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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OBCS] metagenome; diffuse fluid
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180234651
OBCS01012975
[OBCS] metagenome; diffuse fluid
8
85
+
Val
GAC
[ENA]
¢þ
>WENV180234669
OBCS01017156
[OBCS] metagenome; diffuse fluid
21
105
+
Tyr
GTA
[ENA]
¢þ
>WENV180234636
OBCS01010421
[OBCS] metagenome; diffuse fluid
32
116
+
Leu
CAG
[ENA]
¢þ
>WENV180234633
OBCS01010174
[OBCS] metagenome; diffuse fluid
35
108
+
Gln
CTG
[ENA]
¢þ
>WENV180234634
OBCS01010242
[OBCS] metagenome; diffuse fluid
35
110
+
Ala
TGC
[ENA]
¢þ
>WENV180234602
OBCS01002464
[OBCS] metagenome; diffuse fluid
36
112
+
Pro
TGG
[ENA]
¢þ
>WENV180234619
OBCS01007579
[OBCS] metagenome; diffuse fluid
36
120
+
Leu
TAG
[ENA]
¢þ
>WENV180234632
OBCS01010133
[OBCS] metagenome; diffuse fluid
58
132
+
Val
CAC
[ENA]
¢þ
>WENV180234655
OBCS01013370
[OBCS] metagenome; diffuse fluid
58
134
+
Arg
CCT
[ENA]
¢þ
>WENV180234609
OBCS01003275
[OBCS] metagenome; diffuse fluid
61
145
+
Leu
CAA
[ENA]
¢þ
>WENV180234638
OBCS01010790
[OBCS] metagenome; diffuse fluid
64
149
+
Leu
TAA
[ENA]
¢þ
>WENV180234668
OBCS01015790
[OBCS] metagenome; diffuse fluid
66
140
+
Val
CAC
[ENA]
¢þ
>WENV180234640
OBCS01010882
[OBCS] metagenome; diffuse fluid
71
144
+
Ala
TGC
[ENA]
¢þ
>WENV180234657
OBCS01013556
[OBCS] metagenome; diffuse fluid
71
155
+
Ser
TGA
[ENA]
¢þ
>WENV180234627
OBCS01009730
[OBCS] metagenome; diffuse fluid
74
150
+
Arg
CCT
[ENA]
¢þ
>WENV180234647
OBCS01011962
[OBCS] metagenome; diffuse fluid
77
153
+
Pro
CGG
[ENA]
¢þ
>WENV180234653
OBCS01013203
[OBCS] metagenome; diffuse fluid
81
156
+
Ala
TGC
[ENA]
¢þ
>WENV180234672
OBCS01018082
[OBCS] metagenome; diffuse fluid
84
157
+
Gln
CTG
[ENA]
¢þ
>WENV180234629
OBCS01010061
[OBCS] metagenome; diffuse fluid
88
10
-
Asn
GTT
[ENA]
¢þ
>WENV180234673
OBCS01018161
[OBCS] metagenome; diffuse fluid
88
163
+
Thr
GGT
[ENA]
¢þ
>WENV180234612
OBCS01004439
[OBCS] metagenome; diffuse fluid
89
160
+
His
GTG
[ENA]
¢þ
>WENV180234597
OBCS01001362
[OBCS] metagenome; diffuse fluid
92
18
-
Ile
GAT
[ENA]
¢þ
>WENV180234659
OBCS01014157
[OBCS] metagenome; diffuse fluid
93
19
-
Gln
TTG
[ENA]
¢þ
>WENV180234671
OBCS01017708
[OBCS] metagenome; diffuse fluid
93
177
+
Tyr
GTA
[ENA]
¢þ
>WENV180234643
OBCS01011319
[OBCS] metagenome; diffuse fluid
95
170
+
Gly
GCC
[ENA]
¢þ
>WENV180234650
OBCS01012761
[OBCS] metagenome; diffuse fluid
98
172
+
Lys
CTT
[ENA]
¢þ
>WENV180234631
OBCS01010094
[OBCS] metagenome; diffuse fluid
98
173
+
Phe
GAA
[ENA]
¢þ
>WENV180234622
OBCS01008236
[OBCS] metagenome; diffuse fluid
98
174
+
fMet
CAT
[ENA]
¢þ
>WENV180234642
OBCS01011297
[OBCS] metagenome; diffuse fluid
100
27
-
Ala
GGC
[ENA]
¢þ
>WENV180234648
OBCS01012118
[OBCS] metagenome; diffuse fluid
100
176
+
Ile
GAT
[ENA]
¢þ
>WENV180234674
OBCS01018801
[OBCS] metagenome; diffuse fluid
101
26
-
Lys
TTT
[ENA]
¢þ
>WENV180234595
OBCS01001294
[OBCS] metagenome; diffuse fluid
101
176
+
Val
TAC
[ENA]
¢þ
>WENV180234621
OBCS01007950
[OBCS] metagenome; diffuse fluid
102
186
+
Leu
TAG
[ENA]
¢þ
>WENV180234665
OBCS01015111
[OBCS] metagenome; diffuse fluid
103
177
+
Ala
GGC
[ENA]
¢þ
>WENV180234628
OBCS01010023
[OBCS] metagenome; diffuse fluid
112
188
+
Lys
CTT
[ENA]
¢þ
>WENV180234644
OBCS01011348
[OBCS] metagenome; diffuse fluid
113
31
-
Leu
CAA
[ENA]
¢þ
>WENV180234667
OBCS01015460
[OBCS] metagenome; diffuse fluid
117
41
-
Ala
CGC
[ENA]
¢þ
>WENV180234620
OBCS01007923
[OBCS] metagenome; diffuse fluid
118
47
-
Ala
CGC
[ENA]
¢þ
>WENV180234670
OBCS01017508
[OBCS] metagenome; diffuse fluid
119
205
+
Leu
CAA
[ENA]
¢þ
>WENV180234646
OBCS01011857
[OBCS] metagenome; diffuse fluid
121
45
-
Val
TAC
[ENA]
¢þ
>WENV180234661
OBCS01014307
[OBCS] metagenome; diffuse fluid
121
46
-
Gly
GCC
[ENA]
¢þ
>WENV180234637
OBCS01010435
[OBCS] metagenome; diffuse fluid
122
47
-
Arg
CCG
[ENA]
¢þ
>WENV180234601
OBCS01001811
[OBCS] metagenome; diffuse fluid
123
48
-
Lys
TTT
[ENA]
¢þ
>WENV180234660
OBCS01014289
[OBCS] metagenome; diffuse fluid
125
52
-
Gly
GCC
[ENA]
¢þ
>WENV180234607
OBCS01002919
[OBCS] metagenome; diffuse fluid
127
216
+
Ser
GGA
[ENA]
¢þ
>WENV180234641
OBCS01010960
[OBCS] metagenome; diffuse fluid
131
201
+
Ala
TGC
[ENA]
¢þ
>WENV180234662
OBCS01014392
[OBCS] metagenome; diffuse fluid
134
58
-
Pro
CGG
[ENA]
¢þ
>WENV180234603
OBCS01002464
[OBCS] metagenome; diffuse fluid
136
212
+
Arg
TCT
[ENA]
¢þ
>WENV180234663
OBCS01015031
[OBCS] metagenome; diffuse fluid
144
69
-
Trp
CCA
[ENA]
¢þ
>WENV180234639
OBCS01010806
[OBCS] metagenome; diffuse fluid
145
218
+
Pro
CGG
[ENA]
¢þ
>WENV180234652
OBCS01013170
[OBCS] metagenome; diffuse fluid
148
76
-
His
GTG
[ENA]
¢þ
>WENV180234611
OBCS01003894
[OBCS] metagenome; diffuse fluid
149
63
-
Ser
TGA
[ENA]
¢þ
>WENV180234656
OBCS01013534
[OBCS] metagenome; diffuse fluid
155
229
+
Met
CAT
[ENA]
¢þ
>WENV180234615
OBCS01004960
[OBCS] metagenome; diffuse fluid
155
252
+
SeC
TCA
[ENA]
¢þ
>WENV180234666
OBCS01015331
[OBCS] metagenome; diffuse fluid
162
86
-
Arg
ACG
[ENA]
¢þ
>WENV180234618
OBCS01006425
[OBCS] metagenome; diffuse fluid
163
87
-
Arg
ACG
[ENA]
¢þ
>WENV180234654
OBCS01013275
[OBCS] metagenome; diffuse fluid
163
89
-
Val
TAC
[ENA]
¢þ
>WENV180234645
OBCS01011580
[OBCS] metagenome; diffuse fluid
167
91
-
fMet
CAT
[ENA]
¢þ
>WENV180234624
OBCS01008955
[OBCS] metagenome; diffuse fluid
168
94
-
Ala
CGC
[ENA]
¢þ
>WENV180234617
OBCS01006018
[OBCS] metagenome; diffuse fluid
169
241
+
Arg
TCT
[ENA]
¢þ
>WENV180234625
OBCS01009204
[OBCS] metagenome; diffuse fluid
172
98
-
Trp
CCA
[ENA]
¢þ
>WENV180234635
OBCS01010244
[OBCS] metagenome; diffuse fluid
175
92
-
Leu
TAG
[ENA]
¢þ
>WENV180234613
OBCS01004757
[OBCS] metagenome; diffuse fluid
179
109
-
Ala
TGC
[ENA]
¢þ
>WENV180234616
OBCS01005873
[OBCS] metagenome; diffuse fluid
183
93
-
Ser
GGA
[ENA]
¢þ
>WENV180234664
OBCS01015070
[OBCS] metagenome; diffuse fluid
185
111
-
Arg
CCG
[ENA]
¢þ
>WENV180234594
OBCS01000601
[OBCS] metagenome; diffuse fluid
187
262
+
Trp
CCA
[ENA]
¢þ
>WENV180234596
OBCS01001294
[OBCS] metagenome; diffuse fluid
187
263
+
Asp
GTC
[ENA]
¢þ
>WENV180234600
OBCS01001723
[OBCS] metagenome; diffuse fluid
208
133
-
Asn
GTT
[ENA]
¢þ
>WENV180234626
OBCS01009547
[OBCS] metagenome; diffuse fluid
211
135
-
Lys
CTT
[ENA]
¢þ
>WENV180234630
OBCS01010089
[OBCS] metagenome; diffuse fluid
211
136
-
Ala
GGC
[ENA]
¢þ
>WENV180234599
OBCS01001521
[OBCS] metagenome; diffuse fluid
212
296
+
Leu
TAG
[ENA]
¢þ
>WENV180234658
OBCS01013854
[OBCS] metagenome; diffuse fluid
216
142
-
Arg
TCG
[ENA]
¢þ
>WENV180234604
OBCS01002464
[OBCS] metagenome; diffuse fluid
225
300
+
His
GTG
[ENA]
¢þ
>WENV180234649
OBCS01012331
[OBCS] metagenome; diffuse fluid
235
161
-
His
GTG
[ENA]
¢þ
>WENV180234623
OBCS01008827
[OBCS] metagenome; diffuse fluid
236
161
-
Trp
CCA
[ENA]
¢þ
>WENV180234606
OBCS01002912
[OBCS] metagenome; diffuse fluid
248
173
-
Glu
TTC
[ENA]
¢þ
>WENV180234608
OBCS01003261
[OBCS] metagenome; diffuse fluid
253
177
-
Pro
CGG
[ENA]
¢þ
>WENV180234614
OBCS01004939
[OBCS] metagenome; diffuse fluid
266
194
-
Thr
TGT
[ENA]
¢þ
>WENV180234610
OBCS01003354
[OBCS] metagenome; diffuse fluid
284
209
-
Phe
GAA
[ENA]
¢þ
>WENV180234605
OBCS01002901
[OBCS] metagenome; diffuse fluid
284
210
-
Gln
TTG
[ENA]
¢þ
>WENV180234598
OBCS01001386
[OBCS] metagenome; diffuse fluid
333
261
-
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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