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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBEV] marine metagenome; marine
HIT:
107 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273748
OBEV01003519
[OBEV] marine metagenome; marine
2
78
+
Ile
GAT
[ENA]
¢þ
>WENV180273752
OBEV01003702
[OBEV] marine metagenome; marine
3
79
+
fMet
CAT
[ENA]
¢þ
>WENV180273753
OBEV01003829
[OBEV] marine metagenome; marine
10
85
+
Asn
GTT
[ENA]
¢þ
>WENV180273745
OBEV01003348
[OBEV] marine metagenome; marine
82
170
+
Ser
GGA
[ENA]
¢þ
>WENV180273707
OBEV01001871
[OBEV] marine metagenome; marine
106
34
-
Lys
TTT
[ENA]
¢þ
>WENV180273710
OBEV01001941
[OBEV] marine metagenome; marine
108
181
+
Asn
GTT
[ENA]
¢þ
>WENV180273738
OBEV01003050
[OBEV] marine metagenome; marine
121
195
+
Gly
TCC
[ENA]
¢þ
>WENV180273755
OBEV01004514
[OBEV] marine metagenome; marine
144
220
+
Ile
GAT
[ENA]
¢þ
>WENV180273742
OBEV01003291
[OBEV] marine metagenome; marine
184
108
-
Arg
TCG
[ENA]
¢þ
>WENV180273749
OBEV01003519
[OBEV] marine metagenome; marine
186
261
+
Ala
TGC
[ENA]
¢þ
>WENV180273706
OBEV01001871
[OBEV] marine metagenome; marine
189
116
-
Thr
TGT
[ENA]
¢þ
>WENV180273747
OBEV01003433
[OBEV] marine metagenome; marine
196
272
+
Ile2
CAT
[ENA]
¢þ
>WENV180273743
OBEV01003292
[OBEV] marine metagenome; marine
196
272
+
Ile
GAT
[ENA]
¢þ
>WENV180273746
OBEV01003387
[OBEV] marine metagenome; marine
216
290
+
His
GTG
[ENA]
¢þ
>WENV180273660
OBEV01000199
[OBEV] marine metagenome; marine
232
321
+
Ser
GGA
[ENA]
¢þ
>WENV180273739
OBEV01003052
[OBEV] marine metagenome; marine
252
178
-
Glu
TTC
[ENA]
¢þ
>WENV180273729
OBEV01002636
[OBEV] marine metagenome; marine
279
205
-
Asp
GTC
[ENA]
¢þ
>WENV180273677
OBEV01000815
[OBEV] marine metagenome; marine
299
372
+
Pro
TGG
[ENA]
¢þ
>WENV180273687
OBEV01000995
[OBEV] marine metagenome; marine
319
408
+
Ser
GGA
[ENA]
¢þ
>WENV180273744
OBEV01003292
[OBEV] marine metagenome; marine
323
398
+
Ala
TGC
[ENA]
¢þ
>WENV180273754
OBEV01004294
[OBEV] marine metagenome; marine
340
249
-
Ser
TGA
[ENA]
¢þ
>WENV180273727
OBEV01002633
[OBEV] marine metagenome; marine
340
424
+
Leu
TAG
[ENA]
¢þ
>WENV180273674
OBEV01000789
[OBEV] marine metagenome; marine
343
268
-
His
GTG
[ENA]
¢þ
>WENV180273750
OBEV01003552
[OBEV] marine metagenome; marine
349
422
+
Gly
GCC
[ENA]
¢þ
>WENV180273663
OBEV01000388
[OBEV] marine metagenome; marine
369
296
-
Cys
GCA
[ENA]
¢þ
>WENV180273708
OBEV01001920
[OBEV] marine metagenome; marine
394
318
-
Pro
TGG
[ENA]
¢þ
>WENV180273728
OBEV01002636
[OBEV] marine metagenome; marine
410
335
-
Val
TAC
[ENA]
¢þ
>WENV180273654
OBEV01000056
[OBEV] marine metagenome; marine
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV180273673
OBEV01000789
[OBEV] marine metagenome; marine
422
348
-
Arg
TCT
[ENA]
¢þ
>WENV180273688
OBEV01000995
[OBEV] marine metagenome; marine
422
508
+
Ser
TGA
[ENA]
¢þ
>WENV180273751
OBEV01003552
[OBEV] marine metagenome; marine
428
501
+
Cys
GCA
[ENA]
¢þ
>WENV180273737
OBEV01003002
[OBEV] marine metagenome; marine
448
373
-
Thr
GGT
[ENA]
¢þ
>WENV180273705
OBEV01001871
[OBEV] marine metagenome; marine
456
381
-
Ile
TAT
[ENA]
¢þ
>WENV180273725
OBEV01002540
[OBEV] marine metagenome; marine
462
538
+
Met
CAT
[ENA]
¢þ
>WENV180273672
OBEV01000789
[OBEV] marine metagenome; marine
501
430
-
Gly
TCC
[ENA]
¢þ
>WENV180273730
OBEV01002639
[OBEV] marine metagenome; marine
505
576
+
Gln
TTG
[ENA]
¢þ
>WENV180273686
OBEV01000968
[OBEV] marine metagenome; marine
515
439
-
Asp
GTC
[ENA]
¢þ
>WENV180273689
OBEV01000995
[OBEV] marine metagenome; marine
515
602
+
Ser
GCT
[ENA]
¢þ
>WENV180273718
OBEV01002411
[OBEV] marine metagenome; marine
519
595
+
Pro
TGG
[ENA]
¢þ
>WENV180273711
OBEV01001941
[OBEV] marine metagenome; marine
520
594
+
Ile2
CAT
[ENA]
¢þ
>WENV180273732
OBEV01002726
[OBEV] marine metagenome; marine
526
601
+
Thr
TGT
[ENA]
¢þ
>WENV180273736
OBEV01003002
[OBEV] marine metagenome; marine
539
466
-
Gly
TCC
[ENA]
¢þ
>WENV180273734
OBEV01002778
[OBEV] marine metagenome; marine
555
630
+
Thr
TGT
[ENA]
¢þ
>WENV180273740
OBEV01003116
[OBEV] marine metagenome; marine
560
484
-
Pro
TGG
[ENA]
¢þ
>WENV180273712
OBEV01002045
[OBEV] marine metagenome; marine
574
650
+
fMet
CAT
[ENA]
¢þ
>WENV180273671
OBEV01000789
[OBEV] marine metagenome; marine
583
508
-
Pro
TGG
[ENA]
¢þ
>WENV180273690
OBEV01000995
[OBEV] marine metagenome; marine
606
680
+
Arg
ACG
[ENA]
¢þ
>WENV180273731
OBEV01002682
[OBEV] marine metagenome; marine
618
543
-
Ala
GGC
[ENA]
¢þ
>WENV180273715
OBEV01002253
[OBEV] marine metagenome; marine
626
550
-
Ile
GAT
[ENA]
¢þ
>WENV180273695
OBEV01001312
[OBEV] marine metagenome; marine
629
553
-
Met
CAT
[ENA]
¢þ
>WENV180273685
OBEV01000968
[OBEV] marine metagenome; marine
636
561
-
Val
TAC
[ENA]
¢þ
>WENV180273702
OBEV01001765
[OBEV] marine metagenome; marine
637
561
-
fMet
CAT
[ENA]
¢þ
>WENV180273659
OBEV01000130
[OBEV] marine metagenome; marine
637
709
+
Gln
TTG
[ENA]
¢þ
>WENV180273666
OBEV01000505
[OBEV] marine metagenome; marine
648
574
-
Ala
TGC
[ENA]
¢þ
>WENV180273717
OBEV01002294
[OBEV] marine metagenome; marine
650
721
+
Thr
TGT
[ENA]
¢þ
>WENV180273726
OBEV01002577
[OBEV] marine metagenome; marine
656
582
-
Asn
GTT
[ENA]
¢þ
>WENV180273724
OBEV01002493
[OBEV] marine metagenome; marine
659
735
+
fMet
CAT
[ENA]
¢þ
>WENV180273683
OBEV01000910
[OBEV] marine metagenome; marine
664
588
-
Asp
GTC
[ENA]
¢þ
>WENV180273700
OBEV01001690
[OBEV] marine metagenome; marine
669
744
+
Thr
TGT
[ENA]
¢þ
>WENV180273693
OBEV01001125
[OBEV] marine metagenome; marine
674
590
-
Leu
TAG
[ENA]
¢þ
>WENV180273719
OBEV01002411
[OBEV] marine metagenome; marine
675
750
+
His
GTG
[ENA]
¢þ
>WENV180273669
OBEV01000789
[OBEV] marine metagenome; marine
679
753
+
Lys
CTT
[ENA]
¢þ
>WENV180273735
OBEV01003002
[OBEV] marine metagenome; marine
694
611
-
Tyr
GTA
[ENA]
¢þ
>WENV180273709
OBEV01001928
[OBEV] marine metagenome; marine
705
776
+
Cys
GCA
[ENA]
¢þ
>WENV180273741
OBEV01003259
[OBEV] marine metagenome; marine
708
780
+
Lys
TTT
[ENA]
¢þ
>WENV180273704
OBEV01001768
[OBEV] marine metagenome; marine
718
643
-
Asp
GTC
[ENA]
¢þ
>WENV180273701
OBEV01001765
[OBEV] marine metagenome; marine
734
820
+
Leu
GAG
[ENA]
¢þ
>WENV180273665
OBEV01000505
[OBEV] marine metagenome; marine
738
651
-
Ser
TGA
[ENA]
¢þ
>WENV180273682
OBEV01000910
[OBEV] marine metagenome; marine
752
677
-
Val
TAC
[ENA]
¢þ
>WENV180273670
OBEV01000789
[OBEV] marine metagenome; marine
765
848
+
Leu
TAG
[ENA]
¢þ
>WENV180273714
OBEV01002193
[OBEV] marine metagenome; marine
774
700
-
Arg
TCG
[ENA]
¢þ
>WENV180273733
OBEV01002742
[OBEV] marine metagenome; marine
787
713
-
Gln
TTG
[ENA]
¢þ
>WENV180273722
OBEV01002459
[OBEV] marine metagenome; marine
800
876
+
Pro
TGG
[ENA]
¢þ
>WENV180273697
OBEV01001544
[OBEV] marine metagenome; marine
805
721
-
Leu
CAA
[ENA]
¢þ
>WENV180273713
OBEV01002119
[OBEV] marine metagenome; marine
806
733
-
Gly
TCC
[ENA]
¢þ
>WENV180273680
OBEV01000896
[OBEV] marine metagenome; marine
821
898
+
Asp
GTC
[ENA]
¢þ
>WENV180273696
OBEV01001495
[OBEV] marine metagenome; marine
833
918
+
Leu
TAA
[ENA]
¢þ
>WENV180273667
OBEV01000562
[OBEV] marine metagenome; marine
847
920
+
Asp
GTC
[ENA]
¢þ
>WENV180273703
OBEV01001768
[OBEV] marine metagenome; marine
864
791
-
Glu
TTC
[ENA]
¢þ
>WENV180273723
OBEV01002459
[OBEV] marine metagenome; marine
879
955
+
Arg
TCT
[ENA]
¢þ
>WENV180273679
OBEV01000889
[OBEV] marine metagenome; marine
898
824
-
Gly
GCC
[ENA]
¢þ
>WENV180273681
OBEV01000896
[OBEV] marine metagenome; marine
903
976
+
Phe
GAA
[ENA]
¢þ
>WENV180273678
OBEV01000838
[OBEV] marine metagenome; marine
912
988
+
Ile2
CAT
[ENA]
¢þ
>WENV180273676
OBEV01000809
[OBEV] marine metagenome; marine
984
902
-
Leu
CAA
[ENA]
¢þ
>WENV180273721
OBEV01002433
[OBEV] marine metagenome; marine
1021
948
-
Ala
TGC
[ENA]
¢þ
>WENV180273698
OBEV01001653
[OBEV] marine metagenome; marine
1021
1094
+
Trp
CCA
[ENA]
¢þ
>WENV180273699
OBEV01001672
[OBEV] marine metagenome; marine
1024
950
-
Gln
TTG
[ENA]
¢þ
>WENV180273692
OBEV01001040
[OBEV] marine metagenome; marine
1041
965
-
fMet
CAT
[ENA]
¢þ
>WENV180273716
OBEV01002289
[OBEV] marine metagenome; marine
1057
1132
+
Thr
TGT
[ENA]
¢þ
>WENV180273668
OBEV01000722
[OBEV] marine metagenome; marine
1090
1166
+
fMet
CAT
[ENA]
¢þ
>WENV180273664
OBEV01000445
[OBEV] marine metagenome; marine
1105
1030
-
Trp
CCA
[ENA]
¢þ
>WENV180273720
OBEV01002433
[OBEV] marine metagenome; marine
1110
1185
+
Ile
GAT
[ENA]
¢þ
>WENV180273694
OBEV01001171
[OBEV] marine metagenome; marine
1138
1212
+
Arg
ACG
[ENA]
¢þ
>WENV180273656
OBEV01000103
[OBEV] marine metagenome; marine
1262
1335
+
Cys
GCA
[ENA]
¢þ
>WENV180273661
OBEV01000315
[OBEV] marine metagenome; marine
1289
1215
-
Gly
GCC
[ENA]
¢þ
>WENV180273691
OBEV01001027
[OBEV] marine metagenome; marine
1345
1419
+
His
GTG
[ENA]
¢þ
>WENV180273657
OBEV01000103
[OBEV] marine metagenome; marine
1386
1461
+
Asn
GTT
[ENA]
¢þ
>WENV180273675
OBEV01000801
[OBEV] marine metagenome; marine
1419
1346
-
Gly
GCC
[ENA]
¢þ
>WENV180273684
OBEV01000940
[OBEV] marine metagenome; marine
1480
1553
+
Ile
TAT
[ENA]
¢þ
>WENV180273662
OBEV01000376
[OBEV] marine metagenome; marine
1817
1732
-
Leu
GAG
[ENA]
¢þ
>WENV180273655
OBEV01000067
[OBEV] marine metagenome; marine
1823
1747
-
Arg
TCT
[ENA]
¢þ
>WENV180273658
OBEV01000119
[OBEV] marine metagenome; marine
2163
2236
+
Arg
CCT
[ENA]
¢þ
>WENV180273650
OBEV01000007
[OBEV] marine metagenome; marine
2388
2470
+
Tyr
GTA
[ENA]
¢þ
>WENV180273651
OBEV01000007
[OBEV] marine metagenome; marine
2475
2548
+
Thr
GGT
[ENA]
¢þ
>WENV180273652
OBEV01000007
[OBEV] marine metagenome; marine
2570
2644
+
Met
CAT
[ENA]
¢þ
>WENV180273653
OBEV01000007
[OBEV] marine metagenome; marine
3826
3900
+
Trp
CCA
[ENA]
¢þ
>WENV180273649
OBEV01000004
[OBEV] marine metagenome; marine
3868
3793
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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