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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBGD] soil metagenome; soil
HIT:
60 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273882
OBGD01000250
[OBGD] soil metagenome; soil
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV180273886
OBGD01000288
[OBGD] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180273884
OBGD01000273
[OBGD] soil metagenome; soil
79
3
-
Asp
GTC
[ENA]
¢þ
>WENV180273879
OBGD01000146
[OBGD] soil metagenome; soil
81
6
-
Asn
GTT
[ENA]
¢þ
>WENV180273883
OBGD01000272
[OBGD] soil metagenome; soil
86
10
-
Arg
ACG
[ENA]
¢þ
>WENV180273885
OBGD01000286
[OBGD] soil metagenome; soil
87
1
-
Leu
CAG
[ENA]
¢þ
>WENV180273829
OBGD01000003
[OBGD] soil metagenome; soil
99
174
+
Val
TAC
[ENA]
¢þ
>WENV180273830
OBGD01000003
[OBGD] soil metagenome; soil
179
254
+
Lys
TTT
[ENA]
¢þ
>WENV180273881
OBGD01000194
[OBGD] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180273861
OBGD01000064
[OBGD] soil metagenome; soil
276
201
-
Lys
TTT
[ENA]
¢þ
>WENV180273880
OBGD01000194
[OBGD] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180273860
OBGD01000064
[OBGD] soil metagenome; soil
356
281
-
Val
TAC
[ENA]
¢þ
>WENV180273878
OBGD01000127
[OBGD] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180273877
OBGD01000127
[OBGD] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180273859
OBGD01000064
[OBGD] soil metagenome; soil
581
506
-
Lys
TTT
[ENA]
¢þ
>WENV180273858
OBGD01000064
[OBGD] soil metagenome; soil
661
586
-
Val
TAC
[ENA]
¢þ
>WENV180273876
OBGD01000127
[OBGD] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180273875
OBGD01000127
[OBGD] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180273857
OBGD01000064
[OBGD] soil metagenome; soil
872
797
-
Lys
TTT
[ENA]
¢þ
>WENV180273852
OBGD01000040
[OBGD] soil metagenome; soil
1161
1085
-
Arg
TCT
[ENA]
¢þ
>WENV180273874
OBGD01000124
[OBGD] soil metagenome; soil
1310
1235
-
Thr
CGT
[ENA]
¢þ
>WENV180273853
OBGD01000044
[OBGD] soil metagenome; soil
1831
1747
-
Leu
CAA
[ENA]
¢þ
>WENV180273869
OBGD01000115
[OBGD] soil metagenome; soil
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV180273872
OBGD01000120
[OBGD] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180273871
OBGD01000120
[OBGD] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180273848
OBGD01000027
[OBGD] soil metagenome; soil
2763
2687
-
Pro
GGG
[ENA]
¢þ
>WENV180273873
OBGD01000122
[OBGD] soil metagenome; soil
3392
3317
-
Glu
TTC
[ENA]
¢þ
>WENV180273864
OBGD01000085
[OBGD] soil metagenome; soil
3963
3874
-
Ser
CGA
[ENA]
¢þ
>WENV180273863
OBGD01000085
[OBGD] soil metagenome; soil
4955
5030
+
Asn
GTT
[ENA]
¢þ
>WENV180273870
OBGD01000120
[OBGD] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180273850
OBGD01000030
[OBGD] soil metagenome; soil
6796
6872
+
Val
GAC
[ENA]
¢þ
>WENV180273851
OBGD01000030
[OBGD] soil metagenome; soil
6877
6953
+
Val
GAC
[ENA]
¢þ
>WENV180273868
OBGD01000110
[OBGD] soil metagenome; soil
7530
7456
-
Sup
CTA
[ENA]
¢þ
>WENV180273867
OBGD01000110
[OBGD] soil metagenome; soil
7642
7568
-
Gln
CTG
[ENA]
¢þ
>WENV180273866
OBGD01000110
[OBGD] soil metagenome; soil
7766
7690
-
Met
CAT
[ENA]
¢þ
>WENV180273865
OBGD01000110
[OBGD] soil metagenome; soil
7856
7782
-
Gln
TTG
[ENA]
¢þ
>WENV180273862
OBGD01000076
[OBGD] soil metagenome; soil
11258
11164
-
SeC
TCA
[ENA]
¢þ
>WENV180273847
OBGD01000025
[OBGD] soil metagenome; soil
11985
12061
+
Pro
CGG
[ENA]
¢þ
>WENV180273855
OBGD01000049
[OBGD] soil metagenome; soil
12302
12218
-
Tyr
GTA
[ENA]
¢þ
>WENV180273854
OBGD01000049
[OBGD] soil metagenome; soil
12596
12512
-
Tyr
GTA
[ENA]
¢þ
>WENV180273827
OBGD01000002
[OBGD] soil metagenome; soil
18171
18258
+
Ser
TGA
[ENA]
¢þ
>WENV180273856
OBGD01000054
[OBGD] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180273845
OBGD01000017
[OBGD] soil metagenome; soil
28067
27991
-
Pro
TGG
[ENA]
¢þ
>WENV180273844
OBGD01000017
[OBGD] soil metagenome; soil
28196
28110
-
Leu
CAG
[ENA]
¢þ
>WENV180273843
OBGD01000017
[OBGD] soil metagenome; soil
28292
28217
-
His
GTG
[ENA]
¢þ
>WENV180273842
OBGD01000017
[OBGD] soil metagenome; soil
28427
28351
-
Arg
CCG
[ENA]
¢þ
>WENV180273846
OBGD01000022
[OBGD] soil metagenome; soil
29789
29864
+
Phe
GAA
[ENA]
¢þ
>WENV180273840
OBGD01000012
[OBGD] soil metagenome; soil
32002
32077
+
Ile2
CAT
[ENA]
¢þ
>WENV180273849
OBGD01000028
[OBGD] soil metagenome; soil
48809
48733
-
fMet
CAT
[ENA]
¢þ
>WENV180273838
OBGD01000010
[OBGD] soil metagenome; soil
61832
61746
-
Leu
TAA
[ENA]
¢þ
>WENV180273837
OBGD01000010
[OBGD] soil metagenome; soil
61918
61845
-
Cys
GCA
[ENA]
¢þ
>WENV180273836
OBGD01000010
[OBGD] soil metagenome; soil
62048
61973
-
Gly
GCC
[ENA]
¢þ
>WENV180273841
OBGD01000017
[OBGD] soil metagenome; soil
63845
63770
-
Trp
CCA
[ENA]
¢þ
>WENV180273839
OBGD01000011
[OBGD] soil metagenome; soil
70407
70480
+
Gly
CCC
[ENA]
¢þ
>WENV180273834
OBGD01000009
[OBGD] soil metagenome; soil
77848
77940
+
Ser
GCT
[ENA]
¢þ
>WENV180273835
OBGD01000009
[OBGD] soil metagenome; soil
77944
78020
+
Arg
ACG
[ENA]
¢þ
>WENV180273833
OBGD01000008
[OBGD] soil metagenome; soil
102788
102712
-
fMet
CAT
[ENA]
¢þ
>WENV180273832
OBGD01000008
[OBGD] soil metagenome; soil
106657
106571
-
Leu
GAG
[ENA]
¢þ
>WENV180273831
OBGD01000005
[OBGD] soil metagenome; soil
119120
119194
+
Arg
CCT
[ENA]
¢þ
>WENV180273828
OBGD01000002
[OBGD] soil metagenome; soil
123912
123999
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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