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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OAZV] human gut metagenome; faeces
HIT:
93 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180192842
OAZV01000110
[OAZV] human gut metagenome; faeces
10
94
+
Tyr
GTA
[ENA]
¢þ
>WENV180192822
OAZV01000030
[OAZV] human gut metagenome; faeces
35
111
+
Asp
GTC
[ENA]
¢þ
>WENV180192858
OAZV01005238
[OAZV] human gut metagenome; faeces
64
146
+
Leu
CAG
[ENA]
¢þ
>WENV180192803
OAZV01000023
[OAZV] human gut metagenome; faeces
75
1
-
Arg
CCT
[ENA]
¢þ
>WENV180192862
OAZV01005873
[OAZV] human gut metagenome; faeces
77
1
-
Asp
GTC
[ENA]
¢þ
>WENV180192841
OAZV01000103
[OAZV] human gut metagenome; faeces
78
3
-
Thr
CGT
[ENA]
¢þ
>WENV180192804
OAZV01000025
[OAZV] human gut metagenome; faeces
88
1
-
Ser
GGA
[ENA]
¢þ
>WENV180192861
OAZV01005857
[OAZV] human gut metagenome; faeces
88
1
-
Ser
GGA
[ENA]
¢þ
>WENV180192860
OAZV01005816
[OAZV] human gut metagenome; faeces
88
2
-
Leu
CAG
[ENA]
¢þ
>WENV180192850
OAZV01000440
[OAZV] human gut metagenome; faeces
107
34
-
Trp
CCA
[ENA]
¢þ
>WENV180192823
OAZV01000030
[OAZV] human gut metagenome; faeces
120
195
+
Trp
CCA
[ENA]
¢þ
>WENV180192856
OAZV01002915
[OAZV] human gut metagenome; faeces
128
45
-
Tyr
GTA
[ENA]
¢þ
>WENV180192859
OAZV01005815
[OAZV] human gut metagenome; faeces
177
102
-
Val
TAC
[ENA]
¢þ
>WENV180192853
OAZV01002201
[OAZV] human gut metagenome; faeces
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180192854
OAZV01002820
[OAZV] human gut metagenome; faeces
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180192857
OAZV01004648
[OAZV] human gut metagenome; faeces
214
140
-
Pro
CGG
[ENA]
¢þ
>WENV180192855
OAZV01002915
[OAZV] human gut metagenome; faeces
245
171
-
Thr
TGT
[ENA]
¢þ
>WENV180192852
OAZV01002201
[OAZV] human gut metagenome; faeces
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180192851
OAZV01000748
[OAZV] human gut metagenome; faeces
346
417
+
Gln
TTG
[ENA]
¢þ
>WENV180192848
OAZV01000170
[OAZV] human gut metagenome; faeces
583
507
-
Arg
TCT
[ENA]
¢þ
>WENV180192849
OAZV01000437
[OAZV] human gut metagenome; faeces
637
560
-
Leu
TAA
[ENA]
¢þ
>WENV180192778
OAZV01000004
[OAZV] human gut metagenome; faeces
2247
2171
-
Arg
TCT
[ENA]
¢þ
>WENV180192847
OAZV01000146
[OAZV] human gut metagenome; faeces
3582
3508
-
Ala
TGC
[ENA]
¢þ
>WENV180192846
OAZV01000146
[OAZV] human gut metagenome; faeces
3673
3599
-
Ile
GAT
[ENA]
¢þ
>WENV180192845
OAZV01000131
[OAZV] human gut metagenome; faeces
5074
5149
+
Phe
GAA
[ENA]
¢þ
>WENV180192844
OAZV01000126
[OAZV] human gut metagenome; faeces
5561
5486
-
Lys
TTT
[ENA]
¢þ
>WENV180192843
OAZV01000126
[OAZV] human gut metagenome; faeces
5641
5566
-
Val
TAC
[ENA]
¢þ
>WENV180192840
OAZV01000086
[OAZV] human gut metagenome; faeces
8198
8274
+
Asp
GTC
[ENA]
¢þ
>WENV180192837
OAZV01000080
[OAZV] human gut metagenome; faeces
12876
12951
+
Gly
GCC
[ENA]
¢þ
>WENV180192838
OAZV01000080
[OAZV] human gut metagenome; faeces
13109
13184
+
Gly
GCC
[ENA]
¢þ
>WENV180192839
OAZV01000080
[OAZV] human gut metagenome; faeces
13221
13296
+
Gly
GCC
[ENA]
¢þ
>WENV180192802
OAZV01000020
[OAZV] human gut metagenome; faeces
16072
16147
+
Phe
GAA
[ENA]
¢þ
>WENV180192836
OAZV01000077
[OAZV] human gut metagenome; faeces
16114
16039
-
Thr
GGT
[ENA]
¢þ
>WENV180192777
OAZV01000003
[OAZV] human gut metagenome; faeces
16554
16470
-
Tyr
GTA
[ENA]
¢þ
>WENV180192776
OAZV01000003
[OAZV] human gut metagenome; faeces
16672
16588
-
Tyr
GTA
[ENA]
¢þ
>WENV180192801
OAZV01000019
[OAZV] human gut metagenome; faeces
27335
27260
-
Asn
GTT
[ENA]
¢þ
>WENV180192831
OAZV01000035
[OAZV] human gut metagenome; faeces
28325
28249
-
Arg
TCT
[ENA]
¢þ
>WENV180192830
OAZV01000035
[OAZV] human gut metagenome; faeces
28501
28426
-
Ile2
CAT
[ENA]
¢þ
>WENV180192799
OAZV01000019
[OAZV] human gut metagenome; faeces
29084
29159
+
Asn
GTT
[ENA]
¢þ
>WENV180192835
OAZV01000046
[OAZV] human gut metagenome; faeces
31242
31167
-
Thr
GGT
[ENA]
¢þ
>WENV180192834
OAZV01000046
[OAZV] human gut metagenome; faeces
31323
31249
-
Gly
TCC
[ENA]
¢þ
>WENV180192800
OAZV01000019
[OAZV] human gut metagenome; faeces
31493
31568
+
Asn
GTT
[ENA]
¢þ
>WENV180192833
OAZV01000046
[OAZV] human gut metagenome; faeces
31524
31440
-
Tyr
GTA
[ENA]
¢þ
>WENV180192832
OAZV01000046
[OAZV] human gut metagenome; faeces
31608
31533
-
Thr
TGT
[ENA]
¢þ
>WENV180192797
OAZV01000012
[OAZV] human gut metagenome; faeces
33251
33338
+
Ser
TGA
[ENA]
¢þ
>WENV180192824
OAZV01000030
[OAZV] human gut metagenome; faeces
34664
34740
+
Arg
CCG
[ENA]
¢þ
>WENV180192825
OAZV01000030
[OAZV] human gut metagenome; faeces
34799
34874
+
His
GTG
[ENA]
¢þ
>WENV180192826
OAZV01000030
[OAZV] human gut metagenome; faeces
34895
34981
+
Leu
CAG
[ENA]
¢þ
>WENV180192827
OAZV01000030
[OAZV] human gut metagenome; faeces
35024
35100
+
Pro
TGG
[ENA]
¢þ
>WENV180192809
OAZV01000028
[OAZV] human gut metagenome; faeces
38759
38834
+
Lys
TTT
[ENA]
¢þ
>WENV180192810
OAZV01000028
[OAZV] human gut metagenome; faeces
38870
38945
+
Val
TAC
[ENA]
¢þ
>WENV180192811
OAZV01000028
[OAZV] human gut metagenome; faeces
38950
39025
+
Lys
TTT
[ENA]
¢þ
>WENV180192812
OAZV01000028
[OAZV] human gut metagenome; faeces
39077
39152
+
Val
TAC
[ENA]
¢þ
>WENV180192813
OAZV01000028
[OAZV] human gut metagenome; faeces
39157
39232
+
Lys
TTT
[ENA]
¢þ
>WENV180192814
OAZV01000028
[OAZV] human gut metagenome; faeces
39281
39356
+
Lys
TTT
[ENA]
¢þ
>WENV180192815
OAZV01000028
[OAZV] human gut metagenome; faeces
39390
39465
+
Lys
TTT
[ENA]
¢þ
>WENV180192794
OAZV01000011
[OAZV] human gut metagenome; faeces
40847
40933
+
Leu
CAG
[ENA]
¢þ
>WENV180192808
OAZV01000026
[OAZV] human gut metagenome; faeces
40863
40787
-
Arg
ACG
[ENA]
¢þ
>WENV180192795
OAZV01000011
[OAZV] human gut metagenome; faeces
40968
41054
+
Leu
CAG
[ENA]
¢þ
>WENV180192807
OAZV01000026
[OAZV] human gut metagenome; faeces
41004
40928
-
Arg
ACG
[ENA]
¢þ
>WENV180192806
OAZV01000026
[OAZV] human gut metagenome; faeces
41145
41069
-
Arg
ACG
[ENA]
¢þ
>WENV180192805
OAZV01000026
[OAZV] human gut metagenome; faeces
41241
41149
-
Ser
GCT
[ENA]
¢þ
>WENV180192798
OAZV01000013
[OAZV] human gut metagenome; faeces
42798
42722
-
Pro
CGG
[ENA]
¢þ
>WENV180192829
OAZV01000035
[OAZV] human gut metagenome; faeces
44267
44178
-
Ser
CGA
[ENA]
¢þ
>WENV180192828
OAZV01000035
[OAZV] human gut metagenome; faeces
45259
45334
+
Asn
GTT
[ENA]
¢þ
>WENV180192779
OAZV01000005
[OAZV] human gut metagenome; faeces
49436
49512
+
fMet
CAT
[ENA]
¢þ
>WENV180192780
OAZV01000005
[OAZV] human gut metagenome; faeces
49546
49622
+
fMet
CAT
[ENA]
¢þ
>WENV180192781
OAZV01000005
[OAZV] human gut metagenome; faeces
49656
49732
+
fMet
CAT
[ENA]
¢þ
>WENV180192821
OAZV01000029
[OAZV] human gut metagenome; faeces
51347
51272
-
Ala
GGC
[ENA]
¢þ
>WENV180192820
OAZV01000029
[OAZV] human gut metagenome; faeces
51462
51387
-
Ala
GGC
[ENA]
¢þ
>WENV180192773
OAZV01000002
[OAZV] human gut metagenome; faeces
53492
53567
+
Gly
GCC
[ENA]
¢þ
>WENV180192774
OAZV01000002
[OAZV] human gut metagenome; faeces
53621
53694
+
Cys
GCA
[ENA]
¢þ
>WENV180192775
OAZV01000002
[OAZV] human gut metagenome; faeces
53707
53793
+
Leu
TAA
[ENA]
¢þ
>WENV180192816
OAZV01000029
[OAZV] human gut metagenome; faeces
55909
55984
+
Val
TAC
[ENA]
¢þ
>WENV180192817
OAZV01000029
[OAZV] human gut metagenome; faeces
56031
56106
+
Val
TAC
[ENA]
¢þ
>WENV180192818
OAZV01000029
[OAZV] human gut metagenome; faeces
56153
56228
+
Val
TAC
[ENA]
¢þ
>WENV180192819
OAZV01000029
[OAZV] human gut metagenome; faeces
56233
56308
+
Lys
TTT
[ENA]
¢þ
>WENV180192793
OAZV01000010
[OAZV] human gut metagenome; faeces
67199
67293
+
SeC
TCA
[ENA]
¢þ
>WENV180192791
OAZV01000007
[OAZV] human gut metagenome; faeces
94910
94834
-
Val
GAC
[ENA]
¢þ
>WENV180192790
OAZV01000007
[OAZV] human gut metagenome; faeces
94991
94915
-
Val
GAC
[ENA]
¢þ
>WENV180192782
OAZV01000005
[OAZV] human gut metagenome; faeces
95008
94935
-
Gly
CCC
[ENA]
¢þ
>WENV180192792
OAZV01000009
[OAZV] human gut metagenome; faeces
98628
98704
+
Pro
GGG
[ENA]
¢þ
>WENV180192789
OAZV01000006
[OAZV] human gut metagenome; faeces
99329
99255
-
Gln
CTG
[ENA]
¢þ
>WENV180192788
OAZV01000006
[OAZV] human gut metagenome; faeces
99441
99367
-
Gln
CTG
[ENA]
¢þ
>WENV180192787
OAZV01000006
[OAZV] human gut metagenome; faeces
99566
99490
-
Met
CAT
[ENA]
¢þ
>WENV180192786
OAZV01000006
[OAZV] human gut metagenome; faeces
99656
99582
-
Gln
TTG
[ENA]
¢þ
>WENV180192785
OAZV01000006
[OAZV] human gut metagenome; faeces
99765
99691
-
Gln
TTG
[ENA]
¢þ
>WENV180192784
OAZV01000006
[OAZV] human gut metagenome; faeces
99873
99789
-
Leu
TAG
[ENA]
¢þ
>WENV180192783
OAZV01000006
[OAZV] human gut metagenome; faeces
99960
99884
-
Met
CAT
[ENA]
¢þ
>WENV180192796
OAZV01000011
[OAZV] human gut metagenome; faeces
105719
105635
-
Leu
CAA
[ENA]
¢þ
>WENV180192770
OAZV01000001
[OAZV] human gut metagenome; faeces
131710
131785
+
Ile2
CAT
[ENA]
¢þ
>WENV180192772
OAZV01000001
[OAZV] human gut metagenome; faeces
227042
226966
-
fMet
CAT
[ENA]
¢þ
>WENV180192771
OAZV01000001
[OAZV] human gut metagenome; faeces
230909
230823
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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