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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OBER] marine metagenome; marine
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273430
OBER01001658
[OBER] marine metagenome; marine
103
179
+
Ile
GAT
[ENA]
¢þ
>WENV180273433
OBER01002021
[OBER] marine metagenome; marine
146
222
+
Ile
GAT
[ENA]
¢þ
>WENV180273434
OBER01002028
[OBER] marine metagenome; marine
148
224
+
Ile
GAT
[ENA]
¢þ
>WENV180273437
OBER01002057
[OBER] marine metagenome; marine
181
98
-
Tyr
GTA
[ENA]
¢þ
>WENV180273435
OBER01002036
[OBER] marine metagenome; marine
183
100
-
Tyr
GTA
[ENA]
¢þ
>WENV180273431
OBER01001658
[OBER] marine metagenome; marine
188
263
+
Ala
TGC
[ENA]
¢þ
>WENV180273436
OBER01002046
[OBER] marine metagenome; marine
196
272
+
Ile
GAT
[ENA]
¢þ
>WENV180273396
OBER01000104
[OBER] marine metagenome; marine
268
193
-
Trp
CCA
[ENA]
¢þ
>WENV180273407
OBER01000357
[OBER] marine metagenome; marine
301
385
+
Ser
GCT
[ENA]
¢þ
>WENV180273422
OBER01001209
[OBER] marine metagenome; marine
333
408
+
Val
TAC
[ENA]
¢þ
>WENV180273417
OBER01000786
[OBER] marine metagenome; marine
347
429
+
Leu
TAG
[ENA]
¢þ
>WENV180273423
OBER01001209
[OBER] marine metagenome; marine
418
495
+
Asp
GTC
[ENA]
¢þ
>WENV180273428
OBER01001636
[OBER] marine metagenome; marine
429
356
-
Gly
TCC
[ENA]
¢þ
>WENV180273398
OBER01000242
[OBER] marine metagenome; marine
442
353
-
Ser
GGA
[ENA]
¢þ
>WENV180273432
OBER01001713
[OBER] marine metagenome; marine
452
377
-
Glu
TTC
[ENA]
¢þ
>WENV180273420
OBER01001115
[OBER] marine metagenome; marine
455
380
-
Trp
CCA
[ENA]
¢þ
>WENV180273416
OBER01000783
[OBER] marine metagenome; marine
455
529
+
Val
GAC
[ENA]
¢þ
>WENV180273401
OBER01000284
[OBER] marine metagenome; marine
489
414
-
Thr
TGT
[ENA]
¢þ
>WENV180273425
OBER01001262
[OBER] marine metagenome; marine
494
578
+
Leu
TAG
[ENA]
¢þ
>WENV180273418
OBER01000899
[OBER] marine metagenome; marine
496
419
-
Arg
TCG
[ENA]
¢þ
>WENV180273397
OBER01000163
[OBER] marine metagenome; marine
568
492
-
Arg
ACG
[ENA]
¢þ
>WENV180273427
OBER01001636
[OBER] marine metagenome; marine
571
487
-
Tyr
GTA
[ENA]
¢þ
>WENV180273421
OBER01001184
[OBER] marine metagenome; marine
609
533
-
Met
CAT
[ENA]
¢þ
>WENV180273426
OBER01001547
[OBER] marine metagenome; marine
614
699
+
Leu
GAG
[ENA]
¢þ
>WENV180273424
OBER01001223
[OBER] marine metagenome; marine
667
743
+
Met
CAT
[ENA]
¢þ
>WENV180273414
OBER01000445
[OBER] marine metagenome; marine
709
785
+
Arg
TCT
[ENA]
¢þ
>WENV180273419
OBER01001084
[OBER] marine metagenome; marine
721
647
-
Gly
GCC
[ENA]
¢þ
>WENV180273402
OBER01000308
[OBER] marine metagenome; marine
728
655
-
fMet
CAT
[ENA]
¢þ
>WENV180273404
OBER01000311
[OBER] marine metagenome; marine
740
666
-
Ala
TGC
[ENA]
¢þ
>WENV180273392
OBER01000024
[OBER] marine metagenome; marine
755
679
-
Asp
GTC
[ENA]
¢þ
>WENV180273406
OBER01000315
[OBER] marine metagenome; marine
779
704
-
Asn
GTT
[ENA]
¢þ
>WENV180273429
OBER01001650
[OBER] marine metagenome; marine
810
735
-
Ala
TGC
[ENA]
¢þ
>WENV180273412
OBER01000436
[OBER] marine metagenome; marine
842
917
+
Pro
TGG
[ENA]
¢þ
>WENV180273391
OBER01000024
[OBER] marine metagenome; marine
844
769
-
Val
TAC
[ENA]
¢þ
>WENV180273410
OBER01000375
[OBER] marine metagenome; marine
851
925
+
Gln
TTG
[ENA]
¢þ
>WENV180273400
OBER01000259
[OBER] marine metagenome; marine
861
785
-
Arg
ACG
[ENA]
¢þ
>WENV180273405
OBER01000315
[OBER] marine metagenome; marine
903
830
-
Cys
GCA
[ENA]
¢þ
>WENV180273403
OBER01000311
[OBER] marine metagenome; marine
915
841
-
Ile
GAT
[ENA]
¢þ
>WENV180273413
OBER01000436
[OBER] marine metagenome; marine
934
1008
+
Pro
GGG
[ENA]
¢þ
>WENV180273415
OBER01000548
[OBER] marine metagenome; marine
945
1019
+
Gln
TTG
[ENA]
¢þ
>WENV180273409
OBER01000368
[OBER] marine metagenome; marine
970
1044
+
Arg
TCT
[ENA]
¢þ
>WENV180273394
OBER01000057
[OBER] marine metagenome; marine
1019
1094
+
Lys
TTT
[ENA]
¢þ
>WENV180273408
OBER01000361
[OBER] marine metagenome; marine
1029
1104
+
Lys
TTT
[ENA]
¢þ
>WENV180273395
OBER01000064
[OBER] marine metagenome; marine
1052
1125
+
Gly
TCC
[ENA]
¢þ
>WENV180273399
OBER01000251
[OBER] marine metagenome; marine
1064
1149
+
Leu
TAA
[ENA]
¢þ
>WENV180273411
OBER01000407
[OBER] marine metagenome; marine
1280
1209
-
Cys
GCA
[ENA]
¢þ
>WENV180273393
OBER01000029
[OBER] marine metagenome; marine
1682
1593
-
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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