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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OAVN] human gut metagenome; faeces
HIT:
102 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180166541
OAVN01000029
[OAVN] human gut metagenome; faeces
8
93
+
Leu
CAG
[ENA]
¢þ
>WENV180166571
OAVN01001405
[OAVN] human gut metagenome; faeces
15
89
+
Thr
AGT
[ENA]
¢þ
>WENV180166553
OAVN01000137
[OAVN] human gut metagenome; faeces
18
93
+
Asn
GTT
[ENA]
¢þ
>WENV180166581
OAVN01003440
[OAVN] human gut metagenome; faeces
30
106
+
Asp
GTC
[ENA]
¢þ
>WENV180166547
OAVN01000061
[OAVN] human gut metagenome; faeces
58
133
+
Thr
GGT
[ENA]
¢þ
>WENV180166568
OAVN01000381
[OAVN] human gut metagenome; faeces
100
175
+
Trp
CCA
[ENA]
¢þ
>WENV180166572
OAVN01001405
[OAVN] human gut metagenome; faeces
113
184
+
Gly
GCC
[ENA]
¢þ
>WENV180166570
OAVN01000550
[OAVN] human gut metagenome; faeces
121
47
-
Asn
GTT
[ENA]
¢þ
>WENV180166576
OAVN01001581
[OAVN] human gut metagenome; faeces
131
206
+
Glu
TTC
[ENA]
¢þ
>WENV180166577
OAVN01001786
[OAVN] human gut metagenome; faeces
135
211
+
Ile
GAT
[ENA]
¢þ
>WENV180166580
OAVN01002071
[OAVN] human gut metagenome; faeces
177
102
-
Ala
TGC
[ENA]
¢þ
>WENV180166562
OAVN01000258
[OAVN] human gut metagenome; faeces
192
267
+
Gly
GCC
[ENA]
¢þ
>WENV180166573
OAVN01001405
[OAVN] human gut metagenome; faeces
199
286
+
Leu
TAA
[ENA]
¢þ
>WENV180166578
OAVN01001786
[OAVN] human gut metagenome; faeces
251
325
+
Ala
TGC
[ENA]
¢þ
>WENV180166579
OAVN01002071
[OAVN] human gut metagenome; faeces
296
220
-
Ile
GAT
[ENA]
¢þ
>WENV180166574
OAVN01001405
[OAVN] human gut metagenome; faeces
296
369
+
Arg
ACG
[ENA]
¢þ
>WENV180166575
OAVN01001405
[OAVN] human gut metagenome; faeces
376
452
+
Pro
TGG
[ENA]
¢þ
>WENV180166567
OAVN01000333
[OAVN] human gut metagenome; faeces
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV180166566
OAVN01000333
[OAVN] human gut metagenome; faeces
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180166565
OAVN01000333
[OAVN] human gut metagenome; faeces
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180166564
OAVN01000333
[OAVN] human gut metagenome; faeces
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180166539
OAVN01000021
[OAVN] human gut metagenome; faeces
1388
1301
-
Ser
GGA
[ENA]
¢þ
>WENV180166563
OAVN01000331
[OAVN] human gut metagenome; faeces
1654
1578
-
Asp
GTC
[ENA]
¢þ
>WENV180166560
OAVN01000236
[OAVN] human gut metagenome; faeces
1986
1900
-
Leu
GAG
[ENA]
¢þ
>WENV180166569
OAVN01000427
[OAVN] human gut metagenome; faeces
2168
2093
-
Thr
CGT
[ENA]
¢þ
>WENV180166557
OAVN01000166
[OAVN] human gut metagenome; faeces
2685
2772
+
Ser
TGA
[ENA]
¢þ
>WENV180166555
OAVN01000158
[OAVN] human gut metagenome; faeces
3193
3266
+
Gly
CCC
[ENA]
¢þ
>WENV180166561
OAVN01000246
[OAVN] human gut metagenome; faeces
3374
3290
-
Leu
CAA
[ENA]
¢þ
>WENV180166558
OAVN01000195
[OAVN] human gut metagenome; faeces
3498
3422
-
Asp
GTC
[ENA]
¢þ
>WENV180166552
OAVN01000133
[OAVN] human gut metagenome; faeces
4664
4588
-
Pro
CGG
[ENA]
¢þ
>WENV180166559
OAVN01000200
[OAVN] human gut metagenome; faeces
9301
9225
-
Arg
TCT
[ENA]
¢þ
>WENV180166484
OAVN01000001
[OAVN] human gut metagenome; faeces
9986
9902
-
Leu
CAA
[ENA]
¢þ
>WENV180166554
OAVN01000148
[OAVN] human gut metagenome; faeces
10418
10343
-
Phe
GAA
[ENA]
¢þ
>WENV180166556
OAVN01000162
[OAVN] human gut metagenome; faeces
11978
11902
-
Arg
TCT
[ENA]
¢þ
>WENV180166551
OAVN01000109
[OAVN] human gut metagenome; faeces
13123
13047
-
Arg
TCT
[ENA]
¢þ
>WENV180166550
OAVN01000106
[OAVN] human gut metagenome; faeces
16447
16372
-
Ile2
CAT
[ENA]
¢þ
>WENV180166529
OAVN01000015
[OAVN] human gut metagenome; faeces
18435
18362
-
Gly
CCC
[ENA]
¢þ
>WENV180166546
OAVN01000050
[OAVN] human gut metagenome; faeces
20495
20420
-
Asn
GTT
[ENA]
¢þ
>WENV180166549
OAVN01000086
[OAVN] human gut metagenome; faeces
21322
21248
-
Arg
CCT
[ENA]
¢þ
>WENV180166545
OAVN01000050
[OAVN] human gut metagenome; faeces
22904
22829
-
Asn
GTT
[ENA]
¢þ
>WENV180166522
OAVN01000014
[OAVN] human gut metagenome; faeces
23584
23660
+
Met
CAT
[ENA]
¢þ
>WENV180166523
OAVN01000014
[OAVN] human gut metagenome; faeces
23671
23755
+
Leu
TAG
[ENA]
¢þ
>WENV180166524
OAVN01000014
[OAVN] human gut metagenome; faeces
23779
23853
+
Gln
TTG
[ENA]
¢þ
>WENV180166525
OAVN01000014
[OAVN] human gut metagenome; faeces
23888
23962
+
Gln
TTG
[ENA]
¢þ
>WENV180166526
OAVN01000014
[OAVN] human gut metagenome; faeces
23978
24054
+
Met
CAT
[ENA]
¢þ
>WENV180166527
OAVN01000014
[OAVN] human gut metagenome; faeces
24103
24177
+
Gln
CTG
[ENA]
¢þ
>WENV180166528
OAVN01000014
[OAVN] human gut metagenome; faeces
24215
24289
+
Gln
CTG
[ENA]
¢þ
>WENV180166544
OAVN01000050
[OAVN] human gut metagenome; faeces
24653
24728
+
Asn
GTT
[ENA]
¢þ
>WENV180166548
OAVN01000072
[OAVN] human gut metagenome; faeces
30002
30076
+
Gly
TCC
[ENA]
¢þ
>WENV180166504
OAVN01000005
[OAVN] human gut metagenome; faeces
31124
31048
-
Arg
ACG
[ENA]
¢þ
>WENV180166503
OAVN01000005
[OAVN] human gut metagenome; faeces
31264
31188
-
Arg
ACG
[ENA]
¢þ
>WENV180166502
OAVN01000005
[OAVN] human gut metagenome; faeces
31404
31328
-
Arg
ACG
[ENA]
¢þ
>WENV180166501
OAVN01000005
[OAVN] human gut metagenome; faeces
31500
31408
-
Ser
GCT
[ENA]
¢þ
>WENV180166540
OAVN01000022
[OAVN] human gut metagenome; faeces
41107
41031
-
Pro
CGG
[ENA]
¢þ
>WENV180166543
OAVN01000037
[OAVN] human gut metagenome; faeces
46094
46019
-
Asn
GTT
[ENA]
¢þ
>WENV180166542
OAVN01000037
[OAVN] human gut metagenome; faeces
47085
47174
+
Ser
CGA
[ENA]
¢þ
>WENV180166505
OAVN01000006
[OAVN] human gut metagenome; faeces
49239
49314
+
Lys
TTT
[ENA]
¢þ
>WENV180166506
OAVN01000006
[OAVN] human gut metagenome; faeces
49350
49425
+
Val
TAC
[ENA]
¢þ
>WENV180166507
OAVN01000006
[OAVN] human gut metagenome; faeces
49430
49505
+
Lys
TTT
[ENA]
¢þ
>WENV180166508
OAVN01000006
[OAVN] human gut metagenome; faeces
49557
49632
+
Val
TAC
[ENA]
¢þ
>WENV180166509
OAVN01000006
[OAVN] human gut metagenome; faeces
49637
49712
+
Lys
TTT
[ENA]
¢þ
>WENV180166510
OAVN01000006
[OAVN] human gut metagenome; faeces
49761
49836
+
Lys
TTT
[ENA]
¢þ
>WENV180166511
OAVN01000006
[OAVN] human gut metagenome; faeces
49870
49945
+
Lys
TTT
[ENA]
¢þ
>WENV180166519
OAVN01000011
[OAVN] human gut metagenome; faeces
51073
51159
+
Leu
GAG
[ENA]
¢þ
>WENV180166520
OAVN01000011
[OAVN] human gut metagenome; faeces
54940
55016
+
fMet
CAT
[ENA]
¢þ
>WENV180166538
OAVN01000020
[OAVN] human gut metagenome; faeces
64715
64639
-
Val
GAC
[ENA]
¢þ
>WENV180166537
OAVN01000020
[OAVN] human gut metagenome; faeces
64796
64720
-
Val
GAC
[ENA]
¢þ
>WENV180166530
OAVN01000016
[OAVN] human gut metagenome; faeces
66237
66331
+
SeC
TCA
[ENA]
¢þ
>WENV180166535
OAVN01000018
[OAVN] human gut metagenome; faeces
72456
72380
-
Pro
TGG
[ENA]
¢þ
>WENV180166534
OAVN01000018
[OAVN] human gut metagenome; faeces
72585
72499
-
Leu
CAG
[ENA]
¢þ
>WENV180166533
OAVN01000018
[OAVN] human gut metagenome; faeces
72681
72606
-
His
GTG
[ENA]
¢þ
>WENV180166532
OAVN01000018
[OAVN] human gut metagenome; faeces
72816
72740
-
Arg
CCG
[ENA]
¢þ
>WENV180166492
OAVN01000003
[OAVN] human gut metagenome; faeces
75826
75751
-
Lys
TTT
[ENA]
¢þ
>WENV180166491
OAVN01000003
[OAVN] human gut metagenome; faeces
75906
75831
-
Val
TAC
[ENA]
¢þ
>WENV180166490
OAVN01000003
[OAVN] human gut metagenome; faeces
76028
75953
-
Val
TAC
[ENA]
¢þ
>WENV180166489
OAVN01000003
[OAVN] human gut metagenome; faeces
76150
76075
-
Val
TAC
[ENA]
¢þ
>WENV180166486
OAVN01000003
[OAVN] human gut metagenome; faeces
78849
78924
+
Ala
GGC
[ENA]
¢þ
>WENV180166487
OAVN01000003
[OAVN] human gut metagenome; faeces
78964
79039
+
Ala
GGC
[ENA]
¢þ
>WENV180166536
OAVN01000019
[OAVN] human gut metagenome; faeces
85938
85851
-
Ser
TGA
[ENA]
¢þ
>WENV180166515
OAVN01000007
[OAVN] human gut metagenome; faeces
89760
89674
-
Leu
CAG
[ENA]
¢þ
>WENV180166514
OAVN01000007
[OAVN] human gut metagenome; faeces
89881
89795
-
Leu
CAG
[ENA]
¢þ
>WENV180166513
OAVN01000007
[OAVN] human gut metagenome; faeces
89996
89910
-
Leu
CAG
[ENA]
¢þ
>WENV180166531
OAVN01000018
[OAVN] human gut metagenome; faeces
112711
112636
-
Trp
CCA
[ENA]
¢þ
>WENV180166517
OAVN01000009
[OAVN] human gut metagenome; faeces
119672
119756
+
Tyr
GTA
[ENA]
¢þ
>WENV180166518
OAVN01000009
[OAVN] human gut metagenome; faeces
119790
119874
+
Tyr
GTA
[ENA]
¢þ
>WENV180166488
OAVN01000003
[OAVN] human gut metagenome; faeces
122377
122303
-
Arg
CCT
[ENA]
¢þ
>WENV180166483
OAVN01000001
[OAVN] human gut metagenome; faeces
126232
126157
-
Gly
GCC
[ENA]
¢þ
>WENV180166482
OAVN01000001
[OAVN] human gut metagenome; faeces
126345
126270
-
Gly
GCC
[ENA]
¢þ
>WENV180166481
OAVN01000001
[OAVN] human gut metagenome; faeces
126458
126383
-
Gly
GCC
[ENA]
¢þ
>WENV180166480
OAVN01000001
[OAVN] human gut metagenome; faeces
155616
155691
+
Phe
GAA
[ENA]
¢þ
>WENV180166521
OAVN01000012
[OAVN] human gut metagenome; faeces
161248
161323
+
Ile2
CAT
[ENA]
¢þ
>WENV180166498
OAVN01000005
[OAVN] human gut metagenome; faeces
162484
162560
+
fMet
CAT
[ENA]
¢þ
>WENV180166499
OAVN01000005
[OAVN] human gut metagenome; faeces
162594
162670
+
fMet
CAT
[ENA]
¢þ
>WENV180166500
OAVN01000005
[OAVN] human gut metagenome; faeces
162704
162780
+
fMet
CAT
[ENA]
¢þ
>WENV180166497
OAVN01000004
[OAVN] human gut metagenome; faeces
168667
168581
-
Leu
TAA
[ENA]
¢þ
>WENV180166496
OAVN01000004
[OAVN] human gut metagenome; faeces
168753
168680
-
Cys
GCA
[ENA]
¢þ
>WENV180166495
OAVN01000004
[OAVN] human gut metagenome; faeces
168880
168805
-
Gly
GCC
[ENA]
¢þ
>WENV180166516
OAVN01000008
[OAVN] human gut metagenome; faeces
189181
189257
+
Pro
GGG
[ENA]
¢þ
>WENV180166512
OAVN01000006
[OAVN] human gut metagenome; faeces
201689
201602
-
Ser
GGA
[ENA]
¢þ
>WENV180166494
OAVN01000004
[OAVN] human gut metagenome; faeces
258755
258666
-
Ser
CGA
[ENA]
¢þ
>WENV180166493
OAVN01000004
[OAVN] human gut metagenome; faeces
259747
259822
+
Asn
GTT
[ENA]
¢þ
>WENV180166485
OAVN01000002
[OAVN] human gut metagenome; faeces
270020
269945
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK