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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBCE] human gut metagenome; human gut
HIT:
97 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180228813
OBCE01012104
[OBCE] human gut metagenome; human gut
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV180228823
OBCE01020494
[OBCE] human gut metagenome; human gut
2
72
+
Gly
TCC
[ENA]
¢þ
>WENV180228816
OBCE01013055
[OBCE] human gut metagenome; human gut
60
133
+
Asp
GTC
[ENA]
¢þ
>WENV180228817
OBCE01017929
[OBCE] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV180228769
OBCE01000036
[OBCE] human gut metagenome; human gut
67
150
+
Tyr
GTA
[ENA]
¢þ
>WENV180228789
OBCE01000525
[OBCE] human gut metagenome; human gut
67
157
+
Ser
GGA
[ENA]
¢þ
>WENV180228802
OBCE01001707
[OBCE] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV180228796
OBCE01001207
[OBCE] human gut metagenome; human gut
77
2
-
Asn
GTT
[ENA]
¢þ
>WENV180228825
OBCE01020799
[OBCE] human gut metagenome; human gut
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180228824
OBCE01020494
[OBCE] human gut metagenome; human gut
86
159
+
Ile
GAT
[ENA]
¢þ
>WENV180228814
OBCE01012104
[OBCE] human gut metagenome; human gut
87
175
+
Leu
TAA
[ENA]
¢þ
>WENV180228729
OBCE01000001
[OBCE] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¢þ
>WENV180228820
OBCE01020128
[OBCE] human gut metagenome; human gut
104
175
+
Met
CAT
[ENA]
¢þ
>WENV180228807
OBCE01005083
[OBCE] human gut metagenome; human gut
108
180
+
Gly
GCC
[ENA]
¢þ
>WENV180228822
OBCE01020468
[OBCE] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180228809
OBCE01005504
[OBCE] human gut metagenome; human gut
132
204
+
Arg
CCG
[ENA]
¢þ
>WENV180228812
OBCE01008418
[OBCE] human gut metagenome; human gut
136
64
-
Thr
AGT
[ENA]
¢þ
>WENV180228821
OBCE01020253
[OBCE] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180228795
OBCE01001044
[OBCE] human gut metagenome; human gut
142
65
-
Phe
GAA
[ENA]
¢þ
>WENV180228819
OBCE01019869
[OBCE] human gut metagenome; human gut
145
72
-
Pro
TGG
[ENA]
¢þ
>WENV180228806
OBCE01003873
[OBCE] human gut metagenome; human gut
153
62
-
Ser
TGA
[ENA]
¢þ
>WENV180228770
OBCE01000036
[OBCE] human gut metagenome; human gut
155
229
+
Gln
TTG
[ENA]
¢þ
>WENV180228810
OBCE01006690
[OBCE] human gut metagenome; human gut
156
226
+
Gly
CCC
[ENA]
¢þ
>WENV180228818
OBCE01018092
[OBCE] human gut metagenome; human gut
158
85
-
Cys
GCA
[ENA]
¢þ
>WENV180228801
OBCE01001707
[OBCE] human gut metagenome; human gut
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV180228788
OBCE01000393
[OBCE] human gut metagenome; human gut
183
112
-
Ile2
CAT
[ENA]
¢þ
>WENV180228815
OBCE01012104
[OBCE] human gut metagenome; human gut
188
262
+
Arg
ACG
[ENA]
¢þ
>WENV180228808
OBCE01005246
[OBCE] human gut metagenome; human gut
195
269
+
Ala
AGC
[ENA]
¢þ
>WENV180228730
OBCE01000001
[OBCE] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¢þ
>WENV180228794
OBCE01001044
[OBCE] human gut metagenome; human gut
221
146
-
Asp
GTC
[ENA]
¢þ
>WENV180228771
OBCE01000036
[OBCE] human gut metagenome; human gut
233
306
+
Lys
TTT
[ENA]
¢þ
>WENV180228805
OBCE01003873
[OBCE] human gut metagenome; human gut
235
162
-
Ile2
CAT
[ENA]
¢þ
>WENV180228800
OBCE01001707
[OBCE] human gut metagenome; human gut
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV180228811
OBCE01007885
[OBCE] human gut metagenome; human gut
265
193
-
Gly
TCC
[ENA]
¢þ
>WENV180228731
OBCE01000001
[OBCE] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¢þ
>WENV180228804
OBCE01003873
[OBCE] human gut metagenome; human gut
336
262
-
Met
CAT
[ENA]
¢þ
>WENV180228799
OBCE01001707
[OBCE] human gut metagenome; human gut
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV180228793
OBCE01001044
[OBCE] human gut metagenome; human gut
343
268
-
fMet
CAT
[ENA]
¢þ
>WENV180228732
OBCE01000001
[OBCE] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¢þ
>WENV180228798
OBCE01001707
[OBCE] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV180228803
OBCE01001877
[OBCE] human gut metagenome; human gut
435
509
+
Ala
TGC
[ENA]
¢þ
>WENV180228792
OBCE01001044
[OBCE] human gut metagenome; human gut
465
376
-
Ser
TGA
[ENA]
¢þ
>WENV180228777
OBCE01000265
[OBCE] human gut metagenome; human gut
467
539
+
Gly
TCC
[ENA]
¢þ
>WENV180228733
OBCE01000001
[OBCE] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>WENV180228797
OBCE01001707
[OBCE] human gut metagenome; human gut
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV180228791
OBCE01001044
[OBCE] human gut metagenome; human gut
573
498
-
Ile2
CAT
[ENA]
¢þ
>WENV180228734
OBCE01000001
[OBCE] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¢þ
>WENV180228790
OBCE01001044
[OBCE] human gut metagenome; human gut
667
592
-
Met
CAT
[ENA]
¢þ
>WENV180228735
OBCE01000001
[OBCE] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¢þ
>WENV180228778
OBCE01000265
[OBCE] human gut metagenome; human gut
701
775
+
Pro
TGG
[ENA]
¢þ
>WENV180228736
OBCE01000001
[OBCE] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¢þ
>WENV180228774
OBCE01000182
[OBCE] human gut metagenome; human gut
851
921
+
Arg
TCT
[ENA]
¢þ
>WENV180228737
OBCE01000001
[OBCE] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¢þ
>WENV180228738
OBCE01000001
[OBCE] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¢þ
>WENV180228775
OBCE01000182
[OBCE] human gut metagenome; human gut
1012
1086
+
Sup
TCA
[ENA]
¢þ
>WENV180228739
OBCE01000001
[OBCE] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¢þ
>WENV180228776
OBCE01000182
[OBCE] human gut metagenome; human gut
1084
1154
+
Phe
GAA
[ENA]
¢þ
>WENV180228784
OBCE01000270
[OBCE] human gut metagenome; human gut
1164
1090
-
Lys
TTT
[ENA]
¢þ
>WENV180228781
OBCE01000266
[OBCE] human gut metagenome; human gut
1534
1464
-
Asn
GTT
[ENA]
¢þ
>WENV180228782
OBCE01000270
[OBCE] human gut metagenome; human gut
1839
1920
+
Leu
TAA
[ENA]
¢þ
>WENV180228779
OBCE01000265
[OBCE] human gut metagenome; human gut
1909
1981
+
Ile
GAT
[ENA]
¢þ
>WENV180228787
OBCE01000307
[OBCE] human gut metagenome; human gut
2025
1952
-
Lys
TTT
[ENA]
¢þ
>WENV180228773
OBCE01000116
[OBCE] human gut metagenome; human gut
2063
1992
-
Asp
GTC
[ENA]
¢þ
>WENV180228783
OBCE01000270
[OBCE] human gut metagenome; human gut
2094
2166
+
Thr
TGT
[ENA]
¢þ
>WENV180228786
OBCE01000307
[OBCE] human gut metagenome; human gut
2103
2029
-
Gln
TTG
[ENA]
¢þ
>WENV180228785
OBCE01000277
[OBCE] human gut metagenome; human gut
2267
2359
+
Ser
TGA
[ENA]
¢þ
>WENV180228780
OBCE01000266
[OBCE] human gut metagenome; human gut
2364
2294
-
Ala
TGC
[ENA]
¢þ
>WENV180228772
OBCE01000075
[OBCE] human gut metagenome; human gut
6979
7065
+
Leu
GAG
[ENA]
¢þ
>WENV180228768
OBCE01000027
[OBCE] human gut metagenome; human gut
12296
12207
-
Ser
CGA
[ENA]
¢þ
>WENV180228767
OBCE01000024
[OBCE] human gut metagenome; human gut
14896
14806
-
Ser
GGA
[ENA]
¢þ
>WENV180228766
OBCE01000024
[OBCE] human gut metagenome; human gut
15021
14948
-
Glu
TTC
[ENA]
¢þ
>WENV180228765
OBCE01000024
[OBCE] human gut metagenome; human gut
15096
15022
-
Asn
GTT
[ENA]
¢þ
>WENV180228764
OBCE01000024
[OBCE] human gut metagenome; human gut
15179
15106
-
Gly
TCC
[ENA]
¢þ
>WENV180228763
OBCE01000024
[OBCE] human gut metagenome; human gut
15272
15197
-
His
GTG
[ENA]
¢þ
>WENV180228762
OBCE01000024
[OBCE] human gut metagenome; human gut
15357
15283
-
Phe
GAA
[ENA]
¢þ
>WENV180228761
OBCE01000024
[OBCE] human gut metagenome; human gut
15442
15367
-
Asp
GTC
[ENA]
¢þ
>WENV180228760
OBCE01000024
[OBCE] human gut metagenome; human gut
15530
15457
-
fMet
CAT
[ENA]
¢þ
>WENV180228757
OBCE01000013
[OBCE] human gut metagenome; human gut
19934
20005
+
Arg
CCG
[ENA]
¢þ
>WENV180228750
OBCE01000002
[OBCE] human gut metagenome; human gut
38841
38766
-
Arg
CCT
[ENA]
¢þ
>WENV180228758
OBCE01000019
[OBCE] human gut metagenome; human gut
47250
47324
+
Glu
TTC
[ENA]
¢þ
>WENV180228759
OBCE01000019
[OBCE] human gut metagenome; human gut
47330
47402
+
Asp
GTC
[ENA]
¢þ
>WENV180228756
OBCE01000012
[OBCE] human gut metagenome; human gut
75661
75753
+
Ser
TGA
[ENA]
¢þ
>WENV180228755
OBCE01000008
[OBCE] human gut metagenome; human gut
80431
80341
-
Ser
GCT
[ENA]
¢þ
>WENV180228754
OBCE01000008
[OBCE] human gut metagenome; human gut
80508
80434
-
Asn
GTT
[ENA]
¢þ
>WENV180228744
OBCE01000002
[OBCE] human gut metagenome; human gut
89598
89673
+
Arg
TCT
[ENA]
¢þ
>WENV180228753
OBCE01000006
[OBCE] human gut metagenome; human gut
168108
168182
+
Arg
TCT
[ENA]
¢þ
>WENV180228751
OBCE01000003
[OBCE] human gut metagenome; human gut
202764
202692
-
Thr
CGT
[ENA]
¢þ
>WENV180228740
OBCE01000001
[OBCE] human gut metagenome; human gut
254358
254444
+
Leu
GAG
[ENA]
¢þ
>WENV180228741
OBCE01000001
[OBCE] human gut metagenome; human gut
265691
265773
+
Tyr
GTA
[ENA]
¢þ
>WENV180228742
OBCE01000001
[OBCE] human gut metagenome; human gut
265781
265854
+
Gln
TTG
[ENA]
¢þ
>WENV180228745
OBCE01000002
[OBCE] human gut metagenome; human gut
281376
281449
+
Arg
CCG
[ENA]
¢þ
>WENV180228752
OBCE01000004
[OBCE] human gut metagenome; human gut
339914
339841
-
Pro
TGG
[ENA]
¢þ
>WENV180228749
OBCE01000002
[OBCE] human gut metagenome; human gut
504555
504480
-
Ile2
CAT
[ENA]
¢þ
>WENV180228748
OBCE01000002
[OBCE] human gut metagenome; human gut
587798
587724
-
Lys
CTT
[ENA]
¢þ
>WENV180228747
OBCE01000002
[OBCE] human gut metagenome; human gut
707120
707047
-
Ile2
CAT
[ENA]
¢þ
>WENV180228746
OBCE01000002
[OBCE] human gut metagenome; human gut
779497
779424
-
Glu
TTC
[ENA]
¢þ
>WENV180228743
OBCE01000001
[OBCE] human gut metagenome; human gut
888919
888991
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK