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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OBGF] soil metagenome; soil
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180273966
OBGF01000010
[OBGF] soil metagenome; soil
33
108
+
Trp
CCA
[ENA]
¢þ
>WENV180274013
OBGF01000313
[OBGF] soil metagenome; soil
78
3
-
Lys
TTT
[ENA]
¢þ
>WENV180274007
OBGF01000162
[OBGF] soil metagenome; soil
83
7
-
Arg
ACG
[ENA]
¢þ
>WENV180273990
OBGF01000092
[OBGF] soil metagenome; soil
108
22
-
Leu
CAG
[ENA]
¢þ
>WENV180274012
OBGF01000290
[OBGF] soil metagenome; soil
137
213
+
Asp
GTC
[ENA]
¢þ
>WENV180273986
OBGF01000049
[OBGF] soil metagenome; soil
146
62
-
Leu
TAG
[ENA]
¢þ
>WENV180274006
OBGF01000162
[OBGF] soil metagenome; soil
179
87
-
Ser
GCT
[ENA]
¢þ
>WENV180274010
OBGF01000197
[OBGF] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180274011
OBGF01000225
[OBGF] soil metagenome; soil
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180273989
OBGF01000092
[OBGF] soil metagenome; soil
223
137
-
Leu
CAG
[ENA]
¢þ
>WENV180273985
OBGF01000049
[OBGF] soil metagenome; soil
232
156
-
Met
CAT
[ENA]
¢þ
>WENV180274009
OBGF01000197
[OBGF] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180274005
OBGF01000127
[OBGF] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180274008
OBGF01000183
[OBGF] soil metagenome; soil
410
336
-
Glu
CTC
[ENA]
¢þ
>WENV180274004
OBGF01000127
[OBGF] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180274003
OBGF01000127
[OBGF] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180274002
OBGF01000127
[OBGF] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180273984
OBGF01000040
[OBGF] soil metagenome; soil
1178
1102
-
Arg
TCT
[ENA]
¢þ
>WENV180273993
OBGF01000111
[OBGF] soil metagenome; soil
1788
1863
+
Asn
GTT
[ENA]
¢þ
>WENV180274001
OBGF01000121
[OBGF] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180274000
OBGF01000121
[OBGF] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180273983
OBGF01000029
[OBGF] soil metagenome; soil
2780
2704
-
Pro
GGG
[ENA]
¢þ
>WENV180273965
OBGF01000009
[OBGF] soil metagenome; soil
2869
2793
-
Val
GAC
[ENA]
¢þ
>WENV180273964
OBGF01000009
[OBGF] soil metagenome; soil
2950
2874
-
Val
GAC
[ENA]
¢þ
>WENV180273987
OBGF01000079
[OBGF] soil metagenome; soil
3073
3157
+
Tyr
GTA
[ENA]
¢þ
>WENV180273992
OBGF01000109
[OBGF] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180273988
OBGF01000079
[OBGF] soil metagenome; soil
3367
3451
+
Tyr
GTA
[ENA]
¢þ
>WENV180273994
OBGF01000111
[OBGF] soil metagenome; soil
4197
4272
+
Asn
GTT
[ENA]
¢þ
>WENV180273999
OBGF01000121
[OBGF] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180273963
OBGF01000007
[OBGF] soil metagenome; soil
5815
5741
-
Arg
CCT
[ENA]
¢þ
>WENV180273998
OBGF01000114
[OBGF] soil metagenome; soil
7514
7440
-
Sup
CTA
[ENA]
¢þ
>WENV180273997
OBGF01000114
[OBGF] soil metagenome; soil
7626
7552
-
Gln
CTG
[ENA]
¢þ
>WENV180273996
OBGF01000114
[OBGF] soil metagenome; soil
7750
7674
-
Met
CAT
[ENA]
¢þ
>WENV180273995
OBGF01000114
[OBGF] soil metagenome; soil
7840
7766
-
Gln
TTG
[ENA]
¢þ
>WENV180273991
OBGF01000100
[OBGF] soil metagenome; soil
10759
10672
-
Ser
GGA
[ENA]
¢þ
>WENV180273978
OBGF01000020
[OBGF] soil metagenome; soil
13529
13454
-
Asn
GTT
[ENA]
¢þ
>WENV180273980
OBGF01000027
[OBGF] soil metagenome; soil
14064
14150
+
Leu
GAG
[ENA]
¢þ
>WENV180273977
OBGF01000020
[OBGF] soil metagenome; soil
14521
14610
+
Ser
CGA
[ENA]
¢þ
>WENV180273981
OBGF01000027
[OBGF] soil metagenome; soil
17933
18009
+
fMet
CAT
[ENA]
¢þ
>WENV180273971
OBGF01000011
[OBGF] soil metagenome; soil
18830
18905
+
Ile2
CAT
[ENA]
¢þ
>WENV180273961
OBGF01000003
[OBGF] soil metagenome; soil
19807
19732
-
Phe
GAA
[ENA]
¢þ
>WENV180273967
OBGF01000010
[OBGF] soil metagenome; soil
35451
35527
+
Arg
CCG
[ENA]
¢þ
>WENV180273968
OBGF01000010
[OBGF] soil metagenome; soil
35586
35661
+
His
GTG
[ENA]
¢þ
>WENV180273969
OBGF01000010
[OBGF] soil metagenome; soil
35682
35768
+
Leu
CAG
[ENA]
¢þ
>WENV180273970
OBGF01000010
[OBGF] soil metagenome; soil
35811
35887
+
Pro
TGG
[ENA]
¢þ
>WENV180273976
OBGF01000018
[OBGF] soil metagenome; soil
38185
38110
-
Gly
GCC
[ENA]
¢þ
>WENV180273975
OBGF01000018
[OBGF] soil metagenome; soil
38297
38222
-
Gly
GCC
[ENA]
¢þ
>WENV180273982
OBGF01000028
[OBGF] soil metagenome; soil
41143
41067
-
Pro
CGG
[ENA]
¢þ
>WENV180273979
OBGF01000022
[OBGF] soil metagenome; soil
61832
61916
+
Leu
CAA
[ENA]
¢þ
>WENV180273959
OBGF01000002
[OBGF] soil metagenome; soil
72188
72094
-
SeC
TCA
[ENA]
¢þ
>WENV180273974
OBGF01000016
[OBGF] soil metagenome; soil
75797
75711
-
Leu
TAA
[ENA]
¢þ
>WENV180273973
OBGF01000016
[OBGF] soil metagenome; soil
75883
75810
-
Cys
GCA
[ENA]
¢þ
>WENV180273972
OBGF01000016
[OBGF] soil metagenome; soil
76013
75938
-
Gly
GCC
[ENA]
¢þ
>WENV180273962
OBGF01000006
[OBGF] soil metagenome; soil
105789
105702
-
Ser
TGA
[ENA]
¢þ
>WENV180273960
OBGF01000003
[OBGF] soil metagenome; soil
131107
131180
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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