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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OAUI] human gut metagenome; faeces
HIT:
135 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180148091
OAUI01008430
[OAUI] human gut metagenome; faeces
1
77
+
Asp
GTC
[ENA]
¢þ
>WENV180148087
OAUI01005306
[OAUI] human gut metagenome; faeces
36
109
+
Ala
TGC
[ENA]
¢þ
>WENV180148082
OAUI01004332
[OAUI] human gut metagenome; faeces
55
128
+
Trp
CCA
[ENA]
¢þ
>WENV180148078
OAUI01003903
[OAUI] human gut metagenome; faeces
64
139
+
Thr
TGT
[ENA]
¢þ
>WENV180148092
OAUI01008432
[OAUI] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180148090
OAUI01008397
[OAUI] human gut metagenome; faeces
78
152
+
Asn
GTT
[ENA]
¢þ
>WENV180148089
OAUI01008389
[OAUI] human gut metagenome; faeces
82
6
-
Asp
GTC
[ENA]
¢þ
>WENV180148088
OAUI01006533
[OAUI] human gut metagenome; faeces
84
157
+
Lys
TTT
[ENA]
¢þ
>WENV180148065
OAUI01001737
[OAUI] human gut metagenome; faeces
98
181
+
Leu
TAG
[ENA]
¢þ
>WENV180147981
OAUI01000018
[OAUI] human gut metagenome; faeces
102
178
+
Asp
GTC
[ENA]
¢þ
>WENV180148071
OAUI01002416
[OAUI] human gut metagenome; faeces
109
26
-
Tyr
GTA
[ENA]
¢þ
>WENV180148047
OAUI01000459
[OAUI] human gut metagenome; faeces
122
198
+
Arg
TCT
[ENA]
¢þ
>WENV180148053
OAUI01000649
[OAUI] human gut metagenome; faeces
123
51
-
Arg
CCT
[ENA]
¢þ
>WENV180148068
OAUI01001996
[OAUI] human gut metagenome; faeces
130
56
-
Asp
GTC
[ENA]
¢þ
>WENV180148057
OAUI01000792
[OAUI] human gut metagenome; faeces
148
72
-
Ile
GAT
[ENA]
¢þ
>WENV180148079
OAUI01003903
[OAUI] human gut metagenome; faeces
157
240
+
Tyr
GTA
[ENA]
¢þ
>WENV180148063
OAUI01001118
[OAUI] human gut metagenome; faeces
171
243
+
Thr
GGT
[ENA]
¢þ
>WENV180148062
OAUI01000999
[OAUI] human gut metagenome; faeces
179
89
-
Ser
TGA
[ENA]
¢þ
>WENV180147982
OAUI01000018
[OAUI] human gut metagenome; faeces
187
262
+
Trp
CCA
[ENA]
¢þ
>WENV180148084
OAUI01004339
[OAUI] human gut metagenome; faeces
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180148086
OAUI01004988
[OAUI] human gut metagenome; faeces
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180148049
OAUI01000485
[OAUI] human gut metagenome; faeces
206
277
+
Gln
TTG
[ENA]
¢þ
>WENV180148077
OAUI01003696
[OAUI] human gut metagenome; faeces
235
162
-
fMet
CAT
[ENA]
¢þ
>WENV180148064
OAUI01001188
[OAUI] human gut metagenome; faeces
241
156
-
Ser
TGA
[ENA]
¢þ
>WENV180148085
OAUI01004631
[OAUI] human gut metagenome; faeces
243
318
+
Asp
GTC
[ENA]
¢þ
>WENV180147996
OAUI01000026
[OAUI] human gut metagenome; faeces
244
168
-
Pro
CGG
[ENA]
¢þ
>WENV180148080
OAUI01003903
[OAUI] human gut metagenome; faeces
249
324
+
Gln
TTG
[ENA]
¢þ
>WENV180148076
OAUI01003629
[OAUI] human gut metagenome; faeces
262
190
-
Glu
TTC
[ENA]
¢þ
>WENV180148061
OAUI01000999
[OAUI] human gut metagenome; faeces
274
198
-
Ile2
CAT
[ENA]
¢þ
>WENV180148083
OAUI01004339
[OAUI] human gut metagenome; faeces
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180148075
OAUI01003629
[OAUI] human gut metagenome; faeces
338
267
-
Gln
TTG
[ENA]
¢þ
>WENV180148081
OAUI01003903
[OAUI] human gut metagenome; faeces
345
420
+
Lys
TTT
[ENA]
¢þ
>WENV180148060
OAUI01000999
[OAUI] human gut metagenome; faeces
363
287
-
Met
CAT
[ENA]
¢þ
>WENV180148074
OAUI01003629
[OAUI] human gut metagenome; faeces
416
343
-
Trp
CCA
[ENA]
¢þ
>WENV180148059
OAUI01000999
[OAUI] human gut metagenome; faeces
458
382
-
Pro
TGG
[ENA]
¢þ
>WENV180148073
OAUI01003629
[OAUI] human gut metagenome; faeces
496
423
-
Asn
GTT
[ENA]
¢þ
>WENV180148072
OAUI01003453
[OAUI] human gut metagenome; faeces
519
448
-
Gln
CTG
[ENA]
¢þ
>WENV180148058
OAUI01000999
[OAUI] human gut metagenome; faeces
542
466
-
Arg
ACG
[ENA]
¢þ
>WENV180148042
OAUI01000381
[OAUI] human gut metagenome; faeces
603
676
+
Cys
GCA
[ENA]
¢þ
>WENV180148070
OAUI01002373
[OAUI] human gut metagenome; faeces
680
607
-
Thr
CGT
[ENA]
¢þ
>WENV180148043
OAUI01000381
[OAUI] human gut metagenome; faeces
685
772
+
Leu
TAA
[ENA]
¢þ
>WENV180148034
OAUI01000239
[OAUI] human gut metagenome; faeces
717
641
-
Pro
CGG
[ENA]
¢þ
>WENV180148067
OAUI01001896
[OAUI] human gut metagenome; faeces
737
665
-
Arg
CCG
[ENA]
¢þ
>WENV180148069
OAUI01002086
[OAUI] human gut metagenome; faeces
738
813
+
Val
TAC
[ENA]
¢þ
>WENV180148066
OAUI01001768
[OAUI] human gut metagenome; faeces
777
692
-
Leu
CAG
[ENA]
¢þ
>WENV180148044
OAUI01000387
[OAUI] human gut metagenome; faeces
844
930
+
Leu
CAA
[ENA]
¢þ
>WENV180148050
OAUI01000547
[OAUI] human gut metagenome; faeces
899
826
-
Thr
GGT
[ENA]
¢þ
>WENV180148051
OAUI01000637
[OAUI] human gut metagenome; faeces
948
1024
+
Ile
GAT
[ENA]
¢þ
>WENV180148052
OAUI01000637
[OAUI] human gut metagenome; faeces
1043
1118
+
Ala
TGC
[ENA]
¢þ
>WENV180148055
OAUI01000652
[OAUI] human gut metagenome; faeces
1218
1305
+
Ser
GGA
[ENA]
¢þ
>WENV180148048
OAUI01000465
[OAUI] human gut metagenome; faeces
1236
1311
+
His
GTG
[ENA]
¢þ
>WENV180148046
OAUI01000458
[OAUI] human gut metagenome; faeces
1335
1261
-
Thr
CGT
[ENA]
¢þ
>WENV180148056
OAUI01000761
[OAUI] human gut metagenome; faeces
1407
1492
+
Leu
GAG
[ENA]
¢þ
>WENV180148041
OAUI01000366
[OAUI] human gut metagenome; faeces
2114
2189
+
Lys
CTT
[ENA]
¢þ
>WENV180148031
OAUI01000206
[OAUI] human gut metagenome; faeces
2160
2085
-
Glu
TTC
[ENA]
¢þ
>WENV180148054
OAUI01000650
[OAUI] human gut metagenome; faeces
2657
2581
-
Asp
GTC
[ENA]
¢þ
>WENV180148036
OAUI01000259
[OAUI] human gut metagenome; faeces
3054
3129
+
Asn
GTT
[ENA]
¢þ
>WENV180148033
OAUI01000238
[OAUI] human gut metagenome; faeces
3126
3052
-
Ala
TGC
[ENA]
¢þ
>WENV180148032
OAUI01000238
[OAUI] human gut metagenome; faeces
3217
3143
-
Ile
GAT
[ENA]
¢þ
>WENV180148045
OAUI01000425
[OAUI] human gut metagenome; faeces
3388
3464
+
Arg
CCT
[ENA]
¢þ
>WENV180148037
OAUI01000365
[OAUI] human gut metagenome; faeces
3515
3590
+
Thr
TGT
[ENA]
¢þ
>WENV180148019
OAUI01000052
[OAUI] human gut metagenome; faeces
3517
3604
+
Ser
TGA
[ENA]
¢þ
>WENV180148038
OAUI01000365
[OAUI] human gut metagenome; faeces
3599
3683
+
Tyr
GTA
[ENA]
¢þ
>WENV180148039
OAUI01000365
[OAUI] human gut metagenome; faeces
3800
3874
+
Gly
TCC
[ENA]
¢þ
>WENV180148040
OAUI01000365
[OAUI] human gut metagenome; faeces
3881
3956
+
Thr
GGT
[ENA]
¢þ
>WENV180148028
OAUI01000146
[OAUI] human gut metagenome; faeces
4344
4268
-
Arg
CCG
[ENA]
¢þ
>WENV180148026
OAUI01000141
[OAUI] human gut metagenome; faeces
4428
4355
-
Gly
TCC
[ENA]
¢þ
>WENV180148030
OAUI01000171
[OAUI] human gut metagenome; faeces
4768
4856
+
Ser
CGA
[ENA]
¢þ
>WENV180148035
OAUI01000241
[OAUI] human gut metagenome; faeces
4838
4913
+
Val
TAC
[ENA]
¢þ
>WENV180148025
OAUI01000103
[OAUI] human gut metagenome; faeces
7778
7688
-
Ser
GCT
[ENA]
¢þ
>WENV180148020
OAUI01000055
[OAUI] human gut metagenome; faeces
8129
8216
+
Ser
GGA
[ENA]
¢þ
>WENV180148029
OAUI01000158
[OAUI] human gut metagenome; faeces
8649
8724
+
Ala
TGC
[ENA]
¢þ
>WENV180148027
OAUI01000145
[OAUI] human gut metagenome; faeces
8666
8739
+
Trp
CCA
[ENA]
¢þ
>WENV180148013
OAUI01000043
[OAUI] human gut metagenome; faeces
9263
9189
-
Gln
CTG
[ENA]
¢þ
>WENV180147997
OAUI01000029
[OAUI] human gut metagenome; faeces
9312
9237
-
Thr
CGT
[ENA]
¢þ
>WENV180148012
OAUI01000043
[OAUI] human gut metagenome; faeces
9375
9301
-
Gln
CTG
[ENA]
¢þ
>WENV180148011
OAUI01000043
[OAUI] human gut metagenome; faeces
9500
9424
-
Met
CAT
[ENA]
¢þ
>WENV180147987
OAUI01000019
[OAUI] human gut metagenome; faeces
9525
9612
+
Ser
GGA
[ENA]
¢þ
>WENV180148010
OAUI01000043
[OAUI] human gut metagenome; faeces
9590
9516
-
Gln
TTG
[ENA]
¢þ
>WENV180148009
OAUI01000043
[OAUI] human gut metagenome; faeces
9699
9625
-
Gln
TTG
[ENA]
¢þ
>WENV180148008
OAUI01000043
[OAUI] human gut metagenome; faeces
9807
9723
-
Leu
TAG
[ENA]
¢þ
>WENV180148007
OAUI01000043
[OAUI] human gut metagenome; faeces
9893
9817
-
Met
CAT
[ENA]
¢þ
>WENV180148023
OAUI01000061
[OAUI] human gut metagenome; faeces
9904
9829
-
Asn
GTT
[ENA]
¢þ
>WENV180148021
OAUI01000061
[OAUI] human gut metagenome; faeces
11653
11728
+
Asn
GTT
[ENA]
¢þ
>WENV180148024
OAUI01000085
[OAUI] human gut metagenome; faeces
13175
13100
-
Gln
CTG
[ENA]
¢þ
>WENV180148022
OAUI01000061
[OAUI] human gut metagenome; faeces
14061
14136
+
Asn
GTT
[ENA]
¢þ
>WENV180148005
OAUI01000036
[OAUI] human gut metagenome; faeces
16012
15937
-
Phe
GAA
[ENA]
¢þ
>WENV180147995
OAUI01000025
[OAUI] human gut metagenome; faeces
16585
16491
-
SeC
TCA
[ENA]
¢þ
>WENV180147993
OAUI01000023
[OAUI] human gut metagenome; faeces
17486
17400
-
Leu
TAA
[ENA]
¢þ
>WENV180147992
OAUI01000023
[OAUI] human gut metagenome; faeces
17572
17499
-
Cys
GCA
[ENA]
¢þ
>WENV180147991
OAUI01000023
[OAUI] human gut metagenome; faeces
17702
17627
-
Gly
GCC
[ENA]
¢þ
>WENV180148006
OAUI01000037
[OAUI] human gut metagenome; faeces
21448
21372
-
Arg
TCT
[ENA]
¢þ
>WENV180148018
OAUI01000049
[OAUI] human gut metagenome; faeces
24521
24446
-
Lys
TTT
[ENA]
¢þ
>WENV180148017
OAUI01000049
[OAUI] human gut metagenome; faeces
24630
24555
-
Lys
TTT
[ENA]
¢þ
>WENV180148016
OAUI01000049
[OAUI] human gut metagenome; faeces
24852
24777
-
Lys
TTT
[ENA]
¢þ
>WENV180148015
OAUI01000049
[OAUI] human gut metagenome; faeces
24932
24857
-
Val
TAC
[ENA]
¢þ
>WENV180148014
OAUI01000049
[OAUI] human gut metagenome; faeces
25143
25068
-
Lys
TTT
[ENA]
¢þ
>WENV180147972
OAUI01000010
[OAUI] human gut metagenome; faeces
25361
25285
-
fMet
CAT
[ENA]
¢þ
>WENV180147971
OAUI01000010
[OAUI] human gut metagenome; faeces
29230
29144
-
Leu
GAG
[ENA]
¢þ
>WENV180148001
OAUI01000031
[OAUI] human gut metagenome; faeces
33747
33671
-
Arg
ACG
[ENA]
¢þ
>WENV180148000
OAUI01000031
[OAUI] human gut metagenome; faeces
34022
33946
-
Arg
ACG
[ENA]
¢þ
>WENV180147999
OAUI01000031
[OAUI] human gut metagenome; faeces
34118
34026
-
Ser
GCT
[ENA]
¢þ
>WENV180147983
OAUI01000018
[OAUI] human gut metagenome; faeces
34731
34807
+
Arg
CCG
[ENA]
¢þ
>WENV180147984
OAUI01000018
[OAUI] human gut metagenome; faeces
34866
34941
+
His
GTG
[ENA]
¢þ
>WENV180147985
OAUI01000018
[OAUI] human gut metagenome; faeces
34962
35048
+
Leu
CAG
[ENA]
¢þ
>WENV180147986
OAUI01000018
[OAUI] human gut metagenome; faeces
35091
35167
+
Pro
TGG
[ENA]
¢þ
>WENV180148002
OAUI01000036
[OAUI] human gut metagenome; faeces
44866
44941
+
Gly
GCC
[ENA]
¢þ
>WENV180148003
OAUI01000036
[OAUI] human gut metagenome; faeces
45099
45174
+
Gly
GCC
[ENA]
¢þ
>WENV180148004
OAUI01000036
[OAUI] human gut metagenome; faeces
45210
45285
+
Gly
GCC
[ENA]
¢þ
>WENV180147967
OAUI01000004
[OAUI] human gut metagenome; faeces
51652
51566
-
Leu
CAG
[ENA]
¢þ
>WENV180147966
OAUI01000004
[OAUI] human gut metagenome; faeces
51773
51687
-
Leu
CAG
[ENA]
¢þ
>WENV180147965
OAUI01000004
[OAUI] human gut metagenome; faeces
51888
51802
-
Leu
CAG
[ENA]
¢þ
>WENV180147998
OAUI01000030
[OAUI] human gut metagenome; faeces
55853
55929
+
Arg
TCT
[ENA]
¢þ
>WENV180147988
OAUI01000021
[OAUI] human gut metagenome; faeces
61396
61472
+
Pro
GGG
[ENA]
¢þ
>WENV180147990
OAUI01000023
[OAUI] human gut metagenome; faeces
68513
68424
-
Ser
CGA
[ENA]
¢þ
>WENV180147989
OAUI01000023
[OAUI] human gut metagenome; faeces
69505
69580
+
Asn
GTT
[ENA]
¢þ
>WENV180147994
OAUI01000024
[OAUI] human gut metagenome; faeces
69581
69665
+
Leu
CAA
[ENA]
¢þ
>WENV180147969
OAUI01000009
[OAUI] human gut metagenome; faeces
78520
78595
+
Ile2
CAT
[ENA]
¢þ
>WENV180147980
OAUI01000012
[OAUI] human gut metagenome; faeces
91989
91905
-
Tyr
GTA
[ENA]
¢þ
>WENV180147979
OAUI01000012
[OAUI] human gut metagenome; faeces
92108
92024
-
Tyr
GTA
[ENA]
¢þ
>WENV180147978
OAUI01000011
[OAUI] human gut metagenome; faeces
97793
97718
-
Lys
TTT
[ENA]
¢þ
>WENV180147977
OAUI01000011
[OAUI] human gut metagenome; faeces
97873
97798
-
Val
TAC
[ENA]
¢þ
>WENV180147976
OAUI01000011
[OAUI] human gut metagenome; faeces
97995
97920
-
Val
TAC
[ENA]
¢þ
>WENV180147975
OAUI01000011
[OAUI] human gut metagenome; faeces
98117
98042
-
Val
TAC
[ENA]
¢þ
>WENV180147968
OAUI01000007
[OAUI] human gut metagenome; faeces
100156
100230
+
Arg
CCT
[ENA]
¢þ
>WENV180147973
OAUI01000011
[OAUI] human gut metagenome; faeces
100816
100891
+
Ala
GGC
[ENA]
¢þ
>WENV180147974
OAUI01000011
[OAUI] human gut metagenome; faeces
100931
101006
+
Ala
GGC
[ENA]
¢þ
>WENV180147960
OAUI01000002
[OAUI] human gut metagenome; faeces
107660
107736
+
fMet
CAT
[ENA]
¢þ
>WENV180147961
OAUI01000002
[OAUI] human gut metagenome; faeces
107770
107846
+
fMet
CAT
[ENA]
¢þ
>WENV180147962
OAUI01000002
[OAUI] human gut metagenome; faeces
107880
107956
+
fMet
CAT
[ENA]
¢þ
>WENV180147970
OAUI01000010
[OAUI] human gut metagenome; faeces
123775
123700
-
Thr
GGT
[ENA]
¢þ
>WENV180147964
OAUI01000002
[OAUI] human gut metagenome; faeces
175269
175196
-
Gly
CCC
[ENA]
¢þ
>WENV180147959
OAUI01000001
[OAUI] human gut metagenome; faeces
226643
226567
-
Val
GAC
[ENA]
¢þ
>WENV180147958
OAUI01000001
[OAUI] human gut metagenome; faeces
226724
226648
-
Val
GAC
[ENA]
¢þ
>WENV180147963
OAUI01000002
[OAUI] human gut metagenome; faeces
299575
299650
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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