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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OBCK] human gut metagenome; human gut
HIT:
132 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180229955
OBCK01000003
[OBCK] human gut metagenome; human gut
1
74
+
Pro
TGG
[ENA]
¢þ
>WENV180229992
OBCK01000097
[OBCK] human gut metagenome; human gut
1
89
+
Ser
GCT
[ENA]
¢þ
>WENV180230045
OBCK01002195
[OBCK] human gut metagenome; human gut
1
90
+
Ser
TGA
[ENA]
¢þ
>WENV180230065
OBCK01004025
[OBCK] human gut metagenome; human gut
2
72
+
Gly
TCC
[ENA]
¢þ
>WENV180230071
OBCK01004240
[OBCK] human gut metagenome; human gut
3
76
+
His
GTG
[ENA]
¢þ
>WENV180230069
OBCK01004046
[OBCK] human gut metagenome; human gut
3
77
+
Gly
GCC
[ENA]
¢þ
>WENV180230042
OBCK01001815
[OBCK] human gut metagenome; human gut
23
97
+
Lys
TTT
[ENA]
¢þ
>WENV180230051
OBCK01002405
[OBCK] human gut metagenome; human gut
40
125
+
Tyr
GTA
[ENA]
¢þ
>WENV180230035
OBCK01001417
[OBCK] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV180230068
OBCK01004044
[OBCK] human gut metagenome; human gut
61
134
+
Cys
GCA
[ENA]
¢þ
>WENV180229978
OBCK01000063
[OBCK] human gut metagenome; human gut
62
136
+
Asn
GTT
[ENA]
¢þ
>WENV180230058
OBCK01003627
[OBCK] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV180230056
OBCK01002927
[OBCK] human gut metagenome; human gut
66
140
+
Glu
TTC
[ENA]
¢þ
>WENV180230061
OBCK01004007
[OBCK] human gut metagenome; human gut
74
1
-
Ala
GGC
[ENA]
¢þ
>WENV180230059
OBCK01003964
[OBCK] human gut metagenome; human gut
74
149
+
Lys
TTT
[ENA]
¢þ
>WENV180230067
OBCK01004035
[OBCK] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV180230043
OBCK01002101
[OBCK] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV180230032
OBCK01001030
[OBCK] human gut metagenome; human gut
77
2
-
Asn
GTT
[ENA]
¢þ
>WENV180230070
OBCK01004212
[OBCK] human gut metagenome; human gut
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV180230002
OBCK01000231
[OBCK] human gut metagenome; human gut
80
153
+
Arg
ACG
[ENA]
¢þ
>WENV180230066
OBCK01004025
[OBCK] human gut metagenome; human gut
86
159
+
Ile
GAT
[ENA]
¢þ
>WENV180229943
OBCK01000002
[OBCK] human gut metagenome; human gut
89
163
+
Val
TAC
[ENA]
¢þ
>WENV180230050
OBCK01002242
[OBCK] human gut metagenome; human gut
96
179
+
Leu
CAA
[ENA]
¢þ
>WENV180230064
OBCK01004022
[OBCK] human gut metagenome; human gut
104
30
-
Gln
TTG
[ENA]
¢þ
>WENV180230041
OBCK01001685
[OBCK] human gut metagenome; human gut
117
207
+
Ser
GCT
[ENA]
¢þ
>WENV180230009
OBCK01000284
[OBCK] human gut metagenome; human gut
119
209
+
Ser
GGA
[ENA]
¢þ
>WENV180230034
OBCK01001196
[OBCK] human gut metagenome; human gut
122
49
-
Ala
TGC
[ENA]
¢þ
>WENV180230046
OBCK01002195
[OBCK] human gut metagenome; human gut
123
198
+
fMet
CAT
[ENA]
¢þ
>WENV180230054
OBCK01002709
[OBCK] human gut metagenome; human gut
126
199
+
Asn
GTT
[ENA]
¢þ
>WENV180230053
OBCK01002450
[OBCK] human gut metagenome; human gut
127
213
+
Leu
GAG
[ENA]
¢þ
>WENV180230063
OBCK01004012
[OBCK] human gut metagenome; human gut
129
56
-
Trp
CCA
[ENA]
¢þ
>WENV180229979
OBCK01000063
[OBCK] human gut metagenome; human gut
137
210
+
Glu
TTC
[ENA]
¢þ
>WENV180230049
OBCK01002241
[OBCK] human gut metagenome; human gut
138
65
-
Ile2
CAT
[ENA]
¢þ
>WENV180230062
OBCK01004011
[OBCK] human gut metagenome; human gut
139
56
-
Leu
TAG
[ENA]
¢þ
>WENV180230060
OBCK01004006
[OBCK] human gut metagenome; human gut
141
59
-
Leu
TAG
[ENA]
¢þ
>WENV180230057
OBCK01002927
[OBCK] human gut metagenome; human gut
144
221
+
Val
TAC
[ENA]
¢þ
>WENV180230036
OBCK01001417
[OBCK] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV180230052
OBCK01002405
[OBCK] human gut metagenome; human gut
149
223
+
Gly
GCC
[ENA]
¢þ
>WENV180229987
OBCK01000071
[OBCK] human gut metagenome; human gut
152
77
-
Asp
GTC
[ENA]
¢þ
>WENV180230055
OBCK01002881
[OBCK] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV180230044
OBCK01002101
[OBCK] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV180229944
OBCK01000002
[OBCK] human gut metagenome; human gut
173
248
+
Asp
GTC
[ENA]
¢þ
>WENV180230033
OBCK01001047
[OBCK] human gut metagenome; human gut
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180229980
OBCK01000063
[OBCK] human gut metagenome; human gut
216
291
+
Val
TAC
[ENA]
¢þ
>WENV180229986
OBCK01000071
[OBCK] human gut metagenome; human gut
235
162
-
fMet
CAT
[ENA]
¢þ
>WENV180230037
OBCK01001417
[OBCK] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV180230048
OBCK01002241
[OBCK] human gut metagenome; human gut
239
165
-
Met
CAT
[ENA]
¢þ
>WENV180230047
OBCK01002195
[OBCK] human gut metagenome; human gut
245
320
+
Asp
GTC
[ENA]
¢þ
>WENV180229945
OBCK01000002
[OBCK] human gut metagenome; human gut
294
366
+
Phe
GAA
[ENA]
¢þ
>WENV180229981
OBCK01000063
[OBCK] human gut metagenome; human gut
308
391
+
Tyr
GTA
[ENA]
¢þ
>WENV180230038
OBCK01001417
[OBCK] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV180230029
OBCK01000756
[OBCK] human gut metagenome; human gut
329
403
+
Arg
CCT
[ENA]
¢þ
>WENV180230040
OBCK01001509
[OBCK] human gut metagenome; human gut
338
424
+
Leu
GAG
[ENA]
¢þ
>WENV180229989
OBCK01000082
[OBCK] human gut metagenome; human gut
350
433
+
Leu
CAA
[ENA]
¢þ
>WENV180229946
OBCK01000002
[OBCK] human gut metagenome; human gut
371
453
+
Tyr
GTA
[ENA]
¢þ
>WENV180229982
OBCK01000063
[OBCK] human gut metagenome; human gut
396
470
+
Gln
TTG
[ENA]
¢þ
>WENV180230030
OBCK01000985
[OBCK] human gut metagenome; human gut
398
470
+
Gln
CTG
[ENA]
¢þ
>WENV180230039
OBCK01001417
[OBCK] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV180229947
OBCK01000002
[OBCK] human gut metagenome; human gut
457
530
+
Trp
CCA
[ENA]
¢þ
>WENV180229983
OBCK01000063
[OBCK] human gut metagenome; human gut
474
547
+
Lys
TTT
[ENA]
¢þ
>WENV180230011
OBCK01000336
[OBCK] human gut metagenome; human gut
496
423
-
Trp
CCA
[ENA]
¢þ
>WENV180229948
OBCK01000002
[OBCK] human gut metagenome; human gut
567
640
+
His
GTG
[ENA]
¢þ
>WENV180230023
OBCK01000648
[OBCK] human gut metagenome; human gut
602
528
-
Pro
GGG
[ENA]
¢þ
>WENV180230031
OBCK01000985
[OBCK] human gut metagenome; human gut
606
681
+
Glu
CTC
[ENA]
¢þ
>WENV180230028
OBCK01000684
[OBCK] human gut metagenome; human gut
644
570
-
Val
GAC
[ENA]
¢þ
>WENV180229949
OBCK01000002
[OBCK] human gut metagenome; human gut
653
726
+
Gln
TTG
[ENA]
¢þ
>WENV180230024
OBCK01000659
[OBCK] human gut metagenome; human gut
684
758
+
Ile2
CAT
[ENA]
¢þ
>WENV180230027
OBCK01000684
[OBCK] human gut metagenome; human gut
716
645
-
Cys
GCA
[ENA]
¢þ
>WENV180229950
OBCK01000002
[OBCK] human gut metagenome; human gut
751
821
+
Cys
GCA
[ENA]
¢þ
>WENV180230017
OBCK01000562
[OBCK] human gut metagenome; human gut
759
840
+
Tyr
GTA
[ENA]
¢þ
>WENV180230026
OBCK01000684
[OBCK] human gut metagenome; human gut
817
744
-
Gly
GCC
[ENA]
¢þ
>WENV180229951
OBCK01000002
[OBCK] human gut metagenome; human gut
834
919
+
Leu
CAA
[ENA]
¢þ
>WENV180230021
OBCK01000632
[OBCK] human gut metagenome; human gut
994
910
-
Leu
CAA
[ENA]
¢þ
>WENV180229999
OBCK01000207
[OBCK] human gut metagenome; human gut
1004
1077
+
Thr
CGT
[ENA]
¢þ
>WENV180230018
OBCK01000562
[OBCK] human gut metagenome; human gut
1045
1118
+
Thr
GGT
[ENA]
¢þ
>WENV180229997
OBCK01000192
[OBCK] human gut metagenome; human gut
1090
1019
-
Gly
CCC
[ENA]
¢þ
>WENV180230020
OBCK01000621
[OBCK] human gut metagenome; human gut
1118
1193
+
His
GTG
[ENA]
¢þ
>WENV180230019
OBCK01000562
[OBCK] human gut metagenome; human gut
1181
1255
+
Met
CAT
[ENA]
¢þ
>WENV180230022
OBCK01000636
[OBCK] human gut metagenome; human gut
1196
1282
+
Ser
CGA
[ENA]
¢þ
>WENV180230025
OBCK01000684
[OBCK] human gut metagenome; human gut
1315
1389
+
Val
CAC
[ENA]
¢þ
>WENV180230016
OBCK01000553
[OBCK] human gut metagenome; human gut
1474
1400
-
Ala
CGC
[ENA]
¢þ
>WENV180229962
OBCK01000007
[OBCK] human gut metagenome; human gut
1484
1410
-
Lys
CTT
[ENA]
¢þ
>WENV180230015
OBCK01000464
[OBCK] human gut metagenome; human gut
1539
1468
-
Gly
TCC
[ENA]
¢þ
>WENV180230007
OBCK01000257
[OBCK] human gut metagenome; human gut
1710
1793
+
Leu
CAG
[ENA]
¢þ
>WENV180230008
OBCK01000262
[OBCK] human gut metagenome; human gut
2191
2276
+
Ser
GGA
[ENA]
¢þ
>WENV180230013
OBCK01000433
[OBCK] human gut metagenome; human gut
2456
2383
-
Arg
CCG
[ENA]
¢þ
>WENV180230014
OBCK01000464
[OBCK] human gut metagenome; human gut
2468
2394
-
Pro
TGG
[ENA]
¢þ
>WENV180230010
OBCK01000309
[OBCK] human gut metagenome; human gut
2656
2732
+
Ile
GAT
[ENA]
¢þ
>WENV180230012
OBCK01000385
[OBCK] human gut metagenome; human gut
2763
2680
-
Leu
TAG
[ENA]
¢þ
>WENV180229996
OBCK01000168
[OBCK] human gut metagenome; human gut
3122
3207
+
Ser
TGA
[ENA]
¢þ
>WENV180230006
OBCK01000247
[OBCK] human gut metagenome; human gut
3226
3152
-
Leu
TAA
[ENA]
¢þ
>WENV180230005
OBCK01000238
[OBCK] human gut metagenome; human gut
3599
3522
-
Phe
GAA
[ENA]
¢þ
>WENV180230004
OBCK01000238
[OBCK] human gut metagenome; human gut
3733
3659
-
Asp
GTC
[ENA]
¢þ
>WENV180230003
OBCK01000238
[OBCK] human gut metagenome; human gut
4168
4095
-
Glu
TTC
[ENA]
¢þ
>WENV180229998
OBCK01000205
[OBCK] human gut metagenome; human gut
4408
4334
-
Lys
CTT
[ENA]
¢þ
>WENV180230001
OBCK01000220
[OBCK] human gut metagenome; human gut
4693
4614
-
Gln
TTG
[ENA]
¢þ
>WENV180230000
OBCK01000211
[OBCK] human gut metagenome; human gut
6304
6380
+
fMet
CAT
[ENA]
¢þ
>WENV180229993
OBCK01000109
[OBCK] human gut metagenome; human gut
6924
6848
-
Pro
CGG
[ENA]
¢þ
>WENV180229988
OBCK01000073
[OBCK] human gut metagenome; human gut
9083
9011
-
Arg
CCG
[ENA]
¢þ
>WENV180229971
OBCK01000050
[OBCK] human gut metagenome; human gut
9265
9173
-
Ser
TGA
[ENA]
¢þ
>WENV180229995
OBCK01000151
[OBCK] human gut metagenome; human gut
9829
9902
+
fMet
CAT
[ENA]
¢þ
>WENV180229990
OBCK01000083
[OBCK] human gut metagenome; human gut
10245
10319
+
Glu
TTC
[ENA]
¢þ
>WENV180229991
OBCK01000083
[OBCK] human gut metagenome; human gut
10327
10399
+
Asp
GTC
[ENA]
¢þ
>WENV180229994
OBCK01000121
[OBCK] human gut metagenome; human gut
14308
14218
-
Ser
GCT
[ENA]
¢þ
>WENV180229959
OBCK01000006
[OBCK] human gut metagenome; human gut
14800
14725
-
Arg
CCT
[ENA]
¢þ
>WENV180229985
OBCK01000066
[OBCK] human gut metagenome; human gut
32413
32340
-
Lys
TTT
[ENA]
¢þ
>WENV180229984
OBCK01000065
[OBCK] human gut metagenome; human gut
33495
33587
+
Ser
TGA
[ENA]
¢þ
>WENV180229940
OBCK01000001
[OBCK] human gut metagenome; human gut
34263
34352
+
Ser
CGA
[ENA]
¢þ
>WENV180229972
OBCK01000054
[OBCK] human gut metagenome; human gut
38936
39011
+
Val
TAC
[ENA]
¢þ
>WENV180229973
OBCK01000054
[OBCK] human gut metagenome; human gut
39018
39093
+
Thr
TGT
[ENA]
¢þ
>WENV180229974
OBCK01000054
[OBCK] human gut metagenome; human gut
39099
39171
+
Lys
TTT
[ENA]
¢þ
>WENV180229975
OBCK01000054
[OBCK] human gut metagenome; human gut
39190
39264
+
Gly
GCC
[ENA]
¢þ
>WENV180229976
OBCK01000054
[OBCK] human gut metagenome; human gut
39276
39364
+
Leu
TAA
[ENA]
¢þ
>WENV180229977
OBCK01000054
[OBCK] human gut metagenome; human gut
39370
39443
+
Arg
ACG
[ENA]
¢þ
>WENV180229969
OBCK01000040
[OBCK] human gut metagenome; human gut
48569
48655
+
Leu
GAG
[ENA]
¢þ
>WENV180229970
OBCK01000040
[OBCK] human gut metagenome; human gut
48677
48750
+
Gly
TCC
[ENA]
¢þ
>WENV180229968
OBCK01000033
[OBCK] human gut metagenome; human gut
51485
51559
+
Asn
GTT
[ENA]
¢þ
>WENV180229965
OBCK01000018
[OBCK] human gut metagenome; human gut
61058
60987
-
Arg
CCG
[ENA]
¢þ
>WENV180229957
OBCK01000006
[OBCK] human gut metagenome; human gut
65557
65632
+
Arg
TCT
[ENA]
¢þ
>WENV180229966
OBCK01000024
[OBCK] human gut metagenome; human gut
68570
68644
+
Glu
TTC
[ENA]
¢þ
>WENV180229967
OBCK01000024
[OBCK] human gut metagenome; human gut
68652
68727
+
Asp
GTC
[ENA]
¢þ
>WENV180229963
OBCK01000010
[OBCK] human gut metagenome; human gut
77663
77737
+
Arg
TCT
[ENA]
¢þ
>WENV180229964
OBCK01000015
[OBCK] human gut metagenome; human gut
81661
81736
+
Arg
TCT
[ENA]
¢þ
>WENV180229961
OBCK01000007
[OBCK] human gut metagenome; human gut
120806
120733
-
Ile2
CAT
[ENA]
¢þ
>WENV180229960
OBCK01000007
[OBCK] human gut metagenome; human gut
193183
193110
-
Glu
TTC
[ENA]
¢þ
>WENV180229956
OBCK01000004
[OBCK] human gut metagenome; human gut
218699
218624
-
Ile2
CAT
[ENA]
¢þ
>WENV180229952
OBCK01000002
[OBCK] human gut metagenome; human gut
254005
254091
+
Leu
GAG
[ENA]
¢þ
>WENV180229958
OBCK01000006
[OBCK] human gut metagenome; human gut
257335
257408
+
Arg
CCG
[ENA]
¢þ
>WENV180229953
OBCK01000002
[OBCK] human gut metagenome; human gut
265338
265420
+
Tyr
GTA
[ENA]
¢þ
>WENV180229954
OBCK01000002
[OBCK] human gut metagenome; human gut
265428
265501
+
Gln
TTG
[ENA]
¢þ
>WENV180229941
OBCK01000001
[OBCK] human gut metagenome; human gut
272944
273016
+
Thr
CGT
[ENA]
¢þ
>WENV180229942
OBCK01000001
[OBCK] human gut metagenome; human gut
559651
559579
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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