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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OBGC] soil metagenome; soil
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273825
OBGC01000249
[OBGC] soil metagenome; soil
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV180273826
OBGC01000253
[OBGC] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180273807
OBGC01000044
[OBGC] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180273786
OBGC01000018
[OBGC] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180273823
OBGC01000154
[OBGC] soil metagenome; soil
127
202
+
Glu
TTC
[ENA]
¢þ
>WENV180273824
OBGC01000244
[OBGC] soil metagenome; soil
135
60
-
Val
TAC
[ENA]
¢þ
>WENV180273822
OBGC01000144
[OBGC] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180273787
OBGC01000018
[OBGC] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180273819
OBGC01000120
[OBGC] soil metagenome; soil
213
288
+
Glu
TTC
[ENA]
¢þ
>WENV180273820
OBGC01000124
[OBGC] soil metagenome; soil
263
188
-
Lys
TTT
[ENA]
¢þ
>WENV180273821
OBGC01000144
[OBGC] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180273818
OBGC01000070
[OBGC] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180273810
OBGC01000050
[OBGC] soil metagenome; soil
443
359
-
Tyr
GTA
[ENA]
¢þ
>WENV180273817
OBGC01000070
[OBGC] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180273816
OBGC01000070
[OBGC] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180273809
OBGC01000050
[OBGC] soil metagenome; soil
737
653
-
Tyr
GTA
[ENA]
¢þ
>WENV180273815
OBGC01000070
[OBGC] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180273806
OBGC01000036
[OBGC] soil metagenome; soil
1158
1082
-
Arg
TCT
[ENA]
¢þ
>WENV180273792
OBGC01000023
[OBGC] soil metagenome; soil
1829
1745
-
Leu
CAA
[ENA]
¢þ
>WENV180273814
OBGC01000069
[OBGC] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180273813
OBGC01000069
[OBGC] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180273811
OBGC01000062
[OBGC] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180273777
OBGC01000009
[OBGC] soil metagenome; soil
3971
3896
-
Asn
GTT
[ENA]
¢þ
>WENV180273812
OBGC01000069
[OBGC] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180273776
OBGC01000009
[OBGC] soil metagenome; soil
6380
6305
-
Asn
GTT
[ENA]
¢þ
>WENV180273802
OBGC01000030
[OBGC] soil metagenome; soil
7510
7436
-
Sup
CTA
[ENA]
¢þ
>WENV180273801
OBGC01000030
[OBGC] soil metagenome; soil
7622
7548
-
Gln
CTG
[ENA]
¢þ
>WENV180273800
OBGC01000030
[OBGC] soil metagenome; soil
7746
7670
-
Met
CAT
[ENA]
¢þ
>WENV180273799
OBGC01000030
[OBGC] soil metagenome; soil
7836
7762
-
Gln
TTG
[ENA]
¢þ
>WENV180273798
OBGC01000030
[OBGC] soil metagenome; soil
7945
7871
-
Gln
TTG
[ENA]
¢þ
>WENV180273797
OBGC01000030
[OBGC] soil metagenome; soil
8053
7969
-
Leu
TAG
[ENA]
¢þ
>WENV180273808
OBGC01000044
[OBGC] soil metagenome; soil
8115
8191
+
Asp
GTC
[ENA]
¢þ
>WENV180273770
OBGC01000009
[OBGC] soil metagenome; soil
8129
8204
+
Asn
GTT
[ENA]
¢þ
>WENV180273796
OBGC01000030
[OBGC] soil metagenome; soil
8139
8063
-
Met
CAT
[ENA]
¢þ
>WENV180273779
OBGC01000010
[OBGC] soil metagenome; soil
10780
10693
-
Ser
GGA
[ENA]
¢þ
>WENV180273794
OBGC01000028
[OBGC] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180273763
OBGC01000002
[OBGC] soil metagenome; soil
16139
16064
-
Ile2
CAT
[ENA]
¢þ
>WENV180273781
OBGC01000012
[OBGC] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180273775
OBGC01000009
[OBGC] soil metagenome; soil
21682
21607
-
Asn
GTT
[ENA]
¢þ
>WENV180273771
OBGC01000009
[OBGC] soil metagenome; soil
22674
22763
+
Ser
CGA
[ENA]
¢þ
>WENV180273766
OBGC01000007
[OBGC] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180273765
OBGC01000006
[OBGC] soil metagenome; soil
29789
29864
+
Phe
GAA
[ENA]
¢þ
>WENV180273788
OBGC01000018
[OBGC] soil metagenome; soil
35615
35691
+
Arg
CCG
[ENA]
¢þ
>WENV180273789
OBGC01000018
[OBGC] soil metagenome; soil
35750
35825
+
His
GTG
[ENA]
¢þ
>WENV180273790
OBGC01000018
[OBGC] soil metagenome; soil
35846
35932
+
Leu
CAG
[ENA]
¢þ
>WENV180273791
OBGC01000018
[OBGC] soil metagenome; soil
35975
36051
+
Pro
TGG
[ENA]
¢þ
>WENV180273803
OBGC01000031
[OBGC] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180273804
OBGC01000031
[OBGC] soil metagenome; soil
42124
42199
+
Val
TAC
[ENA]
¢þ
>WENV180273805
OBGC01000031
[OBGC] soil metagenome; soil
42204
42279
+
Lys
TTT
[ENA]
¢þ
>WENV180273762
OBGC01000002
[OBGC] soil metagenome; soil
48161
48085
-
Arg
ACG
[ENA]
¢þ
>WENV180273795
OBGC01000029
[OBGC] soil metagenome; soil
48385
48461
+
Pro
GGG
[ENA]
¢þ
>WENV180273761
OBGC01000002
[OBGC] soil metagenome; soil
48437
48361
-
Arg
ACG
[ENA]
¢þ
>WENV180273760
OBGC01000002
[OBGC] soil metagenome; soil
48533
48441
-
Ser
GCT
[ENA]
¢þ
>WENV180273782
OBGC01000014
[OBGC] soil metagenome; soil
50693
50779
+
Leu
CAG
[ENA]
¢þ
>WENV180273783
OBGC01000014
[OBGC] soil metagenome; soil
50808
50894
+
Leu
CAG
[ENA]
¢þ
>WENV180273784
OBGC01000014
[OBGC] soil metagenome; soil
50929
51015
+
Leu
CAG
[ENA]
¢þ
>WENV180273793
OBGC01000025
[OBGC] soil metagenome; soil
56956
56881
-
Thr
GGT
[ENA]
¢þ
>WENV180273772
OBGC01000009
[OBGC] soil metagenome; soil
74114
74189
+
Gly
GCC
[ENA]
¢þ
>WENV180273773
OBGC01000009
[OBGC] soil metagenome; soil
74244
74317
+
Cys
GCA
[ENA]
¢þ
>WENV180273774
OBGC01000009
[OBGC] soil metagenome; soil
74330
74416
+
Leu
TAA
[ENA]
¢þ
>WENV180273756
OBGC01000001
[OBGC] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180273757
OBGC01000001
[OBGC] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180273785
OBGC01000017
[OBGC] soil metagenome; soil
102275
102362
+
Ser
GGA
[ENA]
¢þ
>WENV180273769
OBGC01000008
[OBGC] soil metagenome; soil
105280
105186
-
SeC
TCA
[ENA]
¢þ
>WENV180273778
OBGC01000010
[OBGC] soil metagenome; soil
116521
116434
-
Ser
TGA
[ENA]
¢þ
>WENV180273768
OBGC01000007
[OBGC] soil metagenome; soil
131030
130954
-
fMet
CAT
[ENA]
¢þ
>WENV180273780
OBGC01000012
[OBGC] soil metagenome; soil
131160
131233
+
Gly
CCC
[ENA]
¢þ
>WENV180273767
OBGC01000007
[OBGC] soil metagenome; soil
134899
134813
-
Leu
GAG
[ENA]
¢þ
>WENV180273764
OBGC01000003
[OBGC] soil metagenome; soil
175912
175986
+
Arg
CCT
[ENA]
¢þ
>WENV180273758
OBGC01000002
[OBGC] soil metagenome; soil
177214
177290
+
fMet
CAT
[ENA]
¢þ
>WENV180273759
OBGC01000002
[OBGC] soil metagenome; soil
177324
177400
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK