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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA gene List
[OBCG] human gut metagenome; human gut
HIT:
105 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180229016
OBCG01004541
[OBCG] human gut metagenome; human gut
1
71
+
Gly
GCC
[ENA]
¢þ
>WENV180228973
OBCG01000015
[OBCG] human gut metagenome; human gut
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV180229029
OBCG01022100
[OBCG] human gut metagenome; human gut
3
76
+
His
GTG
[ENA]
¢þ
>WENV180228926
OBCG01000001
[OBCG] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV180229028
OBCG01021684
[OBCG] human gut metagenome; human gut
59
142
+
Tyr
GTA
[ENA]
¢þ
>WENV180229009
OBCG01004158
[OBCG] human gut metagenome; human gut
63
138
+
Val
TAC
[ENA]
¢þ
>WENV180228949
OBCG01000004
[OBCG] human gut metagenome; human gut
67
141
+
Val
TAC
[ENA]
¢þ
>WENV180229030
OBCG01022171
[OBCG] human gut metagenome; human gut
72
1
-
Gln
TTG
[ENA]
¢þ
>WENV180229022
OBCG01013141
[OBCG] human gut metagenome; human gut
90
7
-
Ser
TGA
[ENA]
¢þ
>WENV180229017
OBCG01007669
[OBCG] human gut metagenome; human gut
100
174
+
Ala
TGC
[ENA]
¢þ
>WENV180229005
OBCG01001740
[OBCG] human gut metagenome; human gut
112
40
-
Thr
AGT
[ENA]
¢þ
>WENV180229027
OBCG01021589
[OBCG] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180229004
OBCG01001550
[OBCG] human gut metagenome; human gut
130
60
-
Gly
CCC
[ENA]
¢þ
>WENV180229026
OBCG01021465
[OBCG] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180228980
OBCG01000034
[OBCG] human gut metagenome; human gut
144
69
-
Asp
GTC
[ENA]
¢þ
>WENV180229025
OBCG01021206
[OBCG] human gut metagenome; human gut
145
72
-
Pro
TGG
[ENA]
¢þ
>WENV180229010
OBCG01004158
[OBCG] human gut metagenome; human gut
145
220
+
Thr
TGT
[ENA]
¢þ
>WENV180228950
OBCG01000004
[OBCG] human gut metagenome; human gut
146
220
+
Lys
TTT
[ENA]
¢þ
>WENV180229020
OBCG01008402
[OBCG] human gut metagenome; human gut
153
62
-
Ser
TGA
[ENA]
¢þ
>WENV180229024
OBCG01020044
[OBCG] human gut metagenome; human gut
158
85
-
Cys
GCA
[ENA]
¢þ
>WENV180228991
OBCG01000325
[OBCG] human gut metagenome; human gut
171
100
-
Ile2
CAT
[ENA]
¢þ
>WENV180228927
OBCG01000001
[OBCG] human gut metagenome; human gut
176
266
+
Ser
GGA
[ENA]
¢þ
>WENV180229023
OBCG01015747
[OBCG] human gut metagenome; human gut
188
117
-
Gln
CTG
[ENA]
¢þ
>WENV180229011
OBCG01004158
[OBCG] human gut metagenome; human gut
226
300
+
Lys
TTT
[ENA]
¢þ
>WENV180228979
OBCG01000034
[OBCG] human gut metagenome; human gut
232
159
-
fMet
CAT
[ENA]
¢þ
>WENV180229019
OBCG01008402
[OBCG] human gut metagenome; human gut
235
162
-
Ile2
CAT
[ENA]
¢þ
>WENV180228951
OBCG01000004
[OBCG] human gut metagenome; human gut
235
318
+
Leu
TAG
[ENA]
¢þ
>WENV180229021
OBCG01010693
[OBCG] human gut metagenome; human gut
257
174
-
Leu
CAA
[ENA]
¢þ
>WENV180228928
OBCG01000001
[OBCG] human gut metagenome; human gut
282
355
+
Glu
TTC
[ENA]
¢þ
>WENV180229012
OBCG01004158
[OBCG] human gut metagenome; human gut
318
392
+
Gly
GCC
[ENA]
¢þ
>WENV180228952
OBCG01000004
[OBCG] human gut metagenome; human gut
324
399
+
Thr
TGT
[ENA]
¢þ
>WENV180229018
OBCG01008402
[OBCG] human gut metagenome; human gut
336
262
-
Met
CAT
[ENA]
¢þ
>WENV180229008
OBCG01003195
[OBCG] human gut metagenome; human gut
347
273
-
Lys
TTT
[ENA]
¢þ
>WENV180228929
OBCG01000001
[OBCG] human gut metagenome; human gut
381
455
+
Val
TAC
[ENA]
¢þ
>WENV180228990
OBCG01000320
[OBCG] human gut metagenome; human gut
402
327
-
Arg
TCT
[ENA]
¢þ
>WENV180228953
OBCG01000004
[OBCG] human gut metagenome; human gut
404
475
+
Gly
GCC
[ENA]
¢þ
>WENV180229013
OBCG01004158
[OBCG] human gut metagenome; human gut
404
492
+
Leu
TAA
[ENA]
¢þ
>WENV180229006
OBCG01001749
[OBCG] human gut metagenome; human gut
432
505
+
Val
CAC
[ENA]
¢þ
>WENV180229002
OBCG01001166
[OBCG] human gut metagenome; human gut
437
342
-
Arg
ACG
[ENA]
¢þ
>WENV180228930
OBCG01000001
[OBCG] human gut metagenome; human gut
465
540
+
Asp
GTC
[ENA]
¢þ
>WENV180228954
OBCG01000004
[OBCG] human gut metagenome; human gut
491
576
+
Leu
TAA
[ENA]
¢þ
>WENV180229014
OBCG01004158
[OBCG] human gut metagenome; human gut
505
581
+
Arg
ACG
[ENA]
¢þ
>WENV180228931
OBCG01000001
[OBCG] human gut metagenome; human gut
586
658
+
Phe
GAA
[ENA]
¢þ
>WENV180228955
OBCG01000004
[OBCG] human gut metagenome; human gut
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV180229015
OBCG01004158
[OBCG] human gut metagenome; human gut
608
681
+
Pro
TGG
[ENA]
¢þ
>WENV180228932
OBCG01000001
[OBCG] human gut metagenome; human gut
663
745
+
Tyr
GTA
[ENA]
¢þ
>WENV180228933
OBCG01000001
[OBCG] human gut metagenome; human gut
749
822
+
Trp
CCA
[ENA]
¢þ
>WENV180228956
OBCG01000004
[OBCG] human gut metagenome; human gut
754
827
+
Pro
TGG
[ENA]
¢þ
>WENV180228934
OBCG01000001
[OBCG] human gut metagenome; human gut
859
932
+
His
GTG
[ENA]
¢þ
>WENV180228935
OBCG01000001
[OBCG] human gut metagenome; human gut
945
1018
+
Gln
TTG
[ENA]
¢þ
>WENV180228936
OBCG01000001
[OBCG] human gut metagenome; human gut
1043
1113
+
Cys
GCA
[ENA]
¢þ
>WENV180229003
OBCG01001187
[OBCG] human gut metagenome; human gut
1103
1175
+
Gly
TCC
[ENA]
¢þ
>WENV180228937
OBCG01000001
[OBCG] human gut metagenome; human gut
1126
1211
+
Leu
CAA
[ENA]
¢þ
>WENV180229007
OBCG01002067
[OBCG] human gut metagenome; human gut
1296
1379
+
Ser
AGA
[ENA]
¢þ
>WENV180228999
OBCG01000573
[OBCG] human gut metagenome; human gut
1357
1430
+
Asp
GTC
[ENA]
¢þ
>WENV180228969
OBCG01000007
[OBCG] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180229000
OBCG01000573
[OBCG] human gut metagenome; human gut
1512
1585
+
Asp
GTC
[ENA]
¢þ
>WENV180228988
OBCG01000276
[OBCG] human gut metagenome; human gut
1545
1615
+
Ala
TGC
[ENA]
¢þ
>WENV180228998
OBCG01000435
[OBCG] human gut metagenome; human gut
1635
1561
-
Lys
TTT
[ENA]
¢þ
>WENV180228992
OBCG01000400
[OBCG] human gut metagenome; human gut
2025
1951
-
Ala
AGC
[ENA]
¢þ
>WENV180228984
OBCG01000098
[OBCG] human gut metagenome; human gut
2063
1992
-
Asp
GTC
[ENA]
¢þ
>WENV180229001
OBCG01000984
[OBCG] human gut metagenome; human gut
2081
2006
-
Val
AAC
[ENA]
¢þ
>WENV180228995
OBCG01000415
[OBCG] human gut metagenome; human gut
2177
2107
-
Phe
GAA
[ENA]
¢þ
>WENV180228994
OBCG01000415
[OBCG] human gut metagenome; human gut
2249
2175
-
Sup
TCA
[ENA]
¢þ
>WENV180228996
OBCG01000435
[OBCG] human gut metagenome; human gut
2310
2391
+
Leu
TAA
[ENA]
¢þ
>WENV180228989
OBCG01000276
[OBCG] human gut metagenome; human gut
2375
2445
+
Asn
GTT
[ENA]
¢þ
>WENV180228993
OBCG01000415
[OBCG] human gut metagenome; human gut
2410
2340
-
Arg
TCT
[ENA]
¢þ
>WENV180228997
OBCG01000435
[OBCG] human gut metagenome; human gut
2565
2637
+
Thr
TGT
[ENA]
¢þ
>WENV180228983
OBCG01000082
[OBCG] human gut metagenome; human gut
2831
2757
-
Met
CAT
[ENA]
¢þ
>WENV180228982
OBCG01000067
[OBCG] human gut metagenome; human gut
3036
3107
+
Met
CAT
[ENA]
¢þ
>WENV180228985
OBCG01000132
[OBCG] human gut metagenome; human gut
3516
3588
+
Gly
TCC
[ENA]
¢þ
>WENV180228986
OBCG01000132
[OBCG] human gut metagenome; human gut
3750
3824
+
Pro
TGG
[ENA]
¢þ
>WENV180228987
OBCG01000132
[OBCG] human gut metagenome; human gut
4958
5030
+
Ile
GAT
[ENA]
¢þ
>WENV180228972
OBCG01000012
[OBCG] human gut metagenome; human gut
7294
7202
-
Ser
TGA
[ENA]
¢þ
>WENV180228981
OBCG01000048
[OBCG] human gut metagenome; human gut
14723
14633
-
Ser
GGA
[ENA]
¢þ
>WENV180228976
OBCG01000016
[OBCG] human gut metagenome; human gut
19934
20005
+
Arg
CCG
[ENA]
¢þ
>WENV180228977
OBCG01000022
[OBCG] human gut metagenome; human gut
47316
47390
+
Glu
TTC
[ENA]
¢þ
>WENV180228978
OBCG01000022
[OBCG] human gut metagenome; human gut
47396
47468
+
Asp
GTC
[ENA]
¢þ
>WENV180228970
OBCG01000010
[OBCG] human gut metagenome; human gut
51485
51559
+
Asn
GTT
[ENA]
¢þ
>WENV180228971
OBCG01000010
[OBCG] human gut metagenome; human gut
51562
51652
+
Ser
GCT
[ENA]
¢þ
>WENV180228941
OBCG01000002
[OBCG] human gut metagenome; human gut
77610
77682
+
Thr
GGT
[ENA]
¢þ
>WENV180228945
OBCG01000003
[OBCG] human gut metagenome; human gut
81335
81410
+
Ile2
CAT
[ENA]
¢þ
>WENV180228974
OBCG01000015
[OBCG] human gut metagenome; human gut
82126
82212
+
Leu
GAG
[ENA]
¢þ
>WENV180228975
OBCG01000015
[OBCG] human gut metagenome; human gut
82234
82307
+
Gly
TCC
[ENA]
¢þ
>WENV180228968
OBCG01000007
[OBCG] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180228957
OBCG01000006
[OBCG] human gut metagenome; human gut
168108
168182
+
Arg
TCT
[ENA]
¢þ
>WENV180228967
OBCG01000007
[OBCG] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180228966
OBCG01000007
[OBCG] human gut metagenome; human gut
193286
193197
-
Ser
GCT
[ENA]
¢þ
>WENV180228965
OBCG01000007
[OBCG] human gut metagenome; human gut
193369
193296
-
Ile
GAT
[ENA]
¢þ
>WENV180228964
OBCG01000007
[OBCG] human gut metagenome; human gut
193453
193383
-
Gly
TCC
[ENA]
¢þ
>WENV180228963
OBCG01000007
[OBCG] human gut metagenome; human gut
193541
193464
-
Phe
GAA
[ENA]
¢þ
>WENV180228962
OBCG01000007
[OBCG] human gut metagenome; human gut
193619
193545
-
Asp
GTC
[ENA]
¢þ
>WENV180228961
OBCG01000007
[OBCG] human gut metagenome; human gut
193732
193657
-
fMet
CAT
[ENA]
¢þ
>WENV180228960
OBCG01000007
[OBCG] human gut metagenome; human gut
193854
193765
-
Ser
TGA
[ENA]
¢þ
>WENV180228959
OBCG01000007
[OBCG] human gut metagenome; human gut
193962
193887
-
Ile2
CAT
[ENA]
¢þ
>WENV180228958
OBCG01000007
[OBCG] human gut metagenome; human gut
194056
193981
-
Met
CAT
[ENA]
¢þ
>WENV180228938
OBCG01000001
[OBCG] human gut metagenome; human gut
254438
254524
+
Leu
GAG
[ENA]
¢þ
>WENV180228939
OBCG01000001
[OBCG] human gut metagenome; human gut
265771
265853
+
Tyr
GTA
[ENA]
¢þ
>WENV180228940
OBCG01000001
[OBCG] human gut metagenome; human gut
265861
265934
+
Gln
TTG
[ENA]
¢þ
>WENV180228948
OBCG01000003
[OBCG] human gut metagenome; human gut
304514
304441
-
Arg
CCG
[ENA]
¢þ
>WENV180228944
OBCG01000002
[OBCG] human gut metagenome; human gut
364317
364245
-
Thr
CGT
[ENA]
¢þ
>WENV180228947
OBCG01000003
[OBCG] human gut metagenome; human gut
496292
496217
-
Arg
TCT
[ENA]
¢þ
>WENV180228946
OBCG01000003
[OBCG] human gut metagenome; human gut
547049
547124
+
Arg
CCT
[ENA]
¢þ
>WENV180228943
OBCG01000002
[OBCG] human gut metagenome; human gut
602998
602909
-
Ser
CGA
[ENA]
¢þ
>WENV180228942
OBCG01000002
[OBCG] human gut metagenome; human gut
637282
637207
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK