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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
HIT:
110 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180226579
OBBR01002938
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180226578
OBBR01002920
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
1
76
+
Val
TAC
[ENA]
¢þ
>WENV180226570
OBBR01002718
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
2
78
+
Arg
ACG
[ENA]
¢þ
>WENV180226575
OBBR01002891
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
2
86
+
Tyr
GTA
[ENA]
¢þ
>WENV180226576
OBBR01002913
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
3
79
+
fMet
CAT
[ENA]
¢þ
>WENV180226574
OBBR01002859
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
9
95
+
Leu
CAG
[ENA]
¢þ
>WENV180226565
OBBR01001310
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
57
140
+
Leu
TAG
[ENA]
¢þ
>WENV180226564
OBBR01000676
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
65
149
+
Tyr
GTA
[ENA]
¢þ
>WENV180226562
OBBR01000626
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
71
155
+
Leu
TAG
[ENA]
¢þ
>WENV180226521
OBBR01000032
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
72
147
+
Thr
GGT
[ENA]
¢þ
>WENV180226580
OBBR01002939
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
76
1
-
Gly
GCC
[ENA]
¢þ
>WENV180226558
OBBR01000120
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180226577
OBBR01002919
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
78
2
-
Arg
ACG
[ENA]
¢þ
>WENV180226569
OBBR01002717
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
79
4
-
Ala
TGC
[ENA]
¢þ
>WENV180226561
OBBR01000302
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
83
10
-
Asn
GTT
[ENA]
¢þ
>WENV180226572
OBBR01002736
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
86
172
+
Leu
CAG
[ENA]
¢þ
>WENV180226480
OBBR01000004
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
93
167
+
Gln
CTG
[ENA]
¢þ
>WENV180226545
OBBR01000069
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV180226571
OBBR01002727
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
109
183
+
Gln
CTG
[ENA]
¢þ
>WENV180226511
OBBR01000020
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
113
188
+
Gly
GCC
[ENA]
¢þ
>WENV180226515
OBBR01000023
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
130
204
+
Gln
CTG
[ENA]
¢þ
>WENV180226567
OBBR01002193
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
132
204
+
Lys
CTT
[ENA]
¢þ
>WENV180226566
OBBR01001310
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
149
223
+
Thr
TGT
[ENA]
¢þ
>WENV180226573
OBBR01002762
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV180226535
OBBR01000050
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
166
91
-
Lys
TTT
[ENA]
¢þ
>WENV180226532
OBBR01000039
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
166
91
-
Gly
GCC
[ENA]
¢þ
>WENV180226519
OBBR01000030
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
170
84
-
Leu
CAG
[ENA]
¢þ
>WENV180226563
OBBR01000626
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
179
253
+
Gln
TTG
[ENA]
¢þ
>WENV180226485
OBBR01000007
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
186
261
+
Lys
TTT
[ENA]
¢þ
>WENV180226568
OBBR01002717
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
192
116
-
Ile
GAT
[ENA]
¢þ
>WENV180226546
OBBR01000069
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
235
310
+
Trp
CCA
[ENA]
¢þ
>WENV180226557
OBBR01000117
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
272
185
-
Ser
GGA
[ENA]
¢þ
>WENV180226530
OBBR01000037
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
274
350
+
Arg
ACG
[ENA]
¢þ
>WENV180226560
OBBR01000292
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
304
229
-
Glu
TTC
[ENA]
¢þ
>WENV180226537
OBBR01000056
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
347
263
-
Tyr
GTA
[ENA]
¢þ
>WENV180226559
OBBR01000176
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
611
536
-
Phe
GAA
[ENA]
¢þ
>WENV180226541
OBBR01000059
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV180226534
OBBR01000045
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
1123
1050
-
Gly
CCC
[ENA]
¢þ
>WENV180226536
OBBR01000051
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
1605
1530
-
Ile2
CAT
[ENA]
¢þ
>WENV180226556
OBBR01000100
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
1925
1849
-
Asp
GTC
[ENA]
¢þ
>WENV180226471
OBBR01000001
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV180226490
OBBR01000008
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
2906
2830
-
Arg
TCT
[ENA]
¢þ
>WENV180226554
OBBR01000085
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
8533
8458
-
Asn
GTT
[ENA]
¢þ
>WENV180226555
OBBR01000100
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
10150
10074
-
Asp
GTC
[ENA]
¢þ
>WENV180226553
OBBR01000085
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
10942
10867
-
Asn
GTT
[ENA]
¢þ
>WENV180226552
OBBR01000085
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
12691
12766
+
Asn
GTT
[ENA]
¢þ
>WENV180226544
OBBR01000068
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
16877
16953
+
Arg
TCT
[ENA]
¢þ
>WENV180226551
OBBR01000080
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
17220
17295
+
Gly
GCC
[ENA]
¢þ
>WENV180226520
OBBR01000031
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
24921
24846
-
Thr
CGT
[ENA]
¢þ
>WENV180226531
OBBR01000039
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
29032
29107
+
Phe
GAA
[ENA]
¢þ
>WENV180226550
OBBR01000070
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
31305
31230
-
Thr
GGT
[ENA]
¢þ
>WENV180226549
OBBR01000070
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
31386
31312
-
Gly
TCC
[ENA]
¢þ
>WENV180226548
OBBR01000070
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
31587
31503
-
Tyr
GTA
[ENA]
¢þ
>WENV180226547
OBBR01000070
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
31671
31596
-
Thr
TGT
[ENA]
¢þ
>WENV180226543
OBBR01000063
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
47848
47772
-
Pro
TGG
[ENA]
¢þ
>WENV180226542
OBBR01000063
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
47977
47891
-
Leu
CAG
[ENA]
¢þ
>WENV180226539
OBBR01000057
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
50565
50489
-
Arg
TCT
[ENA]
¢þ
>WENV180226538
OBBR01000057
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
50648
50571
-
Ile2
CAT
[ENA]
¢þ
>WENV180226540
OBBR01000058
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
53972
53896
-
Val
GAC
[ENA]
¢þ
>WENV180226473
OBBR01000001
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
55179
55105
-
Arg
CCT
[ENA]
¢þ
>WENV180226510
OBBR01000019
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
65962
66056
+
SeC
TCA
[ENA]
¢þ
>WENV180226529
OBBR01000034
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
71538
71462
-
Pro
TGG
[ENA]
¢þ
>WENV180226528
OBBR01000034
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
71667
71581
-
Leu
CAG
[ENA]
¢þ
>WENV180226527
OBBR01000034
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
71763
71688
-
His
GTG
[ENA]
¢þ
>WENV180226526
OBBR01000034
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
71895
71819
-
Arg
CCG
[ENA]
¢þ
>WENV180226503
OBBR01000013
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
72455
72382
-
Gly
CCC
[ENA]
¢þ
>WENV180226533
OBBR01000043
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
86652
86568
-
Tyr
GTA
[ENA]
¢þ
>WENV180226509
OBBR01000018
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
97353
97277
-
fMet
CAT
[ENA]
¢þ
>WENV180226522
OBBR01000032
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
99530
99616
+
Leu
GAG
[ENA]
¢þ
>WENV180226508
OBBR01000018
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
101370
101284
-
Leu
GAG
[ENA]
¢þ
>WENV180226481
OBBR01000004
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
102399
102323
-
Arg
TCT
[ENA]
¢þ
>WENV180226523
OBBR01000032
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
103397
103473
+
fMet
CAT
[ENA]
¢þ
>WENV180226525
OBBR01000034
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
106439
106364
-
Trp
CCA
[ENA]
¢þ
>WENV180226524
OBBR01000034
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
106524
106448
-
Asp
GTC
[ENA]
¢þ
>WENV180226491
OBBR01000009
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
107637
107713
+
Pro
GGG
[ENA]
¢þ
>WENV180226504
OBBR01000016
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
114572
114656
+
Leu
CAA
[ENA]
¢þ
>WENV180226518
OBBR01000027
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
115989
115914
-
Asn
GTT
[ENA]
¢þ
>WENV180226516
OBBR01000027
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
117747
117822
+
Asn
GTT
[ENA]
¢þ
>WENV180226517
OBBR01000027
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
126743
126668
-
Asn
GTT
[ENA]
¢þ
>WENV180226513
OBBR01000022
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
133598
133673
+
Thr
TGT
[ENA]
¢þ
>WENV180226514
OBBR01000022
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
133677
133751
+
Gly
TCC
[ENA]
¢þ
>WENV180226512
OBBR01000020
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
134660
134744
+
Leu
CAA
[ENA]
¢þ
>WENV180226474
OBBR01000002
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
136230
136317
+
Ser
GGA
[ENA]
¢þ
>WENV180226500
OBBR01000011
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
146116
146191
+
Ile2
CAT
[ENA]
¢þ
>WENV180226502
OBBR01000013
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
182474
182549
+
Phe
GAA
[ENA]
¢þ
>WENV180226507
OBBR01000018
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
185792
185717
-
Thr
GGT
[ENA]
¢þ
>WENV180226475
OBBR01000002
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
188242
188329
+
Ser
TGA
[ENA]
¢þ
>WENV180226506
OBBR01000016
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
194381
194295
-
Leu
CAG
[ENA]
¢þ
>WENV180226505
OBBR01000016
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
194502
194416
-
Leu
CAG
[ENA]
¢þ
>WENV180226484
OBBR01000006
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
206717
206641
-
Pro
CGG
[ENA]
¢þ
>WENV180226487
OBBR01000008
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
217311
217386
+
Thr
CGT
[ENA]
¢þ
>WENV180226501
OBBR01000012
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
222216
222303
+
Ser
GGA
[ENA]
¢þ
>WENV180226499
OBBR01000010
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
223765
223679
-
Leu
TAA
[ENA]
¢þ
>WENV180226498
OBBR01000010
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
223852
223779
-
Cys
GCA
[ENA]
¢þ
>WENV180226497
OBBR01000010
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
223968
223893
-
Gly
GCC
[ENA]
¢þ
>WENV180226472
OBBR01000001
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
225157
225081
-
Pro
GGG
[ENA]
¢þ
>WENV180226492
OBBR01000009
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
231628
231702
+
Arg
CCT
[ENA]
¢þ
>WENV180226496
OBBR01000010
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
245164
245075
-
Ser
CGA
[ENA]
¢þ
>WENV180226495
OBBR01000009
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
252100
252025
-
Ala
GGC
[ENA]
¢þ
>WENV180226494
OBBR01000009
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
252217
252142
-
Ala
GGC
[ENA]
¢þ
>WENV180226493
OBBR01000009
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
254916
254991
+
Val
TAC
[ENA]
¢þ
>WENV180226489
OBBR01000008
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
266186
266110
-
Asp
GTC
[ENA]
¢þ
>WENV180226488
OBBR01000008
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
275639
275563
-
Asp
GTC
[ENA]
¢þ
>WENV180226479
OBBR01000003
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
276107
276031
-
Val
GAC
[ENA]
¢þ
>WENV180226478
OBBR01000003
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
276188
276112
-
Val
GAC
[ENA]
¢þ
>WENV180226486
OBBR01000007
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
278854
278941
+
Ser
TGA
[ENA]
¢þ
>WENV180226476
OBBR01000002
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
283641
283728
+
Ser
GGA
[ENA]
¢þ
>WENV180226482
OBBR01000005
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
287566
287490
-
Pro
CGG
[ENA]
¢þ
>WENV180226483
OBBR01000006
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
337313
337407
+
SeC
TCA
[ENA]
¢þ
>WENV180226477
OBBR01000002
[OBBR] human gut metagenome; Infant 2 DOL 8 gut
426407
426332
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK