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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OATD] human gut metagenome; faeces
HIT:
122 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180129563
OATD01000070
[OATD] human gut metagenome; faeces
2
77
+
Asn
GTT
[ENA]
¢þ
>WENV180129566
OATD01000088
[OATD] human gut metagenome; faeces
63
138
+
Asn
GTT
[ENA]
¢þ
>WENV180129613
OATD01000249
[OATD] human gut metagenome; faeces
75
2
-
Pro
TGG
[ENA]
¢þ
>WENV180129591
OATD01000205
[OATD] human gut metagenome; faeces
82
171
+
Ser
TGA
[ENA]
¢þ
>WENV180129614
OATD01000328
[OATD] human gut metagenome; faeces
145
70
-
Met
CAT
[ENA]
¢þ
>WENV180129612
OATD01000249
[OATD] human gut metagenome; faeces
171
96
-
Arg
ACG
[ENA]
¢þ
>WENV180129567
OATD01000088
[OATD] human gut metagenome; faeces
176
267
+
Ser
GGA
[ENA]
¢þ
>WENV180129592
OATD01000205
[OATD] human gut metagenome; faeces
183
258
+
fMet
CAT
[ENA]
¢þ
>WENV180129590
OATD01000204
[OATD] human gut metagenome; faeces
221
294
+
Ile2
CAT
[ENA]
¢þ
>WENV180129611
OATD01000249
[OATD] human gut metagenome; faeces
266
181
-
Leu
TAA
[ENA]
¢þ
>WENV180129593
OATD01000205
[OATD] human gut metagenome; faeces
276
351
+
Asp
GTC
[ENA]
¢þ
>WENV180129568
OATD01000088
[OATD] human gut metagenome; faeces
280
353
+
Glu
TTC
[ENA]
¢þ
>WENV180129594
OATD01000205
[OATD] human gut metagenome; faeces
353
423
+
Gly
TCC
[ENA]
¢þ
>WENV180129610
OATD01000249
[OATD] human gut metagenome; faeces
354
283
-
Gly
GCC
[ENA]
¢þ
>WENV180129569
OATD01000088
[OATD] human gut metagenome; faeces
367
441
+
Val
TAC
[ENA]
¢þ
>WENV180129595
OATD01000205
[OATD] human gut metagenome; faeces
436
511
+
Ile
GAT
[ENA]
¢þ
>WENV180129609
OATD01000249
[OATD] human gut metagenome; faeces
439
364
-
Thr
TGT
[ENA]
¢þ
>WENV180129570
OATD01000088
[OATD] human gut metagenome; faeces
449
524
+
Asp
GTC
[ENA]
¢þ
>WENV180129596
OATD01000205
[OATD] human gut metagenome; faeces
534
623
+
Ser
GCT
[ENA]
¢þ
>WENV180129608
OATD01000249
[OATD] human gut metagenome; faeces
538
455
-
Leu
TAG
[ENA]
¢þ
>WENV180129571
OATD01000088
[OATD] human gut metagenome; faeces
558
633
+
Phe
GAA
[ENA]
¢þ
>WENV180129607
OATD01000249
[OATD] human gut metagenome; faeces
618
544
-
Lys
TTT
[ENA]
¢þ
>WENV180129572
OATD01000088
[OATD] human gut metagenome; faeces
634
716
+
Tyr
GTA
[ENA]
¢þ
>WENV180129597
OATD01000205
[OATD] human gut metagenome; faeces
643
716
+
Glu
TTC
[ENA]
¢þ
>WENV180129606
OATD01000249
[OATD] human gut metagenome; faeces
694
620
-
Val
TAC
[ENA]
¢þ
>WENV180129573
OATD01000088
[OATD] human gut metagenome; faeces
722
795
+
Trp
CCA
[ENA]
¢þ
>WENV180129598
OATD01000205
[OATD] human gut metagenome; faeces
738
827
+
Ser
TGA
[ENA]
¢þ
>WENV180129574
OATD01000088
[OATD] human gut metagenome; faeces
798
871
+
His
GTG
[ENA]
¢þ
>WENV180129599
OATD01000205
[OATD] human gut metagenome; faeces
839
914
+
fMet
CAT
[ENA]
¢þ
>WENV180129575
OATD01000088
[OATD] human gut metagenome; faeces
881
954
+
Gln
TTG
[ENA]
¢þ
>WENV180129600
OATD01000205
[OATD] human gut metagenome; faeces
931
1005
+
Asp
GTC
[ENA]
¢þ
>WENV180129605
OATD01000207
[OATD] human gut metagenome; faeces
988
1061
+
Ile2
CAT
[ENA]
¢þ
>WENV180129576
OATD01000088
[OATD] human gut metagenome; faeces
999
1069
+
Cys
GCA
[ENA]
¢þ
>WENV180129601
OATD01000205
[OATD] human gut metagenome; faeces
1007
1081
+
Phe
GAA
[ENA]
¢þ
>WENV180129602
OATD01000205
[OATD] human gut metagenome; faeces
1085
1155
+
Gly
TCC
[ENA]
¢þ
>WENV180129577
OATD01000088
[OATD] human gut metagenome; faeces
1089
1175
+
Leu
CAA
[ENA]
¢þ
>WENV180129603
OATD01000205
[OATD] human gut metagenome; faeces
1168
1243
+
Ile
GAT
[ENA]
¢þ
>WENV180129578
OATD01000088
[OATD] human gut metagenome; faeces
1236
1309
+
His
GTG
[ENA]
¢þ
>WENV180129604
OATD01000205
[OATD] human gut metagenome; faeces
1253
1326
+
Glu
TTC
[ENA]
¢þ
>WENV180129579
OATD01000088
[OATD] human gut metagenome; faeces
1319
1392
+
Gln
TTG
[ENA]
¢þ
>WENV180129580
OATD01000088
[OATD] human gut metagenome; faeces
1408
1494
+
Leu
CAA
[ENA]
¢þ
>WENV180129589
OATD01000198
[OATD] human gut metagenome; faeces
1512
1440
-
Thr
GGT
[ENA]
¢þ
>WENV180129527
OATD01000011
[OATD] human gut metagenome; faeces
1601
1527
-
Asp
GTC
[ENA]
¢þ
>WENV180129526
OATD01000011
[OATD] human gut metagenome; faeces
1705
1631
-
Asp
GTC
[ENA]
¢þ
>WENV180129586
OATD01000153
[OATD] human gut metagenome; faeces
1779
1851
+
Ala
TGC
[ENA]
¢þ
>WENV180129525
OATD01000011
[OATD] human gut metagenome; faeces
1809
1735
-
Asp
GTC
[ENA]
¢þ
>WENV180129524
OATD01000011
[OATD] human gut metagenome; faeces
1913
1839
-
Asp
GTC
[ENA]
¢þ
>WENV180129588
OATD01000161
[OATD] human gut metagenome; faeces
2170
2096
-
Ala
TGC
[ENA]
¢þ
>WENV180129587
OATD01000161
[OATD] human gut metagenome; faeces
2275
2199
-
Ile
GAT
[ENA]
¢þ
>WENV180129585
OATD01000132
[OATD] human gut metagenome; faeces
3737
3824
+
Ser
CGA
[ENA]
¢þ
>WENV180129544
OATD01000025
[OATD] human gut metagenome; faeces
3741
3666
-
Arg
CCT
[ENA]
¢þ
>WENV180129548
OATD01000027
[OATD] human gut metagenome; faeces
4987
5059
+
Gln
CTG
[ENA]
¢þ
>WENV180129582
OATD01000097
[OATD] human gut metagenome; faeces
5395
5322
-
Lys
TTT
[ENA]
¢þ
>WENV180129584
OATD01000115
[OATD] human gut metagenome; faeces
5634
5559
-
Phe
GAA
[ENA]
¢þ
>WENV180129564
OATD01000080
[OATD] human gut metagenome; faeces
7601
7527
-
Ile2
CAT
[ENA]
¢þ
>WENV180129506
OATD01000002
[OATD] human gut metagenome; faeces
7921
7848
-
Lys
TTT
[ENA]
¢þ
>WENV180129550
OATD01000027
[OATD] human gut metagenome; faeces
9514
9429
-
Leu
CAG
[ENA]
¢þ
>WENV180129557
OATD01000041
[OATD] human gut metagenome; faeces
9775
9700
-
Pro
GGG
[ENA]
¢þ
>WENV180129513
OATD01000005
[OATD] human gut metagenome; faeces
11744
11660
-
Leu
TAA
[ENA]
¢þ
>WENV180129512
OATD01000005
[OATD] human gut metagenome; faeces
11831
11758
-
Gly
GCC
[ENA]
¢þ
>WENV180129583
OATD01000109
[OATD] human gut metagenome; faeces
12924
12996
+
Lys
CTT
[ENA]
¢þ
>WENV180129562
OATD01000063
[OATD] human gut metagenome; faeces
13179
13104
-
Ile2
CAT
[ENA]
¢þ
>WENV180129581
OATD01000093
[OATD] human gut metagenome; faeces
14469
14388
-
Leu
CAG
[ENA]
¢þ
>WENV180129559
OATD01000048
[OATD] human gut metagenome; faeces
14715
14642
-
fMet
CAT
[ENA]
¢þ
>WENV180129542
OATD01000023
[OATD] human gut metagenome; faeces
16589
16661
+
Arg
CCT
[ENA]
¢þ
>WENV180129561
OATD01000061
[OATD] human gut metagenome; faeces
21285
21355
+
Gly
CCC
[ENA]
¢þ
>WENV180129565
OATD01000085
[OATD] human gut metagenome; faeces
22094
22167
+
Pro
CGG
[ENA]
¢þ
>WENV180129514
OATD01000006
[OATD] human gut metagenome; faeces
23216
23290
+
Thr
TGT
[ENA]
¢þ
>WENV180129530
OATD01000014
[OATD] human gut metagenome; faeces
26255
26183
-
Glu
CTC
[ENA]
¢þ
>WENV180129529
OATD01000014
[OATD] human gut metagenome; faeces
26420
26333
-
Ser
GCT
[ENA]
¢þ
>WENV180129555
OATD01000034
[OATD] human gut metagenome; faeces
28906
28978
+
Thr
CGT
[ENA]
¢þ
>WENV180129552
OATD01000028
[OATD] human gut metagenome; faeces
39804
39730
-
Asn
GTT
[ENA]
¢þ
>WENV180129551
OATD01000028
[OATD] human gut metagenome; faeces
39907
39833
-
Asn
GTT
[ENA]
¢þ
>WENV180129558
OATD01000047
[OATD] human gut metagenome; faeces
41166
41241
+
Phe
GAA
[ENA]
¢þ
>WENV180129518
OATD01000007
[OATD] human gut metagenome; faeces
45816
45733
-
Tyr
GTA
[ENA]
¢þ
>WENV180129539
OATD01000016
[OATD] human gut metagenome; faeces
47741
47668
-
Arg
CCG
[ENA]
¢þ
>WENV180129560
OATD01000049
[OATD] human gut metagenome; faeces
52693
52617
-
Arg
ACG
[ENA]
¢þ
>WENV180129556
OATD01000041
[OATD] human gut metagenome; faeces
54386
54457
+
Gln
CTG
[ENA]
¢þ
>WENV180129523
OATD01000010
[OATD] human gut metagenome; faeces
55446
55373
-
Trp
CCA
[ENA]
¢þ
>WENV180129522
OATD01000010
[OATD] human gut metagenome; faeces
56806
56734
-
Thr
GGT
[ENA]
¢þ
>WENV180129521
OATD01000010
[OATD] human gut metagenome; faeces
57003
56920
-
Tyr
GTA
[ENA]
¢þ
>WENV180129520
OATD01000010
[OATD] human gut metagenome; faeces
57151
57077
-
Thr
TGT
[ENA]
¢þ
>WENV180129543
OATD01000025
[OATD] human gut metagenome; faeces
57849
57775
-
Arg
TCT
[ENA]
¢þ
>WENV180129547
OATD01000026
[OATD] human gut metagenome; faeces
60190
60115
-
Val
TAC
[ENA]
¢þ
>WENV180129546
OATD01000026
[OATD] human gut metagenome; faeces
60316
60241
-
Val
TAC
[ENA]
¢þ
>WENV180129545
OATD01000026
[OATD] human gut metagenome; faeces
60420
60345
-
Val
TAC
[ENA]
¢þ
>WENV180129541
OATD01000020
[OATD] human gut metagenome; faeces
75194
75270
+
Met
CAT
[ENA]
¢þ
>WENV180129537
OATD01000016
[OATD] human gut metagenome; faeces
75416
75496
+
Tyr
GTA
[ENA]
¢þ
>WENV180129538
OATD01000016
[OATD] human gut metagenome; faeces
75502
75575
+
Gln
TTG
[ENA]
¢þ
>WENV180129554
OATD01000031
[OATD] human gut metagenome; faeces
76985
76912
-
Trp
CCA
[ENA]
¢þ
>WENV180129553
OATD01000030
[OATD] human gut metagenome; faeces
84648
84722
+
Thr
TGT
[ENA]
¢þ
>WENV180129502
OATD01000002
[OATD] human gut metagenome; faeces
89065
89139
+
Asp
GTC
[ENA]
¢þ
>WENV180129540
OATD01000018
[OATD] human gut metagenome; faeces
93324
93251
-
Thr
CGT
[ENA]
¢þ
>WENV180129549
OATD01000027
[OATD] human gut metagenome; faeces
98567
98651
+
Leu
GAG
[ENA]
¢þ
>WENV180129515
OATD01000006
[OATD] human gut metagenome; faeces
112780
112865
+
Ser
TGA
[ENA]
¢þ
>WENV180129536
OATD01000015
[OATD] human gut metagenome; faeces
116884
116802
-
Tyr
GTA
[ENA]
¢þ
>WENV180129535
OATD01000015
[OATD] human gut metagenome; faeces
117120
117048
-
Glu
TTC
[ENA]
¢þ
>WENV180129534
OATD01000015
[OATD] human gut metagenome; faeces
117196
117125
-
Gln
TTG
[ENA]
¢þ
>WENV180129533
OATD01000015
[OATD] human gut metagenome; faeces
117274
117201
-
Trp
CCA
[ENA]
¢þ
>WENV180129532
OATD01000015
[OATD] human gut metagenome; faeces
117354
117281
-
Asn
GTT
[ENA]
¢þ
>WENV180129531
OATD01000015
[OATD] human gut metagenome; faeces
117644
117571
-
fMet
CAT
[ENA]
¢þ
>WENV180129510
OATD01000005
[OATD] human gut metagenome; faeces
124137
124219
+
Leu
TAG
[ENA]
¢þ
>WENV180129528
OATD01000012
[OATD] human gut metagenome; faeces
136352
136423
+
Gln
TTG
[ENA]
¢þ
>WENV180129507
OATD01000003
[OATD] human gut metagenome; faeces
139971
140045
+
His
GTG
[ENA]
¢þ
>WENV180129519
OATD01000010
[OATD] human gut metagenome; faeces
153740
153656
-
Leu
CAA
[ENA]
¢þ
>WENV180129516
OATD01000006
[OATD] human gut metagenome; faeces
186997
187082
+
Ser
TGA
[ENA]
¢þ
>WENV180129508
OATD01000003
[OATD] human gut metagenome; faeces
198580
198654
+
Ala
GGC
[ENA]
¢þ
>WENV180129517
OATD01000006
[OATD] human gut metagenome; faeces
222001
222073
+
Cys
GCA
[ENA]
¢þ
>WENV180129509
OATD01000004
[OATD] human gut metagenome; faeces
222762
222850
+
Ser
GGA
[ENA]
¢þ
>WENV180129511
OATD01000005
[OATD] human gut metagenome; faeces
265895
265967
+
Glu
TTC
[ENA]
¢þ
>WENV180129503
OATD01000002
[OATD] human gut metagenome; faeces
285907
285981
+
Arg
TCT
[ENA]
¢þ
>WENV180129493
OATD01000001
[OATD] human gut metagenome; faeces
302329
302402
+
Gly
GCC
[ENA]
¢þ
>WENV180129494
OATD01000001
[OATD] human gut metagenome; faeces
302427
302509
+
Leu
CAG
[ENA]
¢þ
>WENV180129495
OATD01000001
[OATD] human gut metagenome; faeces
302546
302630
+
Leu
GAG
[ENA]
¢þ
>WENV180129496
OATD01000001
[OATD] human gut metagenome; faeces
302652
302725
+
Gly
GCC
[ENA]
¢þ
>WENV180129497
OATD01000001
[OATD] human gut metagenome; faeces
302790
302872
+
Leu
CAG
[ENA]
¢þ
>WENV180129498
OATD01000001
[OATD] human gut metagenome; faeces
302879
302952
+
Gly
GCC
[ENA]
¢þ
>WENV180129505
OATD01000002
[OATD] human gut metagenome; faeces
336107
336034
-
Lys
CTT
[ENA]
¢þ
>WENV180129504
OATD01000002
[OATD] human gut metagenome; faeces
339469
339396
-
Lys
CTT
[ENA]
¢þ
>WENV180129499
OATD01000001
[OATD] human gut metagenome; faeces
348172
348245
+
Gly
CCC
[ENA]
¢þ
>WENV180129500
OATD01000001
[OATD] human gut metagenome; faeces
442978
443053
+
Pro
TGG
[ENA]
¢þ
>WENV180129501
OATD01000001
[OATD] human gut metagenome; faeces
443090
443165
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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