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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OATZ] human gut metagenome; faeces
HIT:
110 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180144071
OATZ01000205
[OATZ] human gut metagenome; faeces
69
143
+
Val
TAC
[ENA]
¢þ
>WENV180144082
OATZ01000317
[OATZ] human gut metagenome; faeces
77
3
-
Thr
TGT
[ENA]
¢þ
>WENV180144081
OATZ01000256
[OATZ] human gut metagenome; faeces
93
184
+
Ser
GGA
[ENA]
¢þ
>WENV180144072
OATZ01000205
[OATZ] human gut metagenome; faeces
151
226
+
Asp
GTC
[ENA]
¢þ
>WENV180144070
OATZ01000178
[OATZ] human gut metagenome; faeces
221
294
+
Ile2
CAT
[ENA]
¢þ
>WENV180144073
OATZ01000205
[OATZ] human gut metagenome; faeces
260
335
+
Phe
GAA
[ENA]
¢þ
>WENV180144080
OATZ01000215
[OATZ] human gut metagenome; faeces
294
221
-
Ile2
CAT
[ENA]
¢þ
>WENV180144074
OATZ01000205
[OATZ] human gut metagenome; faeces
336
418
+
Tyr
GTA
[ENA]
¢þ
>WENV180144075
OATZ01000205
[OATZ] human gut metagenome; faeces
424
497
+
Trp
CCA
[ENA]
¢þ
>WENV180144026
OATZ01000029
[OATZ] human gut metagenome; faeces
455
370
-
Leu
CAG
[ENA]
¢þ
>WENV180144076
OATZ01000205
[OATZ] human gut metagenome; faeces
500
573
+
His
GTG
[ENA]
¢þ
>WENV180144077
OATZ01000205
[OATZ] human gut metagenome; faeces
581
654
+
Gln
TTG
[ENA]
¢þ
>WENV180144078
OATZ01000205
[OATZ] human gut metagenome; faeces
699
769
+
Cys
GCA
[ENA]
¢þ
>WENV180144079
OATZ01000205
[OATZ] human gut metagenome; faeces
789
875
+
Leu
CAA
[ENA]
¢þ
>WENV180144034
OATZ01000061
[OATZ] human gut metagenome; faeces
1512
1440
-
Thr
GGT
[ENA]
¢þ
>WENV180144033
OATZ01000061
[OATZ] human gut metagenome; faeces
1725
1800
+
Asn
GTT
[ENA]
¢þ
>WENV180144067
OATZ01000134
[OATZ] human gut metagenome; faeces
2277
2353
+
Ile
GAT
[ENA]
¢þ
>WENV180143996
OATZ01000006
[OATZ] human gut metagenome; faeces
2327
2254
-
Gly
GCC
[ENA]
¢þ
>WENV180144068
OATZ01000134
[OATZ] human gut metagenome; faeces
2382
2456
+
Ala
TGC
[ENA]
¢þ
>WENV180143995
OATZ01000006
[OATZ] human gut metagenome; faeces
2416
2334
-
Leu
CAG
[ENA]
¢þ
>WENV180143994
OATZ01000006
[OATZ] human gut metagenome; faeces
2554
2481
-
Gly
GCC
[ENA]
¢þ
>WENV180143993
OATZ01000006
[OATZ] human gut metagenome; faeces
2660
2576
-
Leu
GAG
[ENA]
¢þ
>WENV180143992
OATZ01000006
[OATZ] human gut metagenome; faeces
2779
2697
-
Leu
CAG
[ENA]
¢þ
>WENV180143991
OATZ01000006
[OATZ] human gut metagenome; faeces
2877
2804
-
Gly
GCC
[ENA]
¢þ
>WENV180144042
OATZ01000128
[OATZ] human gut metagenome; faeces
3483
3557
+
Val
TAC
[ENA]
¢þ
>WENV180144043
OATZ01000128
[OATZ] human gut metagenome; faeces
3559
3633
+
Lys
TTT
[ENA]
¢þ
>WENV180144044
OATZ01000128
[OATZ] human gut metagenome; faeces
3639
3722
+
Leu
TAG
[ENA]
¢þ
>WENV180144039
OATZ01000106
[OATZ] human gut metagenome; faeces
3737
3824
+
Ser
CGA
[ENA]
¢þ
>WENV180144045
OATZ01000128
[OATZ] human gut metagenome; faeces
3738
3813
+
Thr
TGT
[ENA]
¢þ
>WENV180144046
OATZ01000128
[OATZ] human gut metagenome; faeces
3823
3894
+
Gly
GCC
[ENA]
¢þ
>WENV180144047
OATZ01000128
[OATZ] human gut metagenome; faeces
3911
3996
+
Leu
TAA
[ENA]
¢þ
>WENV180144048
OATZ01000128
[OATZ] human gut metagenome; faeces
4006
4081
+
Arg
ACG
[ENA]
¢þ
>WENV180144049
OATZ01000128
[OATZ] human gut metagenome; faeces
4090
4163
+
Pro
TGG
[ENA]
¢þ
>WENV180144069
OATZ01000136
[OATZ] human gut metagenome; faeces
4106
4179
+
Ile2
CAT
[ENA]
¢þ
>WENV180144050
OATZ01000128
[OATZ] human gut metagenome; faeces
4183
4255
+
Ala
TGC
[ENA]
¢þ
>WENV180144051
OATZ01000128
[OATZ] human gut metagenome; faeces
4282
4357
+
Met
CAT
[ENA]
¢þ
>WENV180144052
OATZ01000128
[OATZ] human gut metagenome; faeces
4369
4444
+
Ile2
CAT
[ENA]
¢þ
>WENV180144053
OATZ01000128
[OATZ] human gut metagenome; faeces
4467
4556
+
Ser
TGA
[ENA]
¢þ
>WENV180144054
OATZ01000128
[OATZ] human gut metagenome; faeces
4568
4643
+
fMet
CAT
[ENA]
¢þ
>WENV180144055
OATZ01000128
[OATZ] human gut metagenome; faeces
4661
4736
+
Asp
GTC
[ENA]
¢þ
>WENV180144056
OATZ01000128
[OATZ] human gut metagenome; faeces
4738
4808
+
Gly
TCC
[ENA]
¢þ
>WENV180144018
OATZ01000022
[OATZ] human gut metagenome; faeces
4805
4730
-
Arg
CCT
[ENA]
¢þ
>WENV180144057
OATZ01000128
[OATZ] human gut metagenome; faeces
4821
4896
+
Ile
GAT
[ENA]
¢þ
>WENV180144058
OATZ01000128
[OATZ] human gut metagenome; faeces
4919
5008
+
Ser
GCT
[ENA]
¢þ
>WENV180144040
OATZ01000111
[OATZ] human gut metagenome; faeces
4987
5059
+
Gln
CTG
[ENA]
¢þ
>WENV180144059
OATZ01000128
[OATZ] human gut metagenome; faeces
5028
5101
+
Glu
TTC
[ENA]
¢þ
>WENV180144035
OATZ01000074
[OATZ] human gut metagenome; faeces
5063
4989
-
Thr
TGT
[ENA]
¢þ
>WENV180144060
OATZ01000128
[OATZ] human gut metagenome; faeces
5123
5212
+
Ser
TGA
[ENA]
¢þ
>WENV180144061
OATZ01000128
[OATZ] human gut metagenome; faeces
5224
5299
+
fMet
CAT
[ENA]
¢þ
>WENV180144062
OATZ01000128
[OATZ] human gut metagenome; faeces
5316
5390
+
Asp
GTC
[ENA]
¢þ
>WENV180144063
OATZ01000128
[OATZ] human gut metagenome; faeces
5392
5466
+
Phe
GAA
[ENA]
¢þ
>WENV180144064
OATZ01000128
[OATZ] human gut metagenome; faeces
5470
5540
+
Gly
TCC
[ENA]
¢þ
>WENV180144065
OATZ01000128
[OATZ] human gut metagenome; faeces
5553
5628
+
Ile
GAT
[ENA]
¢þ
>WENV180144066
OATZ01000128
[OATZ] human gut metagenome; faeces
5638
5711
+
Glu
TTC
[ENA]
¢þ
>WENV180143989
OATZ01000005
[OATZ] human gut metagenome; faeces
6273
6346
+
Phe
GAA
[ENA]
¢þ
>WENV180144003
OATZ01000009
[OATZ] human gut metagenome; faeces
7585
7511
-
Ile2
CAT
[ENA]
¢þ
>WENV180144038
OATZ01000088
[OATZ] human gut metagenome; faeces
7594
7520
-
Asp
GTC
[ENA]
¢þ
>WENV180144041
OATZ01000113
[OATZ] human gut metagenome; faeces
7596
7520
-
Arg
ACG
[ENA]
¢þ
>WENV180144037
OATZ01000088
[OATZ] human gut metagenome; faeces
7698
7624
-
Asp
GTC
[ENA]
¢þ
>WENV180144008
OATZ01000013
[OATZ] human gut metagenome; faeces
10530
10603
+
Lys
TTT
[ENA]
¢þ
>WENV180144028
OATZ01000047
[OATZ] human gut metagenome; faeces
12829
12756
-
fMet
CAT
[ENA]
¢þ
>WENV180144030
OATZ01000054
[OATZ] human gut metagenome; faeces
13179
13104
-
Ile2
CAT
[ENA]
¢þ
>WENV180144036
OATZ01000084
[OATZ] human gut metagenome; faeces
14422
14341
-
Leu
CAG
[ENA]
¢þ
>WENV180144032
OATZ01000060
[OATZ] human gut metagenome; faeces
15605
15689
+
Leu
CAA
[ENA]
¢þ
>WENV180144023
OATZ01000027
[OATZ] human gut metagenome; faeces
20642
20727
+
Ser
TGA
[ENA]
¢þ
>WENV180144029
OATZ01000051
[OATZ] human gut metagenome; faeces
21323
21393
+
Gly
CCC
[ENA]
¢þ
>WENV180143997
OATZ01000007
[OATZ] human gut metagenome; faeces
22588
22661
+
Thr
CGT
[ENA]
¢þ
>WENV180144031
OATZ01000055
[OATZ] human gut metagenome; faeces
25887
25958
+
Gln
TTG
[ENA]
¢þ
>WENV180144019
OATZ01000023
[OATZ] human gut metagenome; faeces
40859
40786
-
Gly
CCC
[ENA]
¢þ
>WENV180144015
OATZ01000016
[OATZ] human gut metagenome; faeces
47741
47668
-
Arg
CCG
[ENA]
¢þ
>WENV180144022
OATZ01000026
[OATZ] human gut metagenome; faeces
56419
56344
-
Val
TAC
[ENA]
¢þ
>WENV180144021
OATZ01000026
[OATZ] human gut metagenome; faeces
56545
56470
-
Val
TAC
[ENA]
¢þ
>WENV180144020
OATZ01000026
[OATZ] human gut metagenome; faeces
56649
56574
-
Val
TAC
[ENA]
¢þ
>WENV180144017
OATZ01000022
[OATZ] human gut metagenome; faeces
58913
58839
-
Arg
TCT
[ENA]
¢þ
>WENV180144027
OATZ01000036
[OATZ] human gut metagenome; faeces
63813
63885
+
Thr
CGT
[ENA]
¢þ
>WENV180143982
OATZ01000002
[OATZ] human gut metagenome; faeces
64800
64727
-
Lys
TTT
[ENA]
¢þ
>WENV180144009
OATZ01000013
[OATZ] human gut metagenome; faeces
65310
65386
+
Met
CAT
[ENA]
¢þ
>WENV180144013
OATZ01000016
[OATZ] human gut metagenome; faeces
75416
75496
+
Tyr
GTA
[ENA]
¢þ
>WENV180144014
OATZ01000016
[OATZ] human gut metagenome; faeces
75502
75575
+
Gln
TTG
[ENA]
¢þ
>WENV180144016
OATZ01000020
[OATZ] human gut metagenome; faeces
80980
81052
+
Cys
GCA
[ENA]
¢þ
>WENV180144012
OATZ01000014
[OATZ] human gut metagenome; faeces
89025
89113
+
Ser
GGA
[ENA]
¢þ
>WENV180144025
OATZ01000029
[OATZ] human gut metagenome; faeces
89508
89592
+
Leu
GAG
[ENA]
¢þ
>WENV180144024
OATZ01000027
[OATZ] human gut metagenome; faeces
95461
95546
+
Ser
TGA
[ENA]
¢þ
>WENV180144004
OATZ01000011
[OATZ] human gut metagenome; faeces
99717
99791
+
Thr
TGT
[ENA]
¢þ
>WENV180144005
OATZ01000011
[OATZ] human gut metagenome; faeces
99865
99948
+
Tyr
GTA
[ENA]
¢þ
>WENV180144006
OATZ01000011
[OATZ] human gut metagenome; faeces
100062
100134
+
Thr
GGT
[ENA]
¢þ
>WENV180144000
OATZ01000009
[OATZ] human gut metagenome; faeces
100097
100169
+
Arg
CCT
[ENA]
¢þ
>WENV180143987
OATZ01000004
[OATZ] human gut metagenome; faeces
100285
100372
+
Ser
GCT
[ENA]
¢þ
>WENV180143988
OATZ01000004
[OATZ] human gut metagenome; faeces
100450
100522
+
Glu
CTC
[ENA]
¢þ
>WENV180144007
OATZ01000011
[OATZ] human gut metagenome; faeces
101422
101495
+
Trp
CCA
[ENA]
¢þ
>WENV180143986
OATZ01000003
[OATZ] human gut metagenome; faeces
121092
121020
-
Glu
TTC
[ENA]
¢þ
>WENV180143999
OATZ01000008
[OATZ] human gut metagenome; faeces
124948
124874
-
Ala
GGC
[ENA]
¢þ
>WENV180143990
OATZ01000005
[OATZ] human gut metagenome; faeces
135113
135186
+
Trp
CCA
[ENA]
¢þ
>WENV180143976
OATZ01000002
[OATZ] human gut metagenome; faeces
144949
145023
+
Asp
GTC
[ENA]
¢þ
>WENV180144010
OATZ01000013
[OATZ] human gut metagenome; faeces
150414
150487
+
Phe
GAA
[ENA]
¢þ
>WENV180144011
OATZ01000013
[OATZ] human gut metagenome; faeces
150499
150572
+
Pro
CGG
[ENA]
¢þ
>WENV180144002
OATZ01000009
[OATZ] human gut metagenome; faeces
173601
173527
-
Asn
GTT
[ENA]
¢þ
>WENV180144001
OATZ01000009
[OATZ] human gut metagenome; faeces
173704
173630
-
Asn
GTT
[ENA]
¢þ
>WENV180143998
OATZ01000008
[OATZ] human gut metagenome; faeces
183509
183435
-
His
GTG
[ENA]
¢þ
>WENV180143973
OATZ01000001
[OATZ] human gut metagenome; faeces
245629
245712
+
Tyr
GTA
[ENA]
¢þ
>WENV180143985
OATZ01000003
[OATZ] human gut metagenome; faeces
265811
265729
-
Leu
TAG
[ENA]
¢þ
>WENV180143977
OATZ01000002
[OATZ] human gut metagenome; faeces
353973
354047
+
Arg
TCT
[ENA]
¢þ
>WENV180143983
OATZ01000003
[OATZ] human gut metagenome; faeces
383372
383445
+
Gly
GCC
[ENA]
¢þ
>WENV180143984
OATZ01000003
[OATZ] human gut metagenome; faeces
383459
383543
+
Leu
TAA
[ENA]
¢þ
>WENV180143981
OATZ01000002
[OATZ] human gut metagenome; faeces
404172
404099
-
Lys
CTT
[ENA]
¢þ
>WENV180143980
OATZ01000002
[OATZ] human gut metagenome; faeces
407533
407460
-
Lys
CTT
[ENA]
¢þ
>WENV180143979
OATZ01000002
[OATZ] human gut metagenome; faeces
425790
425715
-
Pro
TGG
[ENA]
¢þ
>WENV180143978
OATZ01000002
[OATZ] human gut metagenome; faeces
425895
425820
-
Pro
TGG
[ENA]
¢þ
>WENV180143975
OATZ01000001
[OATZ] human gut metagenome; faeces
485253
485182
-
Gln
CTG
[ENA]
¢þ
>WENV180143974
OATZ01000001
[OATZ] human gut metagenome; faeces
536470
536545
+
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK