metagenome; faeces
69902
69990
+
Leu
GAG
[ENA]
¢þ
>WENV180120400
OASO01000003
[OASO] human gut metagenome; faeces
70043
70116
+
Asn
GTT
[ENA]
¢þ
>WENV180120443
OASO01000027
[OASO] human gut metagenome; faeces
82543
82629
+
Leu
GAG
[ENA]
¢þ
>WENV180120444
OASO01000027
[OASO] human gut metagenome; faeces
82652
82725
+
Gly
TCC
[ENA]
¢þ
>WENV180120420
OASO01000015
[OASO] human gut metagenome; faeces
82997
83071
+
Lys
CTT
[ENA]
¢þ
>WENV180120430
OASO01000019
[OASO] human gut metagenome; faeces
88063
87978
-
Leu
AAG
[ENA]
¢þ
>WENV180120414
OASO01000012
[OASO] human gut metagenome; faeces
106633
106713
+
Tyr
GTA
[ENA]
¢þ
>WENV180120415
OASO01000012
[OASO] human gut metagenome; faeces
106781
106854
+
Gln
TTG
[ENA]
¢þ
>WENV180120413
OASO01000011
[OASO] human gut metagenome; faeces
108091
108017
-
Thr
TGT
[ENA]
¢þ
>WENV180120416
OASO01000012
[OASO] human gut metagenome; faeces
108245
108316
+
Arg
CCG
[ENA]
¢þ
>WENV180120424
OASO01000016
[OASO] human gut metagenome; faeces
122061
121990
-
Arg
CCT
[ENA]
¢þ
>WENV180120422
OASO01000015
[OASO] human gut metagenome; faeces
127561
127485
-
fMet
CAT
[ENA]
¢þ
>WENV180120425
OASO01000017
[OASO] human gut metagenome; faeces
127746
127821
+
His
GTG
[ENA]
¢þ
>WENV180120406
OASO01000003
[OASO] human gut metagenome; faeces
134423
134349
-
Pro
GGG
[ENA]
¢þ
>WENV180120421
OASO01000015
[OASO] human gut metagenome; faeces
142395
142470
+
Arg
CCG
[ENA]
¢þ
>WENV180120405
OASO01000003
[OASO] human gut metagenome; faeces
151324
151249
-
Gly
GCC
[ENA]
¢þ
>WENV180120404
OASO01000003
[OASO] human gut metagenome; faeces
151428
151355
-
Val
CAC
[ENA]
¢þ
>WENV180120403
OASO01000003
[OASO] human gut metagenome; faeces
151548
151476
-
Val
GAC
[ENA]
¢þ
>WENV180120402
OASO01000003
[OASO] human gut metagenome; faeces
151659
151588
-
Cys
GCA
[ENA]
¢þ
>WENV180120401
OASO01000003
[OASO] human gut metagenome; faeces
151760
151687
-
Gly
GCC
[ENA]
¢þ
>WENV180120398
OASO01000001
[OASO] human gut metagenome; faeces
185258
185184
-
Arg
ACG
[ENA]
¢þ
>WENV180120397
OASO01000001
[OASO] human gut metagenome; faeces
185361
185287
-
Arg
ACG
[ENA]
¢þ
>WENV180120409
OASO01000008
[OASO] human gut metagenome; faeces
186501
186585
+
Leu
CAG
[ENA]
¢þ
>WENV180120407
OASO01000005
[OASO] human gut metagenome; faeces
188925
188999
+
Arg
TCT
[ENA]
¢þ
>WENV180120410
OASO01000008
[OASO] human gut metagenome; faeces
191780
191707
-
Asn
GTT
[ENA]
¢þ
>WENV180120396
OASO01000001
[OASO] human gut metagenome; faeces
205142
205069
-
Ala
GGC
[ENA]
¢þ
>WENV180120395
OASO01000001
[OASO] human gut metagenome; faeces
205301
205228
-
Ala
GGC
[ENA]
¢þ
>WENV180120408
OASO01000006
[OASO] human gut metagenome; faeces
205310
205237
-
Asn
GTT
[ENA]
¢þ
>WENV180120394
OASO01000001
[OASO] human gut metagenome; faeces
223498
223570
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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