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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBGE] soil metagenome; soil
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273958
OBGE01000297
[OBGE] soil metagenome; soil
78
2
-
Arg
ACG
[ENA]
¢þ
>WENV180273926
OBGE01000021
[OBGE] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180273919
OBGE01000019
[OBGE] soil metagenome; soil
89
162
+
Cys
GCA
[ENA]
¢þ
>WENV180273913
OBGE01000017
[OBGE] soil metagenome; soil
112
188
+
Asp
GTC
[ENA]
¢þ
>WENV180273952
OBGE01000137
[OBGE] soil metagenome; soil
117
193
+
Arg
ACG
[ENA]
¢þ
>WENV180273957
OBGE01000289
[OBGE] soil metagenome; soil
135
60
-
Val
TAC
[ENA]
¢þ
>WENV180273920
OBGE01000019
[OBGE] soil metagenome; soil
175
261
+
Leu
TAA
[ENA]
¢þ
>WENV180273955
OBGE01000164
[OBGE] soil metagenome; soil
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180273914
OBGE01000017
[OBGE] soil metagenome; soil
197
272
+
Trp
CCA
[ENA]
¢þ
>WENV180273905
OBGE01000010
[OBGE] soil metagenome; soil
202
277
+
Lys
TTT
[ENA]
¢þ
>WENV180273956
OBGE01000178
[OBGE] soil metagenome; soil
213
288
+
Glu
TTC
[ENA]
¢þ
>WENV180273953
OBGE01000138
[OBGE] soil metagenome; soil
304
229
-
Glu
TTC
[ENA]
¢þ
>WENV180273954
OBGE01000164
[OBGE] soil metagenome; soil
305
229
-
Ile
GAT
[ENA]
¢þ
>WENV180273951
OBGE01000068
[OBGE] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180273906
OBGE01000010
[OBGE] soil metagenome; soil
410
485
+
Lys
TTT
[ENA]
¢þ
>WENV180273941
OBGE01000050
[OBGE] soil metagenome; soil
443
359
-
Tyr
GTA
[ENA]
¢þ
>WENV180273950
OBGE01000068
[OBGE] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180273949
OBGE01000068
[OBGE] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180273940
OBGE01000050
[OBGE] soil metagenome; soil
737
653
-
Tyr
GTA
[ENA]
¢þ
>WENV180273948
OBGE01000068
[OBGE] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180273939
OBGE01000037
[OBGE] soil metagenome; soil
1178
1102
-
Arg
TCT
[ENA]
¢þ
>WENV180273944
OBGE01000060
[OBGE] soil metagenome; soil
2222
2146
-
Asp
GTC
[ENA]
¢þ
>WENV180273947
OBGE01000067
[OBGE] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180273946
OBGE01000067
[OBGE] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180273942
OBGE01000059
[OBGE] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180273945
OBGE01000067
[OBGE] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180273938
OBGE01000034
[OBGE] soil metagenome; soil
7510
7436
-
Sup
CTA
[ENA]
¢þ
>WENV180273937
OBGE01000034
[OBGE] soil metagenome; soil
7622
7548
-
Gln
CTG
[ENA]
¢þ
>WENV180273936
OBGE01000034
[OBGE] soil metagenome; soil
7746
7670
-
Met
CAT
[ENA]
¢þ
>WENV180273935
OBGE01000034
[OBGE] soil metagenome; soil
7836
7762
-
Gln
TTG
[ENA]
¢þ
>WENV180273934
OBGE01000034
[OBGE] soil metagenome; soil
7945
7871
-
Gln
TTG
[ENA]
¢þ
>WENV180273933
OBGE01000034
[OBGE] soil metagenome; soil
8053
7969
-
Leu
TAG
[ENA]
¢þ
>WENV180273932
OBGE01000034
[OBGE] soil metagenome; soil
8139
8063
-
Met
CAT
[ENA]
¢þ
>WENV180273943
OBGE01000060
[OBGE] soil metagenome; soil
10225
10149
-
Asp
GTC
[ENA]
¢þ
>WENV180273904
OBGE01000009
[OBGE] soil metagenome; soil
10780
10693
-
Ser
GGA
[ENA]
¢þ
>WENV180273929
OBGE01000029
[OBGE] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180273894
OBGE01000002
[OBGE] soil metagenome; soil
16139
16064
-
Ile2
CAT
[ENA]
¢þ
>WENV180273908
OBGE01000011
[OBGE] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180273899
OBGE01000007
[OBGE] soil metagenome; soil
28226
28301
+
Ile2
CAT
[ENA]
¢þ
>WENV180273915
OBGE01000017
[OBGE] soil metagenome; soil
35615
35691
+
Arg
CCG
[ENA]
¢þ
>WENV180273916
OBGE01000017
[OBGE] soil metagenome; soil
35750
35825
+
His
GTG
[ENA]
¢þ
>WENV180273917
OBGE01000017
[OBGE] soil metagenome; soil
35846
35932
+
Leu
CAG
[ENA]
¢þ
>WENV180273918
OBGE01000017
[OBGE] soil metagenome; soil
35975
36051
+
Pro
TGG
[ENA]
¢þ
>WENV180273898
OBGE01000004
[OBGE] soil metagenome; soil
38186
38111
-
Gly
GCC
[ENA]
¢þ
>WENV180273897
OBGE01000004
[OBGE] soil metagenome; soil
38297
38222
-
Gly
GCC
[ENA]
¢þ
>WENV180273931
OBGE01000032
[OBGE] soil metagenome; soil
41913
41988
+
Lys
TTT
[ENA]
¢þ
>WENV180273893
OBGE01000002
[OBGE] soil metagenome; soil
48161
48085
-
Arg
ACG
[ENA]
¢þ
>WENV180273892
OBGE01000002
[OBGE] soil metagenome; soil
48257
48165
-
Ser
GCT
[ENA]
¢þ
>WENV180273930
OBGE01000030
[OBGE] soil metagenome; soil
48388
48464
+
Pro
GGG
[ENA]
¢þ
>WENV180273925
OBGE01000021
[OBGE] soil metagenome; soil
51518
51429
-
Ser
CGA
[ENA]
¢þ
>WENV180273921
OBGE01000021
[OBGE] soil metagenome; soil
52510
52585
+
Asn
GTT
[ENA]
¢þ
>WENV180273928
OBGE01000026
[OBGE] soil metagenome; soil
56956
56881
-
Thr
GGT
[ENA]
¢þ
>WENV180273927
OBGE01000023
[OBGE] soil metagenome; soil
61832
61916
+
Leu
CAA
[ENA]
¢þ
>WENV180273911
OBGE01000014
[OBGE] soil metagenome; soil
64179
64093
-
Leu
CAG
[ENA]
¢þ
>WENV180273910
OBGE01000014
[OBGE] soil metagenome; soil
64300
64214
-
Leu
CAG
[ENA]
¢þ
>WENV180273909
OBGE01000014
[OBGE] soil metagenome; soil
64415
64329
-
Leu
CAG
[ENA]
¢þ
>WENV180273924
OBGE01000021
[OBGE] soil metagenome; soil
66063
65988
-
Asn
GTT
[ENA]
¢þ
>WENV180273922
OBGE01000021
[OBGE] soil metagenome; soil
67812
67887
+
Asn
GTT
[ENA]
¢þ
>WENV180273896
OBGE01000004
[OBGE] soil metagenome; soil
68031
68106
+
Phe
GAA
[ENA]
¢þ
>WENV180273923
OBGE01000021
[OBGE] soil metagenome; soil
70221
70296
+
Asn
GTT
[ENA]
¢þ
>WENV180273887
OBGE01000001
[OBGE] soil metagenome; soil
94942
95018
+
Val
GAC
[ENA]
¢þ
>WENV180273888
OBGE01000001
[OBGE] soil metagenome; soil
95023
95099
+
Val
GAC
[ENA]
¢þ
>WENV180273912
OBGE01000016
[OBGE] soil metagenome; soil
102275
102362
+
Ser
GGA
[ENA]
¢þ
>WENV180273902
OBGE01000008
[OBGE] soil metagenome; soil
105311
105217
-
SeC
TCA
[ENA]
¢þ
>WENV180273903
OBGE01000009
[OBGE] soil metagenome; soil
116521
116434
-
Ser
TGA
[ENA]
¢þ
>WENV180273901
OBGE01000007
[OBGE] soil metagenome; soil
130917
130841
-
fMet
CAT
[ENA]
¢þ
>WENV180273907
OBGE01000011
[OBGE] soil metagenome; soil
131160
131233
+
Gly
CCC
[ENA]
¢þ
>WENV180273900
OBGE01000007
[OBGE] soil metagenome; soil
134786
134700
-
Leu
GAG
[ENA]
¢þ
>WENV180273895
OBGE01000003
[OBGE] soil metagenome; soil
175912
175986
+
Arg
CCT
[ENA]
¢þ
>WENV180273889
OBGE01000002
[OBGE] soil metagenome; soil
176938
177014
+
fMet
CAT
[ENA]
¢þ
>WENV180273890
OBGE01000002
[OBGE] soil metagenome; soil
177048
177124
+
fMet
CAT
[ENA]
¢þ
>WENV180273891
OBGE01000002
[OBGE] soil metagenome; soil
177158
177234
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK