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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBCF] human gut metagenome; human gut
HIT:
100 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180228874
OBCF01000038
[OBCF] human gut metagenome; human gut
1
72
+
Glu
TTC
[ENA]
¢þ
>WENV180228904
OBCF01007068
[OBCF] human gut metagenome; human gut
1
90
+
Ser
TGA
[ENA]
¢þ
>WENV180228924
OBCF01018349
[OBCF] human gut metagenome; human gut
2
72
+
Gly
TCC
[ENA]
¢þ
>WENV180228889
OBCF01000254
[OBCF] human gut metagenome; human gut
2
75
+
Lys
TTT
[ENA]
¢þ
>WENV180228912
OBCF01010191
[OBCF] human gut metagenome; human gut
3
75
+
Thr
TGT
[ENA]
¢þ
>WENV180228842
OBCF01000003
[OBCF] human gut metagenome; human gut
5
79
+
Val
TAC
[ENA]
¢þ
>WENV180228919
OBCF01016989
[OBCF] human gut metagenome; human gut
10
81
+
Met
CAT
[ENA]
¢þ
>WENV180228907
OBCF01007238
[OBCF] human gut metagenome; human gut
59
131
+
Thr
AGT
[ENA]
¢þ
>WENV180228890
OBCF01000309
[OBCF] human gut metagenome; human gut
59
149
+
Ser
GGA
[ENA]
¢þ
>WENV180228922
OBCF01018313
[OBCF] human gut metagenome; human gut
64
145
+
Leu
TAG
[ENA]
¢þ
>WENV180228918
OBCF01016138
[OBCF] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV180228915
OBCF01010928
[OBCF] human gut metagenome; human gut
75
1
-
Arg
ACG
[ENA]
¢þ
>WENV180228902
OBCF01006435
[OBCF] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV180228875
OBCF01000038
[OBCF] human gut metagenome; human gut
80
155
+
Val
TAC
[ENA]
¢þ
>WENV180228843
OBCF01000003
[OBCF] human gut metagenome; human gut
84
158
+
Lys
TTT
[ENA]
¢þ
>WENV180228925
OBCF01018349
[OBCF] human gut metagenome; human gut
86
159
+
Ile
GAT
[ENA]
¢þ
>WENV180228826
OBCF01000001
[OBCF] human gut metagenome; human gut
89
163
+
Val
TAC
[ENA]
¢þ
>WENV180228900
OBCF01004987
[OBCF] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV180228905
OBCF01007068
[OBCF] human gut metagenome; human gut
123
198
+
fMet
CAT
[ENA]
¢þ
>WENV180228923
OBCF01018323
[OBCF] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180228910
OBCF01009499
[OBCF] human gut metagenome; human gut
132
207
+
Val
AAC
[ENA]
¢þ
>WENV180228921
OBCF01018312
[OBCF] human gut metagenome; human gut
142
65
-
Phe
GAA
[ENA]
¢þ
>WENV180228920
OBCF01017861
[OBCF] human gut metagenome; human gut
145
72
-
Pro
TGG
[ENA]
¢þ
>WENV180228911
OBCF01009835
[OBCF] human gut metagenome; human gut
147
219
+
Arg
TCT
[ENA]
¢þ
>WENV180228899
OBCF01003699
[OBCF] human gut metagenome; human gut
153
62
-
Ser
TGA
[ENA]
¢þ
>WENV180228916
OBCF01011657
[OBCF] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180228876
OBCF01000038
[OBCF] human gut metagenome; human gut
162
237
+
Thr
TGT
[ENA]
¢þ
>WENV180228893
OBCF01000444
[OBCF] human gut metagenome; human gut
166
95
-
Ile2
CAT
[ENA]
¢þ
>WENV180228903
OBCF01006435
[OBCF] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV180228827
OBCF01000001
[OBCF] human gut metagenome; human gut
173
248
+
Asp
GTC
[ENA]
¢þ
>WENV180228844
OBCF01000003
[OBCF] human gut metagenome; human gut
173
256
+
Leu
TAG
[ENA]
¢þ
>WENV180228909
OBCF01008927
[OBCF] human gut metagenome; human gut
174
104
-
Gly
GCC
[ENA]
¢þ
>WENV180228914
OBCF01010928
[OBCF] human gut metagenome; human gut
176
88
-
Leu
TAA
[ENA]
¢þ
>WENV180228901
OBCF01006014
[OBCF] human gut metagenome; human gut
177
249
+
Gly
TCC
[ENA]
¢þ
>WENV180228917
OBCF01012881
[OBCF] human gut metagenome; human gut
189
116
-
Asp
GTC
[ENA]
¢þ
>WENV180228908
OBCF01008560
[OBCF] human gut metagenome; human gut
196
268
+
Ala
AGC
[ENA]
¢þ
>WENV180228898
OBCF01003699
[OBCF] human gut metagenome; human gut
235
162
-
Ile2
CAT
[ENA]
¢þ
>WENV180228877
OBCF01000038
[OBCF] human gut metagenome; human gut
242
325
+
Tyr
GTA
[ENA]
¢þ
>WENV180228906
OBCF01007068
[OBCF] human gut metagenome; human gut
245
320
+
Asp
GTC
[ENA]
¢þ
>WENV180228913
OBCF01010928
[OBCF] human gut metagenome; human gut
262
188
-
Gly
GCC
[ENA]
¢þ
>WENV180228845
OBCF01000003
[OBCF] human gut metagenome; human gut
262
337
+
Thr
TGT
[ENA]
¢þ
>WENV180228896
OBCF01002239
[OBCF] human gut metagenome; human gut
291
365
+
Lys
TTT
[ENA]
¢þ
>WENV180228828
OBCF01000001
[OBCF] human gut metagenome; human gut
294
366
+
Phe
GAA
[ENA]
¢þ
>WENV180228894
OBCF01001980
[OBCF] human gut metagenome; human gut
303
230
-
Thr
TGT
[ENA]
¢þ
>WENV180228878
OBCF01000038
[OBCF] human gut metagenome; human gut
330
404
+
Gln
TTG
[ENA]
¢þ
>WENV180228897
OBCF01003699
[OBCF] human gut metagenome; human gut
336
262
-
Met
CAT
[ENA]
¢þ
>WENV180228846
OBCF01000003
[OBCF] human gut metagenome; human gut
342
413
+
Gly
GCC
[ENA]
¢þ
>WENV180228829
OBCF01000001
[OBCF] human gut metagenome; human gut
371
453
+
Tyr
GTA
[ENA]
¢þ
>WENV180228895
OBCF01001989
[OBCF] human gut metagenome; human gut
396
324
-
Arg
CCG
[ENA]
¢þ
>WENV180228879
OBCF01000038
[OBCF] human gut metagenome; human gut
408
481
+
Lys
TTT
[ENA]
¢þ
>WENV180228847
OBCF01000003
[OBCF] human gut metagenome; human gut
429
514
+
Leu
TAA
[ENA]
¢þ
>WENV180228830
OBCF01000001
[OBCF] human gut metagenome; human gut
457
530
+
Trp
CCA
[ENA]
¢þ
>WENV180228848
OBCF01000003
[OBCF] human gut metagenome; human gut
529
602
+
Arg
ACG
[ENA]
¢þ
>WENV180228831
OBCF01000001
[OBCF] human gut metagenome; human gut
567
640
+
His
GTG
[ENA]
¢þ
>WENV180228832
OBCF01000001
[OBCF] human gut metagenome; human gut
653
726
+
Gln
TTG
[ENA]
¢þ
>WENV180228849
OBCF01000003
[OBCF] human gut metagenome; human gut
692
765
+
Pro
TGG
[ENA]
¢þ
>WENV180228833
OBCF01000001
[OBCF] human gut metagenome; human gut
751
821
+
Cys
GCA
[ENA]
¢þ
>WENV180228834
OBCF01000001
[OBCF] human gut metagenome; human gut
834
919
+
Leu
CAA
[ENA]
¢þ
>WENV180228881
OBCF01000227
[OBCF] human gut metagenome; human gut
884
954
+
Arg
TCT
[ENA]
¢þ
>WENV180228882
OBCF01000227
[OBCF] human gut metagenome; human gut
1045
1119
+
Sup
TCA
[ENA]
¢þ
>WENV180228884
OBCF01000231
[OBCF] human gut metagenome; human gut
1099
1171
+
Gly
TCC
[ENA]
¢þ
>WENV180228883
OBCF01000227
[OBCF] human gut metagenome; human gut
1117
1187
+
Phe
GAA
[ENA]
¢þ
>WENV180228892
OBCF01000365
[OBCF] human gut metagenome; human gut
1166
1092
-
Lys
TTT
[ENA]
¢þ
>WENV180228885
OBCF01000231
[OBCF] human gut metagenome; human gut
1333
1407
+
Pro
TGG
[ENA]
¢þ
>WENV180228856
OBCF01000006
[OBCF] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180228888
OBCF01000243
[OBCF] human gut metagenome; human gut
1592
1522
-
Asn
GTT
[ENA]
¢þ
>WENV180228891
OBCF01000365
[OBCF] human gut metagenome; human gut
1841
1922
+
Leu
TAA
[ENA]
¢þ
>WENV180228887
OBCF01000243
[OBCF] human gut metagenome; human gut
2422
2352
-
Ala
TGC
[ENA]
¢þ
>WENV180228880
OBCF01000154
[OBCF] human gut metagenome; human gut
2429
2500
+
Asp
GTC
[ENA]
¢þ
>WENV180228886
OBCF01000231
[OBCF] human gut metagenome; human gut
2541
2613
+
Ile
GAT
[ENA]
¢þ
>WENV180228853
OBCF01000005
[OBCF] human gut metagenome; human gut
5201
5128
-
Arg
CCG
[ENA]
¢þ
>WENV180228861
OBCF01000017
[OBCF] human gut metagenome; human gut
5535
5606
+
Arg
CCG
[ENA]
¢þ
>WENV180228857
OBCF01000008
[OBCF] human gut metagenome; human gut
10209
10135
-
Arg
TCT
[ENA]
¢þ
>WENV180228871
OBCF01000027
[OBCF] human gut metagenome; human gut
15189
15099
-
Ser
GGA
[ENA]
¢þ
>WENV180228870
OBCF01000027
[OBCF] human gut metagenome; human gut
15314
15241
-
Glu
TTC
[ENA]
¢þ
>WENV180228869
OBCF01000027
[OBCF] human gut metagenome; human gut
15389
15315
-
Asn
GTT
[ENA]
¢þ
>WENV180228868
OBCF01000027
[OBCF] human gut metagenome; human gut
15472
15399
-
Gly
TCC
[ENA]
¢þ
>WENV180228867
OBCF01000027
[OBCF] human gut metagenome; human gut
15565
15490
-
His
GTG
[ENA]
¢þ
>WENV180228866
OBCF01000027
[OBCF] human gut metagenome; human gut
15652
15578
-
Phe
GAA
[ENA]
¢þ
>WENV180228865
OBCF01000027
[OBCF] human gut metagenome; human gut
15737
15662
-
Asp
GTC
[ENA]
¢þ
>WENV180228864
OBCF01000027
[OBCF] human gut metagenome; human gut
15825
15752
-
fMet
CAT
[ENA]
¢þ
>WENV180228872
OBCF01000031
[OBCF] human gut metagenome; human gut
45181
45267
+
Leu
GAG
[ENA]
¢þ
>WENV180228873
OBCF01000031
[OBCF] human gut metagenome; human gut
45289
45362
+
Gly
TCC
[ENA]
¢þ
>WENV180228862
OBCF01000022
[OBCF] human gut metagenome; human gut
46904
46978
+
Glu
TTC
[ENA]
¢þ
>WENV180228863
OBCF01000022
[OBCF] human gut metagenome; human gut
46984
47056
+
Asp
GTC
[ENA]
¢þ
>WENV180228860
OBCF01000013
[OBCF] human gut metagenome; human gut
53881
53791
-
Ser
GCT
[ENA]
¢þ
>WENV180228859
OBCF01000013
[OBCF] human gut metagenome; human gut
53958
53884
-
Asn
GTT
[ENA]
¢þ
>WENV180228858
OBCF01000012
[OBCF] human gut metagenome; human gut
75691
75783
+
Ser
TGA
[ENA]
¢þ
>WENV180228838
OBCF01000002
[OBCF] human gut metagenome; human gut
77610
77682
+
Thr
GGT
[ENA]
¢þ
>WENV180228850
OBCF01000004
[OBCF] human gut metagenome; human gut
81335
81410
+
Ile2
CAT
[ENA]
¢þ
>WENV180228855
OBCF01000006
[OBCF] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180228854
OBCF01000006
[OBCF] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180228852
OBCF01000005
[OBCF] human gut metagenome; human gut
196979
196904
-
Arg
TCT
[ENA]
¢þ
>WENV180228851
OBCF01000005
[OBCF] human gut metagenome; human gut
247736
247811
+
Arg
CCT
[ENA]
¢þ
>WENV180228835
OBCF01000001
[OBCF] human gut metagenome; human gut
254146
254232
+
Leu
GAG
[ENA]
¢þ
>WENV180228836
OBCF01000001
[OBCF] human gut metagenome; human gut
265479
265561
+
Tyr
GTA
[ENA]
¢þ
>WENV180228837
OBCF01000001
[OBCF] human gut metagenome; human gut
265569
265642
+
Gln
TTG
[ENA]
¢þ
>WENV180228841
OBCF01000002
[OBCF] human gut metagenome; human gut
364317
364245
-
Thr
CGT
[ENA]
¢þ
>WENV180228840
OBCF01000002
[OBCF] human gut metagenome; human gut
602998
602909
-
Ser
CGA
[ENA]
¢þ
>WENV180228839
OBCF01000002
[OBCF] human gut metagenome; human gut
637282
637207
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK