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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OASP] human gut metagenome; faeces
HIT:
160 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180120698
OASP01009961
[OASP] human gut metagenome; faeces
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV180120660
OASP01000085
[OASP] human gut metagenome; faeces
30
106
+
Asp
GTC
[ENA]
¢þ
>WENV180120691
OASP01004761
[OASP] human gut metagenome; faeces
47
120
+
Gly
TCC
[ENA]
¢þ
>WENV180120674
OASP01002449
[OASP] human gut metagenome; faeces
58
146
+
Ser
TGA
[ENA]
¢þ
>WENV180120685
OASP01004020
[OASP] human gut metagenome; faeces
75
148
+
Glu
CTC
[ENA]
¢þ
>WENV180120699
OASP01009968
[OASP] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180120678
OASP01002498
[OASP] human gut metagenome; faeces
77
6
-
Arg
CCG
[ENA]
¢þ
>WENV180120689
OASP01004048
[OASP] human gut metagenome; faeces
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV180120697
OASP01009887
[OASP] human gut metagenome; faeces
82
6
-
Asp
GTC
[ENA]
¢þ
>WENV180120669
OASP01001160
[OASP] human gut metagenome; faeces
83
9
-
Val
TAC
[ENA]
¢þ
>WENV180120672
OASP01001334
[OASP] human gut metagenome; faeces
87
12
-
fMet
CAT
[ENA]
¢þ
>WENV180120659
OASP01000080
[OASP] human gut metagenome; faeces
99
12
-
Ser
GGA
[ENA]
¢þ
>WENV180120695
OASP01009669
[OASP] human gut metagenome; faeces
102
28
-
Pro
CGG
[ENA]
¢þ
>WENV180120673
OASP01001739
[OASP] human gut metagenome; faeces
104
195
+
Ser
GGA
[ENA]
¢þ
>WENV180120692
OASP01004900
[OASP] human gut metagenome; faeces
117
202
+
Leu
CAG
[ENA]
¢þ
>WENV180120694
OASP01008235
[OASP] human gut metagenome; faeces
137
52
-
Leu
TAA
[ENA]
¢þ
>WENV180120696
OASP01009884
[OASP] human gut metagenome; faeces
137
63
-
Cys
GCA
[ENA]
¢þ
>WENV180120690
OASP01004233
[OASP] human gut metagenome; faeces
148
223
+
Ala
TGC
[ENA]
¢þ
>WENV180120684
OASP01003956
[OASP] human gut metagenome; faeces
150
58
-
Ser
TGA
[ENA]
¢þ
>WENV180120675
OASP01002449
[OASP] human gut metagenome; faeces
151
226
+
Phe
GAA
[ENA]
¢þ
>WENV180120688
OASP01004048
[OASP] human gut metagenome; faeces
171
96
-
Gln
TTG
[ENA]
¢þ
>WENV180120686
OASP01004020
[OASP] human gut metagenome; faeces
187
259
+
Gln
CTG
[ENA]
¢þ
>WENV180120693
OASP01005231
[OASP] human gut metagenome; faeces
188
115
-
Lys
TTT
[ENA]
¢þ
>WENV180120681
OASP01003030
[OASP] human gut metagenome; faeces
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180120671
OASP01001334
[OASP] human gut metagenome; faeces
195
106
-
Leu
TAA
[ENA]
¢þ
>WENV180120682
OASP01003931
[OASP] human gut metagenome; faeces
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180120676
OASP01002449
[OASP] human gut metagenome; faeces
235
311
+
Met
CAT
[ENA]
¢þ
>WENV180120687
OASP01004048
[OASP] human gut metagenome; faeces
257
181
-
Arg
TCT
[ENA]
¢þ
>WENV180120683
OASP01003956
[OASP] human gut metagenome; faeces
263
188
-
Asp
GTC
[ENA]
¢þ
>WENV180120670
OASP01001334
[OASP] human gut metagenome; faeces
274
200
-
Asn
GTT
[ENA]
¢þ
>WENV180120680
OASP01003030
[OASP] human gut metagenome; faeces
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180120677
OASP01002449
[OASP] human gut metagenome; faeces
322
398
+
Ile2
CAT
[ENA]
¢þ
>WENV180120679
OASP01002539
[OASP] human gut metagenome; faeces
365
438
+
Ile2
CAT
[ENA]
¢þ
>WENV180120668
OASP01001033
[OASP] human gut metagenome; faeces
394
468
+
Ile2
CAT
[ENA]
¢þ
>WENV180120666
OASP01000095
[OASP] human gut metagenome; faeces
455
380
-
Thr
GGT
[ENA]
¢þ
>WENV180120665
OASP01000095
[OASP] human gut metagenome; faeces
536
462
-
Gly
TCC
[ENA]
¢þ
>WENV180120667
OASP01000150
[OASP] human gut metagenome; faeces
609
686
+
Leu
TAA
[ENA]
¢þ
>WENV180120664
OASP01000095
[OASP] human gut metagenome; faeces
737
653
-
Tyr
GTA
[ENA]
¢þ
>WENV180120663
OASP01000095
[OASP] human gut metagenome; faeces
821
746
-
Thr
TGT
[ENA]
¢þ
>WENV180120636
OASP01000041
[OASP] human gut metagenome; faeces
1717
1642
-
Gly
GCC
[ENA]
¢þ
>WENV180120635
OASP01000041
[OASP] human gut metagenome; faeces
1828
1753
-
Gly
GCC
[ENA]
¢þ
>WENV180120634
OASP01000041
[OASP] human gut metagenome; faeces
2061
1986
-
Gly
GCC
[ENA]
¢þ
>WENV180120661
OASP01000094
[OASP] human gut metagenome; faeces
2198
2274
+
Ile
GAT
[ENA]
¢þ
>WENV180120662
OASP01000094
[OASP] human gut metagenome; faeces
2303
2377
+
Ala
TGC
[ENA]
¢þ
>WENV180120617
OASP01000032
[OASP] human gut metagenome; faeces
2754
2829
+
Val
TAC
[ENA]
¢þ
>WENV180120618
OASP01000032
[OASP] human gut metagenome; faeces
2876
2951
+
Val
TAC
[ENA]
¢þ
>WENV180120619
OASP01000032
[OASP] human gut metagenome; faeces
2998
3073
+
Val
TAC
[ENA]
¢þ
>WENV180120620
OASP01000032
[OASP] human gut metagenome; faeces
3078
3153
+
Lys
TTT
[ENA]
¢þ
>WENV180120567
OASP01000004
[OASP] human gut metagenome; faeces
4158
4083
-
Pro
TGG
[ENA]
¢þ
>WENV180120566
OASP01000004
[OASP] human gut metagenome; faeces
4270
4195
-
Pro
TGG
[ENA]
¢þ
>WENV180120632
OASP01000040
[OASP] human gut metagenome; faeces
6325
6398
+
Phe
GAA
[ENA]
¢þ
>WENV180120658
OASP01000075
[OASP] human gut metagenome; faeces
7396
7320
-
Arg
TCT
[ENA]
¢þ
>WENV180120656
OASP01000059
[OASP] human gut metagenome; faeces
8675
8601
-
Gln
CTG
[ENA]
¢þ
>WENV180120655
OASP01000059
[OASP] human gut metagenome; faeces
8787
8713
-
Gln
CTG
[ENA]
¢þ
>WENV180120654
OASP01000059
[OASP] human gut metagenome; faeces
8912
8836
-
Met
CAT
[ENA]
¢þ
>WENV180120578
OASP01000009
[OASP] human gut metagenome; faeces
8926
8843
-
Tyr
GTA
[ENA]
¢þ
>WENV180120653
OASP01000059
[OASP] human gut metagenome; faeces
9002
8928
-
Gln
TTG
[ENA]
¢þ
>WENV180120652
OASP01000059
[OASP] human gut metagenome; faeces
9111
9037
-
Gln
TTG
[ENA]
¢þ
>WENV180120651
OASP01000059
[OASP] human gut metagenome; faeces
9219
9135
-
Leu
TAG
[ENA]
¢þ
>WENV180120650
OASP01000059
[OASP] human gut metagenome; faeces
9304
9228
-
Met
CAT
[ENA]
¢þ
>WENV180120598
OASP01000019
[OASP] human gut metagenome; faeces
12249
12178
-
Gln
TTG
[ENA]
¢þ
>WENV180120568
OASP01000005
[OASP] human gut metagenome; faeces
14034
14109
+
Gly
GCC
[ENA]
¢þ
>WENV180120569
OASP01000005
[OASP] human gut metagenome; faeces
14164
14237
+
Cys
GCA
[ENA]
¢þ
>WENV180120570
OASP01000005
[OASP] human gut metagenome; faeces
14250
14336
+
Leu
TAA
[ENA]
¢þ
>WENV180120648
OASP01000050
[OASP] human gut metagenome; faeces
14702
14629
-
fMet
CAT
[ENA]
¢þ
>WENV180120607
OASP01000025
[OASP] human gut metagenome; faeces
15141
15065
-
Pro
GGG
[ENA]
¢þ
>WENV180120637
OASP01000043
[OASP] human gut metagenome; faeces
21948
22040
+
Ser
GCT
[ENA]
¢þ
>WENV180120638
OASP01000043
[OASP] human gut metagenome; faeces
22044
22120
+
Arg
ACG
[ENA]
¢þ
>WENV180120639
OASP01000043
[OASP] human gut metagenome; faeces
22184
22260
+
Arg
ACG
[ENA]
¢þ
>WENV180120609
OASP01000027
[OASP] human gut metagenome; faeces
22700
22624
-
fMet
CAT
[ENA]
¢þ
>WENV180120608
OASP01000027
[OASP] human gut metagenome; faeces
26561
26475
-
Leu
GAG
[ENA]
¢þ
>WENV180120599
OASP01000021
[OASP] human gut metagenome; faeces
27886
27960
+
Asn
GTT
[ENA]
¢þ
>WENV180120600
OASP01000021
[OASP] human gut metagenome; faeces
27989
28063
+
Asn
GTT
[ENA]
¢þ
>WENV180120633
OASP01000041
[OASP] human gut metagenome; faeces
30925
31000
+
Phe
GAA
[ENA]
¢þ
>WENV180120657
OASP01000060
[OASP] human gut metagenome; faeces
33874
33799
-
Phe
GAA
[ENA]
¢þ
>WENV180120589
OASP01000014
[OASP] human gut metagenome; faeces
35050
34975
-
Pro
GGG
[ENA]
¢þ
>WENV180120649
OASP01000051
[OASP] human gut metagenome; faeces
37076
36992
-
Leu
CAA
[ENA]
¢þ
>WENV180120610
OASP01000029
[OASP] human gut metagenome; faeces
42153
42237
+
Tyr
GTA
[ENA]
¢þ
>WENV180120611
OASP01000029
[OASP] human gut metagenome; faeces
42272
42356
+
Tyr
GTA
[ENA]
¢þ
>WENV180120616
OASP01000030
[OASP] human gut metagenome; faeces
46722
46647
-
Asn
GTT
[ENA]
¢þ
>WENV180120615
OASP01000030
[OASP] human gut metagenome; faeces
49131
49056
-
Asn
GTT
[ENA]
¢þ
>WENV180120641
OASP01000047
[OASP] human gut metagenome; faeces
49977
50052
+
Lys
TTT
[ENA]
¢þ
>WENV180120642
OASP01000047
[OASP] human gut metagenome; faeces
50188
50263
+
Val
TAC
[ENA]
¢þ
>WENV180120643
OASP01000047
[OASP] human gut metagenome; faeces
50268
50343
+
Lys
TTT
[ENA]
¢þ
>WENV180120644
OASP01000047
[OASP] human gut metagenome; faeces
50395
50470
+
Val
TAC
[ENA]
¢þ
>WENV180120645
OASP01000047
[OASP] human gut metagenome; faeces
50475
50550
+
Lys
TTT
[ENA]
¢þ
>WENV180120646
OASP01000047
[OASP] human gut metagenome; faeces
50697
50772
+
Lys
TTT
[ENA]
¢þ
>WENV180120647
OASP01000047
[OASP] human gut metagenome; faeces
50806
50881
+
Lys
TTT
[ENA]
¢þ
>WENV180120612
OASP01000030
[OASP] human gut metagenome; faeces
50880
50955
+
Asn
GTT
[ENA]
¢þ
>WENV180120602
OASP01000022
[OASP] human gut metagenome; faeces
53206
53282
+
Pro
CGG
[ENA]
¢þ
>WENV180120640
OASP01000043
[OASP] human gut metagenome; faeces
54478
54553
+
Ile2
CAT
[ENA]
¢þ
>WENV180120606
OASP01000024
[OASP] human gut metagenome; faeces
55173
55246
+
Trp
CCA
[ENA]
¢þ
>WENV180120630
OASP01000035
[OASP] human gut metagenome; faeces
56079
56003
-
Pro
TGG
[ENA]
¢þ
>WENV180120629
OASP01000035
[OASP] human gut metagenome; faeces
56208
56122
-
Leu
CAG
[ENA]
¢þ
>WENV180120628
OASP01000035
[OASP] human gut metagenome; faeces
56304
56229
-
His
GTG
[ENA]
¢þ
>WENV180120627
OASP01000035
[OASP] human gut metagenome; faeces
56439
56363
-
Arg
CCG
[ENA]
¢þ
>WENV180120573
OASP01000006
[OASP] human gut metagenome; faeces
60310
60222
-
Ser
GGA
[ENA]
¢þ
>WENV180120624
OASP01000033
[OASP] human gut metagenome; faeces
65046
64973
-
Trp
CCA
[ENA]
¢þ
>WENV180120623
OASP01000033
[OASP] human gut metagenome; faeces
66406
66334
-
Thr
GGT
[ENA]
¢þ
>WENV180120622
OASP01000033
[OASP] human gut metagenome; faeces
66603
66520
-
Tyr
GTA
[ENA]
¢þ
>WENV180120621
OASP01000033
[OASP] human gut metagenome; faeces
66751
66677
-
Thr
TGT
[ENA]
¢þ
>WENV180120631
OASP01000038
[OASP] human gut metagenome; faeces
70397
70471
+
Ile2
CAT
[ENA]
¢þ
>WENV180120614
OASP01000030
[OASP] human gut metagenome; faeces
75934
75859
-
Asn
GTT
[ENA]
¢þ
>WENV180120613
OASP01000030
[OASP] human gut metagenome; faeces
76926
77015
+
Ser
CGA
[ENA]
¢þ
>WENV180120588
OASP01000014
[OASP] human gut metagenome; faeces
79662
79733
+
Gln
CTG
[ENA]
¢þ
>WENV180120595
OASP01000017
[OASP] human gut metagenome; faeces
80405
80480
+
Ile2
CAT
[ENA]
¢þ
>WENV180120603
OASP01000023
[OASP] human gut metagenome; faeces
80463
80538
+
Val
TAC
[ENA]
¢þ
>WENV180120604
OASP01000023
[OASP] human gut metagenome; faeces
80567
80642
+
Val
TAC
[ENA]
¢þ
>WENV180120605
OASP01000023
[OASP] human gut metagenome; faeces
80693
80768
+
Val
TAC
[ENA]
¢þ
>WENV180120579
OASP01000010
[OASP] human gut metagenome; faeces
86845
86919
+
Thr
TGT
[ENA]
¢þ
>WENV180120594
OASP01000016
[OASP] human gut metagenome; faeces
90535
90441
-
SeC
TCA
[ENA]
¢þ
>WENV180120626
OASP01000035
[OASP] human gut metagenome; faeces
91714
91639
-
Trp
CCA
[ENA]
¢þ
>WENV180120625
OASP01000035
[OASP] human gut metagenome; faeces
91799
91723
-
Asp
GTC
[ENA]
¢þ
>WENV180120590
OASP01000015
[OASP] human gut metagenome; faeces
97424
97508
+
Leu
CAA
[ENA]
¢þ
>WENV180120565
OASP01000004
[OASP] human gut metagenome; faeces
99072
98999
-
Gly
CCC
[ENA]
¢þ
>WENV180120583
OASP01000011
[OASP] human gut metagenome; faeces
104651
104727
+
fMet
CAT
[ENA]
¢þ
>WENV180120584
OASP01000011
[OASP] human gut metagenome; faeces
104761
104837
+
fMet
CAT
[ENA]
¢þ
>WENV180120585
OASP01000011
[OASP] human gut metagenome; faeces
104871
104947
+
fMet
CAT
[ENA]
¢þ
>WENV180120550
OASP01000002
[OASP] human gut metagenome; faeces
107272
107198
-
Ala
GGC
[ENA]
¢þ
>WENV180120540
OASP01000001
[OASP] human gut metagenome; faeces
108471
108558
+
Ser
GCT
[ENA]
¢þ
>WENV180120541
OASP01000001
[OASP] human gut metagenome; faeces
108636
108708
+
Glu
CTC
[ENA]
¢þ
>WENV180120596
OASP01000018
[OASP] human gut metagenome; faeces
115717
115791
+
Arg
CCT
[ENA]
¢þ
>WENV180120601
OASP01000021
[OASP] human gut metagenome; faeces
117464
117392
-
Arg
CCT
[ENA]
¢þ
>WENV180120582
OASP01000010
[OASP] human gut metagenome; faeces
122931
122859
-
Cys
GCA
[ENA]
¢þ
>WENV180120564
OASP01000004
[OASP] human gut metagenome; faeces
144492
144419
-
Gly
GCC
[ENA]
¢þ
>WENV180120563
OASP01000004
[OASP] human gut metagenome; faeces
144581
144499
-
Leu
CAG
[ENA]
¢þ
>WENV180120562
OASP01000004
[OASP] human gut metagenome; faeces
144719
144646
-
Gly
GCC
[ENA]
¢þ
>WENV180120561
OASP01000004
[OASP] human gut metagenome; faeces
144825
144741
-
Leu
GAG
[ENA]
¢þ
>WENV180120560
OASP01000004
[OASP] human gut metagenome; faeces
144944
144862
-
Leu
CAG
[ENA]
¢þ
>WENV180120559
OASP01000004
[OASP] human gut metagenome; faeces
145042
144969
-
Gly
GCC
[ENA]
¢þ
>WENV180120558
OASP01000003
[OASP] human gut metagenome; faeces
149494
149422
-
Glu
TTC
[ENA]
¢þ
>WENV180120581
OASP01000010
[OASP] human gut metagenome; faeces
157931
157846
-
Ser
TGA
[ENA]
¢þ
>WENV180120597
OASP01000018
[OASP] human gut metagenome; faeces
159157
159082
-
Ala
GGC
[ENA]
¢þ
>WENV180120575
OASP01000008
[OASP] human gut metagenome; faeces
161666
161753
+
Ser
GGA
[ENA]
¢þ
>WENV180120549
OASP01000002
[OASP] human gut metagenome; faeces
165848
165774
-
His
GTG
[ENA]
¢þ
>WENV180120586
OASP01000011
[OASP] human gut metagenome; faeces
172255
172182
-
Gly
CCC
[ENA]
¢þ
>WENV180120593
OASP01000015
[OASP] human gut metagenome; faeces
185880
185794
-
Leu
CAG
[ENA]
¢þ
>WENV180120592
OASP01000015
[OASP] human gut metagenome; faeces
186001
185915
-
Leu
CAG
[ENA]
¢þ
>WENV180120591
OASP01000015
[OASP] human gut metagenome; faeces
186116
186030
-
Leu
CAG
[ENA]
¢þ
>WENV180120576
OASP01000008
[OASP] human gut metagenome; faeces
215120
215207
+
Ser
TGA
[ENA]
¢þ
>WENV180120587
OASP01000012
[OASP] human gut metagenome; faeces
229203
229130
-
Thr
CGT
[ENA]
¢þ
>WENV180120580
OASP01000010
[OASP] human gut metagenome; faeces
231496
231411
-
Ser
TGA
[ENA]
¢þ
>WENV180120572
OASP01000005
[OASP] human gut metagenome; faeces
258409
258333
-
Val
GAC
[ENA]
¢þ
>WENV180120571
OASP01000005
[OASP] human gut metagenome; faeces
258490
258414
-
Val
GAC
[ENA]
¢þ
>WENV180120574
OASP01000007
[OASP] human gut metagenome; faeces
264523
264448
-
Thr
CGT
[ENA]
¢þ
>WENV180120577
OASP01000009
[OASP] human gut metagenome; faeces
294581
294655
+
Thr
TGT
[ENA]
¢þ
>WENV180120557
OASP01000003
[OASP] human gut metagenome; faeces
295195
295113
-
Leu
TAG
[ENA]
¢þ
>WENV180120546
OASP01000001
[OASP] human gut metagenome; faeces
360650
360577
-
Lys
TTT
[ENA]
¢þ
>WENV180120548
OASP01000002
[OASP] human gut metagenome; faeces
375677
375603
-
Asp
GTC
[ENA]
¢þ
>WENV180120547
OASP01000002
[OASP] human gut metagenome; faeces
375781
375707
-
Asp
GTC
[ENA]
¢þ
>WENV180120551
OASP01000003
[OASP] human gut metagenome; faeces
412412
412485
+
Gly
GCC
[ENA]
¢þ
>WENV180120552
OASP01000003
[OASP] human gut metagenome; faeces
412499
412583
+
Leu
TAA
[ENA]
¢þ
>WENV180120556
OASP01000003
[OASP] human gut metagenome; faeces
424285
424212
-
Pro
CGG
[ENA]
¢þ
>WENV180120555
OASP01000003
[OASP] human gut metagenome; faeces
424370
424297
-
Phe
GAA
[ENA]
¢þ
>WENV180120542
OASP01000001
[OASP] human gut metagenome; faeces
440255
440329
+
Asp
GTC
[ENA]
¢þ
>WENV180120554
OASP01000003
[OASP] human gut metagenome; faeces
505766
505690
-
Met
CAT
[ENA]
¢þ
>WENV180120553
OASP01000003
[OASP] human gut metagenome; faeces
565248
565175
-
Lys
TTT
[ENA]
¢þ
>WENV180120543
OASP01000001
[OASP] human gut metagenome; faeces
640143
640217
+
Arg
TCT
[ENA]
¢þ
>WENV180120545
OASP01000001
[OASP] human gut metagenome; faeces
739290
739217
-
Lys
CTT
[ENA]
¢þ
>WENV180120544
OASP01000001
[OASP] human gut metagenome; faeces
742650
742577
-
Lys
CTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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