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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OBEO] jellyfish metagenome; jellyfish
HIT:
35 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV171003997
OBEO01000029
[OBEO] jellyfish metagenome; jellyfish
844
770
-
Arg
TCG
[ENA]
¢þ
>WENV171003996
OBEO01000027
[OBEO] jellyfish metagenome; jellyfish
3088
3002
-
Leu
GAG
[ENA]
¢þ
>WENV171003994
OBEO01000017
[OBEO] jellyfish metagenome; jellyfish
6481
6410
-
Gly
GCC
[ENA]
¢þ
>WENV171003995
OBEO01000018
[OBEO] jellyfish metagenome; jellyfish
16958
16887
-
Gln
TTG
[ENA]
¢þ
>WENV171003982
OBEO01000006
[OBEO] jellyfish metagenome; jellyfish
20840
20767
-
Met
CAT
[ENA]
¢þ
>WENV171003981
OBEO01000006
[OBEO] jellyfish metagenome; jellyfish
20929
20855
-
Met
CAT
[ENA]
¢þ
>WENV171003993
OBEO01000017
[OBEO] jellyfish metagenome; jellyfish
22385
22460
+
Arg
TCT
[ENA]
¢þ
>WENV171003990
OBEO01000016
[OBEO] jellyfish metagenome; jellyfish
22488
22558
+
Gly
TCC
[ENA]
¢þ
>WENV171003991
OBEO01000016
[OBEO] jellyfish metagenome; jellyfish
25636
25710
+
Glu
TTC
[ENA]
¢þ
>WENV171003992
OBEO01000016
[OBEO] jellyfish metagenome; jellyfish
25713
25787
+
Lys
TTT
[ENA]
¢þ
>WENV171003972
OBEO01000003
[OBEO] jellyfish metagenome; jellyfish
31844
31760
-
Ser
TGA
[ENA]
¢þ
>WENV171003979
OBEO01000006
[OBEO] jellyfish metagenome; jellyfish
37779
37855
+
Pro
TGG
[ENA]
¢þ
>WENV171003971
OBEO01000003
[OBEO] jellyfish metagenome; jellyfish
39328
39253
-
Val
GAC
[ENA]
¢þ
>WENV171003967
OBEO01000002
[OBEO] jellyfish metagenome; jellyfish
41971
41887
-
Leu
TAA
[ENA]
¢þ
>WENV171003980
OBEO01000006
[OBEO] jellyfish metagenome; jellyfish
43009
42926
-
Leu
TAG
[ENA]
¢þ
>WENV171003987
OBEO01000007
[OBEO] jellyfish metagenome; jellyfish
43492
43411
-
Tyr
GTA
[ENA]
¢þ
>WENV171003986
OBEO01000007
[OBEO] jellyfish metagenome; jellyfish
43642
43568
-
Thr
TGT
[ENA]
¢þ
>WENV171003988
OBEO01000012
[OBEO] jellyfish metagenome; jellyfish
46775
46705
-
Cys
GCA
[ENA]
¢þ
>WENV171003983
OBEO01000007
[OBEO] jellyfish metagenome; jellyfish
50837
50911
+
Val
TAC
[ENA]
¢þ
>WENV171003984
OBEO01000007
[OBEO] jellyfish metagenome; jellyfish
50920
50995
+
Asp
GTC
[ENA]
¢þ
>WENV171003989
OBEO01000014
[OBEO] jellyfish metagenome; jellyfish
51084
51169
+
Leu
CAA
[ENA]
¢þ
>WENV171003976
OBEO01000005
[OBEO] jellyfish metagenome; jellyfish
51796
51883
+
Ser
GCT
[ENA]
¢þ
>WENV171003963
OBEO01000001
[OBEO] jellyfish metagenome; jellyfish
64870
64943
+
Phe
GAA
[ENA]
¢þ
>WENV171003975
OBEO01000004
[OBEO] jellyfish metagenome; jellyfish
76389
76316
-
Asn
GTT
[ENA]
¢þ
>WENV171003964
OBEO01000001
[OBEO] jellyfish metagenome; jellyfish
85815
85904
+
Ser
GGA
[ENA]
¢þ
>WENV171003985
OBEO01000007
[OBEO] jellyfish metagenome; jellyfish
91560
91633
+
His
GTG
[ENA]
¢þ
>WENV171003977
OBEO01000005
[OBEO] jellyfish metagenome; jellyfish
109530
109604
+
Ala
GGC
[ENA]
¢þ
>WENV171003978
OBEO01000005
[OBEO] jellyfish metagenome; jellyfish
117933
117857
-
Pro
GGG
[ENA]
¢þ
>WENV171003970
OBEO01000003
[OBEO] jellyfish metagenome; jellyfish
131006
130932
-
Trp
CCA
[ENA]
¢þ
>WENV171003969
OBEO01000003
[OBEO] jellyfish metagenome; jellyfish
132395
132322
-
Thr
GGT
[ENA]
¢þ
>WENV171003974
OBEO01000004
[OBEO] jellyfish metagenome; jellyfish
146228
146154
-
Ile
GAT
[ENA]
¢þ
>WENV171003973
OBEO01000004
[OBEO] jellyfish metagenome; jellyfish
146308
146233
-
Ala
TGC
[ENA]
¢þ
>WENV171003968
OBEO01000003
[OBEO] jellyfish metagenome; jellyfish
147875
147950
+
Met
CAT
[ENA]
¢þ
>WENV171003966
OBEO01000002
[OBEO] jellyfish metagenome; jellyfish
154316
154242
-
Arg
ACG
[ENA]
¢þ
>WENV171003965
OBEO01000001
[OBEO] jellyfish metagenome; jellyfish
229113
229039
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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