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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OAUD] human gut metagenome; faeces
HIT:
95 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180145820
OAUD01000094
[OAUD] human gut metagenome; faeces
1
77
+
Asp
GTC
[ENA]
¢þ
>WENV180145837
OAUD01001281
[OAUD] human gut metagenome; faeces
36
109
+
Gln
TTG
[ENA]
¢þ
>WENV180145845
OAUD01003438
[OAUD] human gut metagenome; faeces
43
118
+
Met
CAT
[ENA]
¢þ
>WENV180145822
OAUD01000104
[OAUD] human gut metagenome; faeces
57
132
+
Lys
TTT
[ENA]
¢þ
>WENV180145849
OAUD01003684
[OAUD] human gut metagenome; faeces
78
2
-
Asp
GTC
[ENA]
¢þ
>WENV180145848
OAUD01003683
[OAUD] human gut metagenome; faeces
79
4
-
Val
TAC
[ENA]
¢þ
>WENV180145839
OAUD01001582
[OAUD] human gut metagenome; faeces
104
180
+
Ile
GAT
[ENA]
¢þ
>WENV180145782
OAUD01000018
[OAUD] human gut metagenome; faeces
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180145847
OAUD01003667
[OAUD] human gut metagenome; faeces
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180145834
OAUD01000370
[OAUD] human gut metagenome; faeces
116
189
+
Arg
CCG
[ENA]
¢þ
>WENV180145843
OAUD01001927
[OAUD] human gut metagenome; faeces
121
196
+
Glu
TTC
[ENA]
¢þ
>WENV180145844
OAUD01002217
[OAUD] human gut metagenome; faeces
123
49
-
Ala
TGC
[ENA]
¢þ
>WENV180145831
OAUD01000122
[OAUD] human gut metagenome; faeces
130
59
-
Gly
GCC
[ENA]
¢þ
>WENV180145838
OAUD01001281
[OAUD] human gut metagenome; faeces
134
204
+
Cys
GCA
[ENA]
¢þ
>WENV180145846
OAUD01003438
[OAUD] human gut metagenome; faeces
137
212
+
Ile2
CAT
[ENA]
¢þ
>WENV180145783
OAUD01000018
[OAUD] human gut metagenome; faeces
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180145830
OAUD01000122
[OAUD] human gut metagenome; faeces
210
135
-
Thr
TGT
[ENA]
¢þ
>WENV180145840
OAUD01001582
[OAUD] human gut metagenome; faeces
223
298
+
Ala
TGC
[ENA]
¢þ
>WENV180145841
OAUD01001604
[OAUD] human gut metagenome; faeces
261
338
+
Leu
TAA
[ENA]
¢þ
>WENV180145836
OAUD01001053
[OAUD] human gut metagenome; faeces
274
349
+
Arg
CCT
[ENA]
¢þ
>WENV180145829
OAUD01000122
[OAUD] human gut metagenome; faeces
299
216
-
Leu
TAG
[ENA]
¢þ
>WENV180145835
OAUD01000642
[OAUD] human gut metagenome; faeces
324
395
+
Trp
CCA
[ENA]
¢þ
>WENV180145842
OAUD01001830
[OAUD] human gut metagenome; faeces
339
413
+
Lys
CTT
[ENA]
¢þ
>WENV180145826
OAUD01000113
[OAUD] human gut metagenome; faeces
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV180145828
OAUD01000122
[OAUD] human gut metagenome; faeces
388
314
-
Lys
TTT
[ENA]
¢þ
>WENV180145825
OAUD01000113
[OAUD] human gut metagenome; faeces
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180145832
OAUD01000151
[OAUD] human gut metagenome; faeces
465
541
+
Arg
TCT
[ENA]
¢þ
>WENV180145827
OAUD01000122
[OAUD] human gut metagenome; faeces
467
393
-
Val
TAC
[ENA]
¢þ
>WENV180145824
OAUD01000113
[OAUD] human gut metagenome; faeces
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180145823
OAUD01000113
[OAUD] human gut metagenome; faeces
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180145833
OAUD01000347
[OAUD] human gut metagenome; faeces
1106
1033
-
Pro
TGG
[ENA]
¢þ
>WENV180145806
OAUD01000033
[OAUD] human gut metagenome; faeces
1159
1084
-
Ile2
CAT
[ENA]
¢þ
>WENV180145773
OAUD01000010
[OAUD] human gut metagenome; faeces
1735
1662
-
Gly
CCC
[ENA]
¢þ
>WENV180145821
OAUD01000095
[OAUD] human gut metagenome; faeces
2028
1941
-
Ser
GGA
[ENA]
¢þ
>WENV180145755
OAUD01000002
[OAUD] human gut metagenome; faeces
3102
3028
-
Arg
CCT
[ENA]
¢þ
>WENV180145819
OAUD01000069
[OAUD] human gut metagenome; faeces
5086
5161
+
Phe
GAA
[ENA]
¢þ
>WENV180145815
OAUD01000063
[OAUD] human gut metagenome; faeces
6882
6793
-
Ser
CGA
[ENA]
¢þ
>WENV180145814
OAUD01000063
[OAUD] human gut metagenome; faeces
7874
7949
+
Asn
GTT
[ENA]
¢þ
>WENV180145811
OAUD01000045
[OAUD] human gut metagenome; faeces
8321
8407
+
Leu
GAG
[ENA]
¢þ
>WENV180145780
OAUD01000016
[OAUD] human gut metagenome; faeces
11788
11863
+
Phe
GAA
[ENA]
¢þ
>WENV180145812
OAUD01000045
[OAUD] human gut metagenome; faeces
12190
12266
+
fMet
CAT
[ENA]
¢þ
>WENV180145813
OAUD01000048
[OAUD] human gut metagenome; faeces
14108
14033
-
Thr
CGT
[ENA]
¢þ
>WENV180145775
OAUD01000012
[OAUD] human gut metagenome; faeces
16462
16386
-
Arg
TCT
[ENA]
¢þ
>WENV180145774
OAUD01000012
[OAUD] human gut metagenome; faeces
16635
16560
-
Ile2
CAT
[ENA]
¢þ
>WENV180145763
OAUD01000007
[OAUD] human gut metagenome; faeces
17285
17201
-
Leu
CAA
[ENA]
¢þ
>WENV180145816
OAUD01000066
[OAUD] human gut metagenome; faeces
17548
17623
+
Gly
GCC
[ENA]
¢þ
>WENV180145817
OAUD01000066
[OAUD] human gut metagenome; faeces
17659
17734
+
Gly
GCC
[ENA]
¢þ
>WENV180145818
OAUD01000066
[OAUD] human gut metagenome; faeces
17770
17845
+
Gly
GCC
[ENA]
¢þ
>WENV180145788
OAUD01000020
[OAUD] human gut metagenome; faeces
18130
18217
+
Ser
TGA
[ENA]
¢þ
>WENV180145791
OAUD01000025
[OAUD] human gut metagenome; faeces
22386
22480
+
SeC
TCA
[ENA]
¢þ
>WENV180145810
OAUD01000042
[OAUD] human gut metagenome; faeces
24511
24436
-
Asn
GTT
[ENA]
¢þ
>WENV180145808
OAUD01000042
[OAUD] human gut metagenome; faeces
26260
26335
+
Asn
GTT
[ENA]
¢þ
>WENV180145809
OAUD01000042
[OAUD] human gut metagenome; faeces
28669
28744
+
Asn
GTT
[ENA]
¢þ
>WENV180145793
OAUD01000026
[OAUD] human gut metagenome; faeces
30512
30428
-
Tyr
GTA
[ENA]
¢þ
>WENV180145792
OAUD01000026
[OAUD] human gut metagenome; faeces
30631
30547
-
Tyr
GTA
[ENA]
¢þ
>WENV180145766
OAUD01000009
[OAUD] human gut metagenome; faeces
30879
30955
+
Met
CAT
[ENA]
¢þ
>WENV180145767
OAUD01000009
[OAUD] human gut metagenome; faeces
30964
31048
+
Leu
TAG
[ENA]
¢þ
>WENV180145768
OAUD01000009
[OAUD] human gut metagenome; faeces
31072
31146
+
Gln
TTG
[ENA]
¢þ
>WENV180145769
OAUD01000009
[OAUD] human gut metagenome; faeces
31181
31255
+
Gln
TTG
[ENA]
¢þ
>WENV180145770
OAUD01000009
[OAUD] human gut metagenome; faeces
31271
31347
+
Met
CAT
[ENA]
¢þ
>WENV180145771
OAUD01000009
[OAUD] human gut metagenome; faeces
31396
31470
+
Gln
CTG
[ENA]
¢þ
>WENV180145772
OAUD01000009
[OAUD] human gut metagenome; faeces
31508
31582
+
Gln
CTG
[ENA]
¢þ
>WENV180145805
OAUD01000033
[OAUD] human gut metagenome; faeces
33289
33213
-
Arg
ACG
[ENA]
¢þ
>WENV180145804
OAUD01000033
[OAUD] human gut metagenome; faeces
33564
33488
-
Arg
ACG
[ENA]
¢þ
>WENV180145803
OAUD01000033
[OAUD] human gut metagenome; faeces
33660
33568
-
Ser
GCT
[ENA]
¢þ
>WENV180145807
OAUD01000037
[OAUD] human gut metagenome; faeces
34978
35054
+
Pro
CGG
[ENA]
¢þ
>WENV180145784
OAUD01000018
[OAUD] human gut metagenome; faeces
35612
35688
+
Arg
CCG
[ENA]
¢þ
>WENV180145785
OAUD01000018
[OAUD] human gut metagenome; faeces
35747
35822
+
His
GTG
[ENA]
¢þ
>WENV180145786
OAUD01000018
[OAUD] human gut metagenome; faeces
35843
35929
+
Leu
CAG
[ENA]
¢þ
>WENV180145787
OAUD01000018
[OAUD] human gut metagenome; faeces
35972
36048
+
Pro
TGG
[ENA]
¢þ
>WENV180145794
OAUD01000027
[OAUD] human gut metagenome; faeces
40743
40818
+
Lys
TTT
[ENA]
¢þ
>WENV180145795
OAUD01000027
[OAUD] human gut metagenome; faeces
40954
41029
+
Val
TAC
[ENA]
¢þ
>WENV180145796
OAUD01000027
[OAUD] human gut metagenome; faeces
41034
41109
+
Lys
TTT
[ENA]
¢þ
>WENV180145797
OAUD01000027
[OAUD] human gut metagenome; faeces
41259
41334
+
Val
TAC
[ENA]
¢þ
>WENV180145798
OAUD01000027
[OAUD] human gut metagenome; faeces
41339
41414
+
Lys
TTT
[ENA]
¢þ
>WENV180145799
OAUD01000027
[OAUD] human gut metagenome; faeces
41561
41636
+
Lys
TTT
[ENA]
¢þ
>WENV180145800
OAUD01000027
[OAUD] human gut metagenome; faeces
41670
41745
+
Lys
TTT
[ENA]
¢þ
>WENV180145777
OAUD01000014
[OAUD] human gut metagenome; faeces
47190
47266
+
fMet
CAT
[ENA]
¢þ
>WENV180145778
OAUD01000014
[OAUD] human gut metagenome; faeces
47300
47376
+
fMet
CAT
[ENA]
¢þ
>WENV180145779
OAUD01000014
[OAUD] human gut metagenome; faeces
47410
47486
+
fMet
CAT
[ENA]
¢þ
>WENV180145756
OAUD01000003
[OAUD] human gut metagenome; faeces
49319
49405
+
Leu
CAG
[ENA]
¢þ
>WENV180145757
OAUD01000003
[OAUD] human gut metagenome; faeces
49434
49520
+
Leu
CAG
[ENA]
¢þ
>WENV180145758
OAUD01000003
[OAUD] human gut metagenome; faeces
49555
49641
+
Leu
CAG
[ENA]
¢þ
>WENV180145789
OAUD01000023
[OAUD] human gut metagenome; faeces
56659
56734
+
Thr
TGT
[ENA]
¢þ
>WENV180145790
OAUD01000023
[OAUD] human gut metagenome; faeces
56738
56812
+
Gly
TCC
[ENA]
¢þ
>WENV180145802
OAUD01000030
[OAUD] human gut metagenome; faeces
63710
63635
-
Ala
GGC
[ENA]
¢þ
>WENV180145801
OAUD01000030
[OAUD] human gut metagenome; faeces
63825
63750
-
Ala
GGC
[ENA]
¢þ
>WENV180145765
OAUD01000008
[OAUD] human gut metagenome; faeces
66332
66256
-
Val
GAC
[ENA]
¢þ
>WENV180145764
OAUD01000008
[OAUD] human gut metagenome; faeces
66413
66337
-
Val
GAC
[ENA]
¢þ
>WENV180145781
OAUD01000017
[OAUD] human gut metagenome; faeces
74640
74716
+
Pro
GGG
[ENA]
¢þ
>WENV180145776
OAUD01000013
[OAUD] human gut metagenome; faeces
85926
85851
-
Ile2
CAT
[ENA]
¢þ
>WENV180145762
OAUD01000005
[OAUD] human gut metagenome; faeces
110767
110681
-
Leu
TAA
[ENA]
¢þ
>WENV180145761
OAUD01000005
[OAUD] human gut metagenome; faeces
110853
110780
-
Cys
GCA
[ENA]
¢þ
>WENV180145760
OAUD01000005
[OAUD] human gut metagenome; faeces
110983
110908
-
Gly
GCC
[ENA]
¢þ
>WENV180145759
OAUD01000004
[OAUD] human gut metagenome; faeces
114295
114208
-
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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