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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OBCJ] human gut metagenome; human gut
HIT:
68 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180229923
OBCJ01001085
[OBCJ] human gut metagenome; human gut
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV180229926
OBCJ01001099
[OBCJ] human gut metagenome; human gut
1
90
+
Ser
TGA
[ENA]
¢þ
>WENV180229938
OBCJ01004025
[OBCJ] human gut metagenome; human gut
5
79
+
Val
TAC
[ENA]
¢þ
>WENV180229893
OBCJ01000019
[OBCJ] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV180229936
OBCJ01002922
[OBCJ] human gut metagenome; human gut
62
136
+
Asn
GTT
[ENA]
¢þ
>WENV180229934
OBCJ01002422
[OBCJ] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV180229933
OBCJ01002279
[OBCJ] human gut metagenome; human gut
66
149
+
Ser
AGA
[ENA]
¢þ
>WENV180229910
OBCJ01000454
[OBCJ] human gut metagenome; human gut
67
150
+
Tyr
GTA
[ENA]
¢þ
>WENV180229921
OBCJ01001031
[OBCJ] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV180229939
OBCJ01004143
[OBCJ] human gut metagenome; human gut
77
2
-
Thr
TGT
[ENA]
¢þ
>WENV180229937
OBCJ01003001
[OBCJ] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180229924
OBCJ01001085
[OBCJ] human gut metagenome; human gut
87
175
+
Leu
TAA
[ENA]
¢þ
>WENV180229932
OBCJ01002263
[OBCJ] human gut metagenome; human gut
108
25
-
Leu
CAA
[ENA]
¢þ
>WENV180229927
OBCJ01001099
[OBCJ] human gut metagenome; human gut
123
198
+
fMet
CAT
[ENA]
¢þ
>WENV180229931
OBCJ01002081
[OBCJ] human gut metagenome; human gut
138
212
+
Arg
TCT
[ENA]
¢þ
>WENV180229935
OBCJ01002867
[OBCJ] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180229916
OBCJ01000733
[OBCJ] human gut metagenome; human gut
146
216
+
Arg
TCT
[ENA]
¢þ
>WENV180229894
OBCJ01000019
[OBCJ] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV180229911
OBCJ01000454
[OBCJ] human gut metagenome; human gut
155
229
+
Gln
TTG
[ENA]
¢þ
>WENV180229930
OBCJ01001622
[OBCJ] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180229922
OBCJ01001031
[OBCJ] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV180229929
OBCJ01001589
[OBCJ] human gut metagenome; human gut
174
103
-
Met
CAT
[ENA]
¢þ
>WENV180229925
OBCJ01001085
[OBCJ] human gut metagenome; human gut
188
262
+
Arg
ACG
[ENA]
¢þ
>WENV180229920
OBCJ01001012
[OBCJ] human gut metagenome; human gut
228
157
-
Asp
GTC
[ENA]
¢þ
>WENV180229912
OBCJ01000454
[OBCJ] human gut metagenome; human gut
233
306
+
Lys
TTT
[ENA]
¢þ
>WENV180229917
OBCJ01000733
[OBCJ] human gut metagenome; human gut
235
305
+
Val
TAC
[ENA]
¢þ
>WENV180229895
OBCJ01000019
[OBCJ] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV180229928
OBCJ01001099
[OBCJ] human gut metagenome; human gut
245
320
+
Asp
GTC
[ENA]
¢þ
>WENV180229918
OBCJ01000733
[OBCJ] human gut metagenome; human gut
307
381
+
Sup
TCA
[ENA]
¢þ
>WENV180229915
OBCJ01000682
[OBCJ] human gut metagenome; human gut
315
245
-
Asn
GTT
[ENA]
¢þ
>WENV180229896
OBCJ01000019
[OBCJ] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV180229919
OBCJ01000733
[OBCJ] human gut metagenome; human gut
379
449
+
Phe
GAA
[ENA]
¢þ
>WENV180229897
OBCJ01000019
[OBCJ] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV180229898
OBCJ01000019
[OBCJ] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV180229914
OBCJ01000586
[OBCJ] human gut metagenome; human gut
506
414
-
Ser
TGA
[ENA]
¢þ
>WENV180229899
OBCJ01000019
[OBCJ] human gut metagenome; human gut
667
740
+
Pro
TGG
[ENA]
¢þ
>WENV180229906
OBCJ01000199
[OBCJ] human gut metagenome; human gut
773
683
-
Ser
GGA
[ENA]
¢þ
>WENV180229913
OBCJ01000468
[OBCJ] human gut metagenome; human gut
874
800
-
Lys
TTT
[ENA]
¢þ
>WENV180229905
OBCJ01000199
[OBCJ] human gut metagenome; human gut
898
825
-
Glu
TTC
[ENA]
¢þ
>WENV180229909
OBCJ01000446
[OBCJ] human gut metagenome; human gut
969
1041
+
Ile
GAT
[ENA]
¢þ
>WENV180229904
OBCJ01000199
[OBCJ] human gut metagenome; human gut
985
912
-
Ile
GAT
[ENA]
¢þ
>WENV180229903
OBCJ01000199
[OBCJ] human gut metagenome; human gut
1069
999
-
Gly
TCC
[ENA]
¢þ
>WENV180229902
OBCJ01000199
[OBCJ] human gut metagenome; human gut
1334
1261
-
fMet
CAT
[ENA]
¢þ
>WENV180229908
OBCJ01000398
[OBCJ] human gut metagenome; human gut
1485
1410
-
Leu
TAG
[ENA]
¢þ
>WENV180229907
OBCJ01000398
[OBCJ] human gut metagenome; human gut
1574
1494
-
Ser
TGA
[ENA]
¢þ
>WENV180229901
OBCJ01000102
[OBCJ] human gut metagenome; human gut
7587
7513
-
Arg
TCT
[ENA]
¢þ
>WENV180229891
OBCJ01000012
[OBCJ] human gut metagenome; human gut
17186
17113
-
Ile2
CAT
[ENA]
¢þ
>WENV180229900
OBCJ01000024
[OBCJ] human gut metagenome; human gut
31204
31133
-
Arg
CCG
[ENA]
¢þ
>WENV180229874
OBCJ01000001
[OBCJ] human gut metagenome; human gut
38841
38766
-
Arg
CCT
[ENA]
¢þ
>WENV180229879
OBCJ01000007
[OBCJ] human gut metagenome; human gut
61416
61343
-
Gln
TTG
[ENA]
¢þ
>WENV180229878
OBCJ01000007
[OBCJ] human gut metagenome; human gut
61506
61424
-
Tyr
GTA
[ENA]
¢þ
>WENV180229892
OBCJ01000014
[OBCJ] human gut metagenome; human gut
65382
65456
+
Lys
CTT
[ENA]
¢þ
>WENV180229875
OBCJ01000005
[OBCJ] human gut metagenome; human gut
67061
67133
+
Thr
GGT
[ENA]
¢þ
>WENV180229877
OBCJ01000007
[OBCJ] human gut metagenome; human gut
72839
72753
-
Leu
GAG
[ENA]
¢þ
>WENV180229872
OBCJ01000001
[OBCJ] human gut metagenome; human gut
89598
89673
+
Arg
TCT
[ENA]
¢þ
>WENV180229890
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96268
96183
-
Leu
CAA
[ENA]
¢þ
>WENV180229889
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96351
96281
-
Cys
GCA
[ENA]
¢þ
>WENV180229888
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96449
96376
-
Gln
TTG
[ENA]
¢þ
>WENV180229887
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96535
96462
-
His
GTG
[ENA]
¢þ
>WENV180229886
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96645
96572
-
Trp
CCA
[ENA]
¢þ
>WENV180229885
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96731
96649
-
Tyr
GTA
[ENA]
¢þ
>WENV180229884
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96808
96736
-
Phe
GAA
[ENA]
¢þ
>WENV180229883
OBCJ01000011
[OBCJ] human gut metagenome; human gut
96929
96854
-
Asp
GTC
[ENA]
¢þ
>WENV180229882
OBCJ01000009
[OBCJ] human gut metagenome; human gut
108499
108410
-
Ser
CGA
[ENA]
¢þ
>WENV180229876
OBCJ01000006
[OBCJ] human gut metagenome; human gut
124148
124076
-
Thr
CGT
[ENA]
¢þ
>WENV180229880
OBCJ01000008
[OBCJ] human gut metagenome; human gut
136413
136338
-
Ile2
CAT
[ENA]
¢þ
>WENV180229881
OBCJ01000009
[OBCJ] human gut metagenome; human gut
142783
142708
-
Asn
GTT
[ENA]
¢þ
>WENV180229873
OBCJ01000001
[OBCJ] human gut metagenome; human gut
281376
281449
+
Arg
CCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK