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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OBAV] soil metagenome; soil
HIT:
6 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180220606
OBAV01000289
[OBAV] soil metagenome; soil
24
100
+
Met
CAT
[ENA]
¢þ
>WENV180220608
OBAV01000360
[OBAV] soil metagenome; soil
60
134
+
Pro
GGG
[ENA]
¢þ
>WENV180220607
OBAV01000289
[OBAV] soil metagenome; soil
110
194
+
Leu
TAG
[ENA]
¢þ
>WENV180220605
OBAV01000085
[OBAV] soil metagenome; soil
267
342
+
Glu
TTC
[ENA]
¢þ
>WENV180220603
OBAV01000003
[OBAV] soil metagenome; soil
4833
4908
+
Asn
GTT
[ENA]
¢þ
>WENV180220604
OBAV01000006
[OBAV] soil metagenome; soil
7917
7823
-
SeC
TCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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