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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OAWG] human gut metagenome; faeces
HIT:
89 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180178145
OAWG01000736
[OAWG] human gut metagenome; faeces
3
79
+
fMet
CAT
[ENA]
¢þ
>WENV180178146
OAWG01000737
[OAWG] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180178144
OAWG01000662
[OAWG] human gut metagenome; faeces
80
9
-
Gln
TTG
[ENA]
¢þ
>WENV180178140
OAWG01000322
[OAWG] human gut metagenome; faeces
80
156
+
Ile
GAT
[ENA]
¢þ
>WENV180178142
OAWG01000366
[OAWG] human gut metagenome; faeces
97
172
+
Glu
TTC
[ENA]
¢þ
>WENV180178138
OAWG01000200
[OAWG] human gut metagenome; faeces
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180178086
OAWG01000012
[OAWG] human gut metagenome; faeces
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180178143
OAWG01000662
[OAWG] human gut metagenome; faeces
164
91
-
His
GTG
[ENA]
¢þ
>WENV180178087
OAWG01000012
[OAWG] human gut metagenome; faeces
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180178141
OAWG01000322
[OAWG] human gut metagenome; faeces
199
274
+
Ala
TGC
[ENA]
¢þ
>WENV180178112
OAWG01000058
[OAWG] human gut metagenome; faeces
215
139
-
Pro
GGG
[ENA]
¢þ
>WENV180178139
OAWG01000223
[OAWG] human gut metagenome; faeces
481
558
+
Leu
TAA
[ENA]
¢þ
>WENV180178137
OAWG01000159
[OAWG] human gut metagenome; faeces
1041
965
-
Arg
TCT
[ENA]
¢þ
>WENV180178136
OAWG01000159
[OAWG] human gut metagenome; faeces
1131
1055
-
Arg
TCG
[ENA]
¢þ
>WENV180178135
OAWG01000159
[OAWG] human gut metagenome; faeces
1214
1139
-
Ile2
CAT
[ENA]
¢þ
>WENV180178085
OAWG01000010
[OAWG] human gut metagenome; faeces
1720
1645
-
Gly
GCC
[ENA]
¢þ
>WENV180178084
OAWG01000010
[OAWG] human gut metagenome; faeces
1832
1757
-
Gly
GCC
[ENA]
¢þ
>WENV180178124
OAWG01000122
[OAWG] human gut metagenome; faeces
1867
1791
-
Arg
TCT
[ENA]
¢þ
>WENV180178083
OAWG01000010
[OAWG] human gut metagenome; faeces
1944
1869
-
Gly
GCC
[ENA]
¢þ
>WENV180178131
OAWG01000152
[OAWG] human gut metagenome; faeces
2518
2593
+
Met
CAT
[ENA]
¢þ
>WENV180178130
OAWG01000145
[OAWG] human gut metagenome; faeces
2557
2482
-
Ala
GGC
[ENA]
¢þ
>WENV180178132
OAWG01000152
[OAWG] human gut metagenome; faeces
2601
2677
+
Arg
TCG
[ENA]
¢þ
>WENV180178129
OAWG01000145
[OAWG] human gut metagenome; faeces
2672
2597
-
Ala
GGC
[ENA]
¢þ
>WENV180178133
OAWG01000152
[OAWG] human gut metagenome; faeces
2691
2767
+
Arg
TCT
[ENA]
¢þ
>WENV180178134
OAWG01000158
[OAWG] human gut metagenome; faeces
2843
2918
+
Val
TAC
[ENA]
¢þ
>WENV180178119
OAWG01000077
[OAWG] human gut metagenome; faeces
3346
3262
-
Leu
CAA
[ENA]
¢þ
>WENV180178125
OAWG01000139
[OAWG] human gut metagenome; faeces
3526
3601
+
Thr
TGT
[ENA]
¢þ
>WENV180178126
OAWG01000139
[OAWG] human gut metagenome; faeces
3610
3694
+
Tyr
GTA
[ENA]
¢þ
>WENV180178127
OAWG01000139
[OAWG] human gut metagenome; faeces
3811
3885
+
Gly
TCC
[ENA]
¢þ
>WENV180178128
OAWG01000139
[OAWG] human gut metagenome; faeces
3892
3967
+
Thr
GGT
[ENA]
¢þ
>WENV180178123
OAWG01000117
[OAWG] human gut metagenome; faeces
4035
3959
-
Arg
TCT
[ENA]
¢þ
>WENV180178122
OAWG01000117
[OAWG] human gut metagenome; faeces
4125
4049
-
Arg
TCG
[ENA]
¢þ
>WENV180178121
OAWG01000117
[OAWG] human gut metagenome; faeces
4208
4133
-
Ile2
CAT
[ENA]
¢þ
>WENV180178103
OAWG01000028
[OAWG] human gut metagenome; faeces
4234
4159
-
Phe
GAA
[ENA]
¢þ
>WENV180178120
OAWG01000113
[OAWG] human gut metagenome; faeces
5520
5593
+
Gly
CCC
[ENA]
¢þ
>WENV180178104
OAWG01000030
[OAWG] human gut metagenome; faeces
6851
6935
+
Tyr
GTA
[ENA]
¢þ
>WENV180178079
OAWG01000005
[OAWG] human gut metagenome; faeces
6941
6866
-
Ile2
CAT
[ENA]
¢þ
>WENV180178105
OAWG01000030
[OAWG] human gut metagenome; faeces
6970
7054
+
Tyr
GTA
[ENA]
¢þ
>WENV180178094
OAWG01000016
[OAWG] human gut metagenome; faeces
7557
7633
+
Asp
GTC
[ENA]
¢þ
>WENV180178098
OAWG01000019
[OAWG] human gut metagenome; faeces
11825
11750
-
Ile2
CAT
[ENA]
¢þ
>WENV180178111
OAWG01000047
[OAWG] human gut metagenome; faeces
12233
12157
-
Pro
CGG
[ENA]
¢þ
>WENV180178116
OAWG01000063
[OAWG] human gut metagenome; faeces
16632
16545
-
Ser
GGA
[ENA]
¢þ
>WENV180178058
OAWG01000001
[OAWG] human gut metagenome; faeces
18911
18986
+
Gly
GCC
[ENA]
¢þ
>WENV180178080
OAWG01000006
[OAWG] human gut metagenome; faeces
19011
18924
-
Ser
GGA
[ENA]
¢þ
>WENV180178059
OAWG01000001
[OAWG] human gut metagenome; faeces
19041
19114
+
Cys
GCA
[ENA]
¢þ
>WENV180178060
OAWG01000001
[OAWG] human gut metagenome; faeces
19127
19213
+
Leu
TAA
[ENA]
¢þ
>WENV180178118
OAWG01000073
[OAWG] human gut metagenome; faeces
19555
19480
-
Asn
GTT
[ENA]
¢þ
>WENV180178115
OAWG01000060
[OAWG] human gut metagenome; faeces
20373
20298
-
Asn
GTT
[ENA]
¢þ
>WENV180178117
OAWG01000073
[OAWG] human gut metagenome; faeces
20547
20636
+
Ser
CGA
[ENA]
¢þ
>WENV180178113
OAWG01000060
[OAWG] human gut metagenome; faeces
22122
22197
+
Asn
GTT
[ENA]
¢þ
>WENV180178114
OAWG01000060
[OAWG] human gut metagenome; faeces
24531
24606
+
Asn
GTT
[ENA]
¢þ
>WENV180178074
OAWG01000003
[OAWG] human gut metagenome; faeces
28075
28001
-
Gln
CTG
[ENA]
¢þ
>WENV180178073
OAWG01000003
[OAWG] human gut metagenome; faeces
28187
28113
-
Gln
CTG
[ENA]
¢þ
>WENV180178072
OAWG01000003
[OAWG] human gut metagenome; faeces
28312
28236
-
Met
CAT
[ENA]
¢þ
>WENV180178071
OAWG01000003
[OAWG] human gut metagenome; faeces
28402
28328
-
Gln
TTG
[ENA]
¢þ
>WENV180178070
OAWG01000003
[OAWG] human gut metagenome; faeces
28511
28437
-
Gln
TTG
[ENA]
¢þ
>WENV180178069
OAWG01000003
[OAWG] human gut metagenome; faeces
28619
28535
-
Leu
TAG
[ENA]
¢þ
>WENV180178068
OAWG01000003
[OAWG] human gut metagenome; faeces
28704
28628
-
Met
CAT
[ENA]
¢þ
>WENV180178082
OAWG01000010
[OAWG] human gut metagenome; faeces
30807
30882
+
Phe
GAA
[ENA]
¢þ
>WENV180178110
OAWG01000046
[OAWG] human gut metagenome; faeces
32972
32898
-
Arg
CCT
[ENA]
¢þ
>WENV180178099
OAWG01000021
[OAWG] human gut metagenome; faeces
33032
32945
-
Ser
TGA
[ENA]
¢þ
>WENV180178088
OAWG01000012
[OAWG] human gut metagenome; faeces
35474
35550
+
Arg
CCG
[ENA]
¢þ
>WENV180178089
OAWG01000012
[OAWG] human gut metagenome; faeces
35609
35684
+
His
GTG
[ENA]
¢þ
>WENV180178090
OAWG01000012
[OAWG] human gut metagenome; faeces
35705
35791
+
Leu
CAG
[ENA]
¢þ
>WENV180178091
OAWG01000012
[OAWG] human gut metagenome; faeces
35834
35910
+
Pro
TGG
[ENA]
¢þ
>WENV180178109
OAWG01000037
[OAWG] human gut metagenome; faeces
38539
38464
-
Lys
TTT
[ENA]
¢þ
>WENV180178108
OAWG01000037
[OAWG] human gut metagenome; faeces
38619
38544
-
Val
TAC
[ENA]
¢þ
>WENV180178107
OAWG01000037
[OAWG] human gut metagenome; faeces
38741
38666
-
Val
TAC
[ENA]
¢þ
>WENV180178106
OAWG01000037
[OAWG] human gut metagenome; faeces
38863
38788
-
Val
TAC
[ENA]
¢þ
>WENV180178078
OAWG01000005
[OAWG] human gut metagenome; faeces
40818
40742
-
Arg
ACG
[ENA]
¢þ
>WENV180178077
OAWG01000005
[OAWG] human gut metagenome; faeces
40959
40883
-
Arg
ACG
[ENA]
¢þ
>WENV180178076
OAWG01000005
[OAWG] human gut metagenome; faeces
41100
41024
-
Arg
ACG
[ENA]
¢þ
>WENV180178075
OAWG01000005
[OAWG] human gut metagenome; faeces
41196
41104
-
Ser
GCT
[ENA]
¢þ
>WENV180178100
OAWG01000023
[OAWG] human gut metagenome; faeces
44653
44739
+
Leu
CAG
[ENA]
¢þ
>WENV180178101
OAWG01000023
[OAWG] human gut metagenome; faeces
44774
44860
+
Leu
CAG
[ENA]
¢þ
>WENV180178102
OAWG01000023
[OAWG] human gut metagenome; faeces
44895
44981
+
Leu
CAG
[ENA]
¢þ
>WENV180178096
OAWG01000017
[OAWG] human gut metagenome; faeces
46706
46792
+
Leu
GAG
[ENA]
¢þ
>WENV180178097
OAWG01000017
[OAWG] human gut metagenome; faeces
50575
50651
+
fMet
CAT
[ENA]
¢þ
>WENV180178092
OAWG01000015
[OAWG] human gut metagenome; faeces
53230
53306
+
Val
GAC
[ENA]
¢þ
>WENV180178093
OAWG01000015
[OAWG] human gut metagenome; faeces
53311
53387
+
Val
GAC
[ENA]
¢þ
>WENV180178081
OAWG01000009
[OAWG] human gut metagenome; faeces
65918
66012
+
SeC
TCA
[ENA]
¢þ
>WENV180178095
OAWG01000016
[OAWG] human gut metagenome; faeces
66797
66872
+
Thr
CGT
[ENA]
¢þ
>WENV180178061
OAWG01000003
[OAWG] human gut metagenome; faeces
106227
106302
+
Lys
TTT
[ENA]
¢þ
>WENV180178062
OAWG01000003
[OAWG] human gut metagenome; faeces
106438
106513
+
Val
TAC
[ENA]
¢þ
>WENV180178063
OAWG01000003
[OAWG] human gut metagenome; faeces
106518
106593
+
Lys
TTT
[ENA]
¢þ
>WENV180178064
OAWG01000003
[OAWG] human gut metagenome; faeces
106645
106720
+
Val
TAC
[ENA]
¢þ
>WENV180178065
OAWG01000003
[OAWG] human gut metagenome; faeces
106725
106800
+
Lys
TTT
[ENA]
¢þ
>WENV180178066
OAWG01000003
[OAWG] human gut metagenome; faeces
106849
106924
+
Lys
TTT
[ENA]
¢þ
>WENV180178067
OAWG01000003
[OAWG] human gut metagenome; faeces
106958
107033
+
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK