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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OBGG] soil metagenome; soil
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274066
OBGG01000137
[OBGG] soil metagenome; soil
1
76
+
Val
TAC
[ENA]
¢þ
>WENV180274056
OBGG01000078
[OBGG] soil metagenome; soil
8
95
+
Ser
GGA
[ENA]
¢þ
>WENV180274073
OBGG01000342
[OBGG] soil metagenome; soil
77
3
-
Gln
TTG
[ENA]
¢þ
>WENV180274074
OBGG01000355
[OBGG] soil metagenome; soil
78
3
-
Gly
GCC
[ENA]
¢þ
>WENV180274067
OBGG01000137
[OBGG] soil metagenome; soil
81
156
+
Lys
TTT
[ENA]
¢þ
>WENV180274044
OBGG01000046
[OBGG] soil metagenome; soil
137
213
+
Asp
GTC
[ENA]
¢þ
>WENV180274027
OBGG01000017
[OBGG] soil metagenome; soil
137
213
+
Asp
GTC
[ENA]
¢þ
>WENV180274033
OBGG01000020
[OBGG] soil metagenome; soil
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV180274070
OBGG01000157
[OBGG] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180274071
OBGG01000159
[OBGG] soil metagenome; soil
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180274028
OBGG01000017
[OBGG] soil metagenome; soil
222
297
+
Trp
CCA
[ENA]
¢þ
>WENV180274072
OBGG01000248
[OBGG] soil metagenome; soil
268
193
-
Lys
TTT
[ENA]
¢þ
>WENV180274065
OBGG01000094
[OBGG] soil metagenome; soil
298
223
-
Thr
GGT
[ENA]
¢þ
>WENV180274068
OBGG01000137
[OBGG] soil metagenome; soil
303
378
+
Lys
TTT
[ENA]
¢þ
>WENV180274069
OBGG01000157
[OBGG] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180274064
OBGG01000094
[OBGG] soil metagenome; soil
378
304
-
Gly
TCC
[ENA]
¢þ
>WENV180274063
OBGG01000094
[OBGG] soil metagenome; soil
579
495
-
Tyr
GTA
[ENA]
¢þ
>WENV180274062
OBGG01000094
[OBGG] soil metagenome; soil
663
588
-
Thr
TGT
[ENA]
¢þ
>WENV180274040
OBGG01000038
[OBGG] soil metagenome; soil
1178
1102
-
Arg
TCT
[ENA]
¢þ
>WENV180274043
OBGG01000044
[OBGG] soil metagenome; soil
1667
1593
-
Sup
CTA
[ENA]
¢þ
>WENV180274042
OBGG01000044
[OBGG] soil metagenome; soil
1779
1705
-
Gln
CTG
[ENA]
¢þ
>WENV180274041
OBGG01000044
[OBGG] soil metagenome; soil
1903
1827
-
Met
CAT
[ENA]
¢þ
>WENV180274057
OBGG01000089
[OBGG] soil metagenome; soil
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV180274061
OBGG01000092
[OBGG] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180274060
OBGG01000092
[OBGG] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180274055
OBGG01000077
[OBGG] soil metagenome; soil
3292
3367
+
Thr
CGT
[ENA]
¢þ
>WENV180274058
OBGG01000090
[OBGG] soil metagenome; soil
3320
3396
+
Pro
GGG
[ENA]
¢þ
>WENV180274016
OBGG01000002
[OBGG] soil metagenome; soil
4766
4692
-
Arg
CCT
[ENA]
¢þ
>WENV180274059
OBGG01000092
[OBGG] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180274045
OBGG01000046
[OBGG] soil metagenome; soil
8140
8216
+
Asp
GTC
[ENA]
¢þ
>WENV180274050
OBGG01000058
[OBGG] soil metagenome; soil
9708
9619
-
Ser
CGA
[ENA]
¢þ
>WENV180274048
OBGG01000058
[OBGG] soil metagenome; soil
10700
10775
+
Asn
GTT
[ENA]
¢þ
>WENV180274039
OBGG01000037
[OBGG] soil metagenome; soil
10849
10774
-
Phe
GAA
[ENA]
¢þ
>WENV180274038
OBGG01000028
[OBGG] soil metagenome; soil
11995
12071
+
Pro
CGG
[ENA]
¢þ
>WENV180274021
OBGG01000006
[OBGG] soil metagenome; soil
19851
19776
-
Phe
GAA
[ENA]
¢þ
>WENV180274054
OBGG01000063
[OBGG] soil metagenome; soil
21767
21851
+
Tyr
GTA
[ENA]
¢þ
>WENV180274051
OBGG01000061
[OBGG] soil metagenome; soil
22991
23066
+
Lys
TTT
[ENA]
¢þ
>WENV180274052
OBGG01000061
[OBGG] soil metagenome; soil
23202
23277
+
Val
TAC
[ENA]
¢þ
>WENV180274053
OBGG01000061
[OBGG] soil metagenome; soil
23282
23357
+
Lys
TTT
[ENA]
¢þ
>WENV180274049
OBGG01000058
[OBGG] soil metagenome; soil
24253
24178
-
Asn
GTT
[ENA]
¢þ
>WENV180274047
OBGG01000047
[OBGG] soil metagenome; soil
32088
32012
-
Arg
ACG
[ENA]
¢þ
>WENV180274046
OBGG01000047
[OBGG] soil metagenome; soil
32227
32151
-
Arg
ACG
[ENA]
¢þ
>WENV180274029
OBGG01000017
[OBGG] soil metagenome; soil
35640
35716
+
Arg
CCG
[ENA]
¢þ
>WENV180274030
OBGG01000017
[OBGG] soil metagenome; soil
35775
35850
+
His
GTG
[ENA]
¢þ
>WENV180274031
OBGG01000017
[OBGG] soil metagenome; soil
35871
35957
+
Leu
CAG
[ENA]
¢þ
>WENV180274032
OBGG01000017
[OBGG] soil metagenome; soil
36000
36076
+
Pro
TGG
[ENA]
¢þ
>WENV180274019
OBGG01000004
[OBGG] soil metagenome; soil
38588
38682
+
SeC
TCA
[ENA]
¢þ
>WENV180274023
OBGG01000011
[OBGG] soil metagenome; soil
41745
41820
+
Gly
GCC
[ENA]
¢þ
>WENV180274024
OBGG01000011
[OBGG] soil metagenome; soil
41875
41948
+
Cys
GCA
[ENA]
¢þ
>WENV180274025
OBGG01000011
[OBGG] soil metagenome; soil
41961
42047
+
Leu
TAA
[ENA]
¢þ
>WENV180274026
OBGG01000013
[OBGG] soil metagenome; soil
48809
48733
-
fMet
CAT
[ENA]
¢þ
>WENV180274037
OBGG01000023
[OBGG] soil metagenome; soil
61832
61916
+
Leu
CAA
[ENA]
¢þ
>WENV180274036
OBGG01000021
[OBGG] soil metagenome; soil
64179
64093
-
Leu
CAG
[ENA]
¢þ
>WENV180274035
OBGG01000021
[OBGG] soil metagenome; soil
64300
64214
-
Leu
CAG
[ENA]
¢þ
>WENV180274034
OBGG01000021
[OBGG] soil metagenome; soil
64415
64329
-
Leu
CAG
[ENA]
¢þ
>WENV180274014
OBGG01000001
[OBGG] soil metagenome; soil
94987
95063
+
Val
GAC
[ENA]
¢þ
>WENV180274015
OBGG01000001
[OBGG] soil metagenome; soil
95068
95144
+
Val
GAC
[ENA]
¢þ
>WENV180274018
OBGG01000003
[OBGG] soil metagenome; soil
102568
102492
-
fMet
CAT
[ENA]
¢þ
>WENV180274022
OBGG01000008
[OBGG] soil metagenome; soil
105789
105702
-
Ser
TGA
[ENA]
¢þ
>WENV180274017
OBGG01000003
[OBGG] soil metagenome; soil
106437
106351
-
Leu
GAG
[ENA]
¢þ
>WENV180274020
OBGG01000006
[OBGG] soil metagenome; soil
131160
131233
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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