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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA gene List
[OBES] marine metagenome; marine
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273485
OBES01001887
[OBES] marine metagenome; marine
75
1
-
Gly
GCC
[ENA]
¢þ
>WENV180273456
OBES01000393
[OBES] marine metagenome; marine
117
43
-
His
GTG
[ENA]
¢þ
>WENV180273484
OBES01001799
[OBES] marine metagenome; marine
143
224
+
Leu
TAA
[ENA]
¢þ
>WENV180273477
OBES01001117
[OBES] marine metagenome; marine
148
78
-
Gly
TCC
[ENA]
¢þ
>WENV180273472
OBES01001023
[OBES] marine metagenome; marine
190
281
+
Ser
GCT
[ENA]
¢þ
>WENV180273486
OBES01002048
[OBES] marine metagenome; marine
220
292
+
Thr
CGT
[ENA]
¢þ
>WENV180273487
OBES01002075
[OBES] marine metagenome; marine
232
159
-
Gln
TTG
[ENA]
¢þ
>WENV180273460
OBES01000521
[OBES] marine metagenome; marine
291
215
-
His
GTG
[ENA]
¢þ
>WENV180273461
OBES01000632
[OBES] marine metagenome; marine
374
450
+
fMet
CAT
[ENA]
¢þ
>WENV180273480
OBES01001304
[OBES] marine metagenome; marine
403
495
+
SeC
TCA
[ENA]
¢þ
>WENV180273483
OBES01001403
[OBES] marine metagenome; marine
432
506
+
Val
TAC
[ENA]
¢þ
>WENV180273439
OBES01000003
[OBES] marine metagenome; marine
454
379
-
Ala
TGC
[ENA]
¢þ
>WENV180273481
OBES01001349
[OBES] marine metagenome; marine
457
532
+
Thr
TGT
[ENA]
¢þ
>WENV180273458
OBES01000462
[OBES] marine metagenome; marine
513
598
+
Tyr
GTA
[ENA]
¢þ
>WENV180273445
OBES01000271
[OBES] marine metagenome; marine
521
607
+
Leu
GAG
[ENA]
¢þ
>WENV180273438
OBES01000003
[OBES] marine metagenome; marine
545
469
-
Ile
GAT
[ENA]
¢þ
>WENV180273463
OBES01000728
[OBES] marine metagenome; marine
548
474
-
Ile2
CAT
[ENA]
¢þ
>WENV180273473
OBES01001025
[OBES] marine metagenome; marine
557
481
-
His
GTG
[ENA]
¢þ
>WENV180273479
OBES01001227
[OBES] marine metagenome; marine
570
496
-
Gly
GCC
[ENA]
¢þ
>WENV180273444
OBES01000256
[OBES] marine metagenome; marine
587
673
+
Ser
GGA
[ENA]
¢þ
>WENV180273471
OBES01000996
[OBES] marine metagenome; marine
595
669
+
Gly
GCC
[ENA]
¢þ
>WENV180273476
OBES01001110
[OBES] marine metagenome; marine
602
675
+
Gln
TTG
[ENA]
¢þ
>WENV180273459
OBES01000462
[OBES] marine metagenome; marine
641
714
+
Gly
TCC
[ENA]
¢þ
>WENV180273462
OBES01000650
[OBES] marine metagenome; marine
645
560
-
Leu
TAA
[ENA]
¢þ
>WENV180273470
OBES01000991
[OBES] marine metagenome; marine
647
571
-
Arg
TCG
[ENA]
¢þ
>WENV180273446
OBES01000271
[OBES] marine metagenome; marine
655
731
+
fMet
CAT
[ENA]
¢þ
>WENV180273465
OBES01000849
[OBES] marine metagenome; marine
662
735
+
Thr
GGT
[ENA]
¢þ
>WENV180273457
OBES01000425
[OBES] marine metagenome; marine
662
748
+
Leu
CAA
[ENA]
¢þ
>WENV180273443
OBES01000185
[OBES] marine metagenome; marine
664
739
+
Thr
TGT
[ENA]
¢þ
>WENV180273474
OBES01001052
[OBES] marine metagenome; marine
665
592
-
Arg
CCG
[ENA]
¢þ
>WENV180273467
OBES01000914
[OBES] marine metagenome; marine
674
601
-
Gly
TCC
[ENA]
¢þ
>WENV180273452
OBES01000359
[OBES] marine metagenome; marine
680
606
-
Gln
TTG
[ENA]
¢þ
>WENV180273441
OBES01000153
[OBES] marine metagenome; marine
680
755
+
Val
TAC
[ENA]
¢þ
>WENV180273455
OBES01000393
[OBES] marine metagenome; marine
717
642
-
Phe
GAA
[ENA]
¢þ
>WENV180273475
OBES01001102
[OBES] marine metagenome; marine
727
651
-
Arg
TCG
[ENA]
¢þ
>WENV180273482
OBES01001382
[OBES] marine metagenome; marine
738
662
-
Arg
ACG
[ENA]
¢þ
>WENV180273454
OBES01000379
[OBES] marine metagenome; marine
751
825
+
Phe
GAA
[ENA]
¢þ
>WENV180273442
OBES01000153
[OBES] marine metagenome; marine
770
846
+
Asp
GTC
[ENA]
¢þ
>WENV180273468
OBES01000940
[OBES] marine metagenome; marine
772
845
+
Gly
GCC
[ENA]
¢þ
>WENV180273448
OBES01000294
[OBES] marine metagenome; marine
782
706
-
Met
CAT
[ENA]
¢þ
>WENV180273451
OBES01000325
[OBES] marine metagenome; marine
799
723
-
Met
CAT
[ENA]
¢þ
>WENV180273478
OBES01001221
[OBES] marine metagenome; marine
801
875
+
Trp
CCA
[ENA]
¢þ
>WENV180273466
OBES01000914
[OBES] marine metagenome; marine
818
733
-
Tyr
GTA
[ENA]
¢þ
>WENV180273469
OBES01000940
[OBES] marine metagenome; marine
851
924
+
Cys
GCA
[ENA]
¢þ
>WENV180273464
OBES01000751
[OBES] marine metagenome; marine
852
941
+
Ser
GGA
[ENA]
¢þ
>WENV180273447
OBES01000286
[OBES] marine metagenome; marine
864
938
+
Cys
GCA
[ENA]
¢þ
>WENV180273450
OBES01000314
[OBES] marine metagenome; marine
1004
1087
+
Leu
GAG
[ENA]
¢þ
>WENV180273453
OBES01000376
[OBES] marine metagenome; marine
1026
951
-
Arg
TCT
[ENA]
¢þ
>WENV180273449
OBES01000313
[OBES] marine metagenome; marine
1072
979
-
Ser
GCT
[ENA]
¢þ
>WENV180273440
OBES01000024
[OBES] marine metagenome; marine
1636
1563
-
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK