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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OBGH] soil metagenome; soil
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274106
OBGH01000447
[OBGH] soil metagenome; soil
7
82
+
Asn
GTT
[ENA]
¢þ
>WENV180274111
OBGH01000567
[OBGH] soil metagenome; soil
8
95
+
Ser
GGA
[ENA]
¢þ
>WENV180274122
OBGH01000732
[OBGH] soil metagenome; soil
76
152
+
Pro
TGG
[ENA]
¢þ
>WENV180274128
OBGH01001063
[OBGH] soil metagenome; soil
81
6
-
Ala
GGC
[ENA]
¢þ
>WENV180274129
OBGH01001071
[OBGH] soil metagenome; soil
88
2
-
Leu
CAG
[ENA]
¢þ
>WENV180274101
OBGH01000412
[OBGH] soil metagenome; soil
94
168
+
Sup
CTA
[ENA]
¢þ
>WENV180274119
OBGH01000704
[OBGH] soil metagenome; soil
104
18
-
Leu
CAG
[ENA]
¢þ
>WENV180274123
OBGH01000860
[OBGH] soil metagenome; soil
104
180
+
Ile
GAT
[ENA]
¢þ
>WENV180274116
OBGH01000664
[OBGH] soil metagenome; soil
137
213
+
Asp
GTC
[ENA]
¢þ
>WENV180274127
OBGH01000954
[OBGH] soil metagenome; soil
140
216
+
Pro
GGG
[ENA]
¢þ
>WENV180274097
OBGH01000408
[OBGH] soil metagenome; soil
194
269
+
Val
TAC
[ENA]
¢þ
>WENV180274125
OBGH01000863
[OBGH] soil metagenome; soil
207
282
+
Glu
TTC
[ENA]
¢þ
>WENV180274118
OBGH01000704
[OBGH] soil metagenome; soil
219
133
-
Leu
CAG
[ENA]
¢þ
>WENV180274117
OBGH01000664
[OBGH] soil metagenome; soil
222
297
+
Trp
CCA
[ENA]
¢þ
>WENV180274124
OBGH01000860
[OBGH] soil metagenome; soil
223
298
+
Ala
TGC
[ENA]
¢þ
>WENV180274098
OBGH01000408
[OBGH] soil metagenome; soil
272
347
+
Lys
TTT
[ENA]
¢þ
>WENV180274126
OBGH01000911
[OBGH] soil metagenome; soil
348
264
-
Tyr
GTA
[ENA]
¢þ
>WENV180274096
OBGH01000363
[OBGH] soil metagenome; soil
381
306
-
Thr
GGT
[ENA]
¢þ
>WENV180274095
OBGH01000363
[OBGH] soil metagenome; soil
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV180274099
OBGH01000408
[OBGH] soil metagenome; soil
494
569
+
Lys
TTT
[ENA]
¢þ
>WENV180274094
OBGH01000363
[OBGH] soil metagenome; soil
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV180274100
OBGH01000408
[OBGH] soil metagenome; soil
702
777
+
Lys
TTT
[ENA]
¢þ
>WENV180274093
OBGH01000363
[OBGH] soil metagenome; soil
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV180274120
OBGH01000731
[OBGH] soil metagenome; soil
812
888
+
Arg
CCG
[ENA]
¢þ
>WENV180274121
OBGH01000731
[OBGH] soil metagenome; soil
947
1022
+
His
GTG
[ENA]
¢þ
>WENV180274076
OBGH01000054
[OBGH] soil metagenome; soil
1010
1099
+
Ser
CGA
[ENA]
¢þ
>WENV180274103
OBGH01000437
[OBGH] soil metagenome; soil
1059
1134
+
Gly
GCC
[ENA]
¢þ
>WENV180274110
OBGH01000551
[OBGH] soil metagenome; soil
1115
1191
+
Arg
TCT
[ENA]
¢þ
>WENV180274104
OBGH01000437
[OBGH] soil metagenome; soil
1189
1262
+
Cys
GCA
[ENA]
¢þ
>WENV180274105
OBGH01000437
[OBGH] soil metagenome; soil
1275
1361
+
Leu
TAA
[ENA]
¢þ
>WENV180274107
OBGH01000463
[OBGH] soil metagenome; soil
1301
1226
-
Asn
GTT
[ENA]
¢þ
>WENV180274090
OBGH01000237
[OBGH] soil metagenome; soil
1421
1348
-
Gly
CCC
[ENA]
¢þ
>WENV180274112
OBGH01000590
[OBGH] soil metagenome; soil
1669
1745
+
Met
CAT
[ENA]
¢þ
>WENV180274113
OBGH01000590
[OBGH] soil metagenome; soil
1755
1839
+
Leu
TAG
[ENA]
¢þ
>WENV180274114
OBGH01000590
[OBGH] soil metagenome; soil
1863
1937
+
Gln
TTG
[ENA]
¢þ
>WENV180274115
OBGH01000590
[OBGH] soil metagenome; soil
1953
2029
+
Met
CAT
[ENA]
¢þ
>WENV180274089
OBGH01000236
[OBGH] soil metagenome; soil
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV180274078
OBGH01000087
[OBGH] soil metagenome; soil
2486
2410
-
Pro
CGG
[ENA]
¢þ
>WENV180274109
OBGH01000506
[OBGH] soil metagenome; soil
2647
2571
-
fMet
CAT
[ENA]
¢þ
>WENV180274102
OBGH01000413
[OBGH] soil metagenome; soil
2816
2892
+
Asp
GTC
[ENA]
¢þ
>WENV180274108
OBGH01000471
[OBGH] soil metagenome; soil
2982
2895
-
Ser
TGA
[ENA]
¢þ
>WENV180274091
OBGH01000262
[OBGH] soil metagenome; soil
3009
3085
+
Pro
GGG
[ENA]
¢þ
>WENV180274092
OBGH01000334
[OBGH] soil metagenome; soil
3205
3280
+
Thr
CGT
[ENA]
¢þ
>WENV180274083
OBGH01000112
[OBGH] soil metagenome; soil
3432
3507
+
Ile2
CAT
[ENA]
¢þ
>WENV180274082
OBGH01000105
[OBGH] soil metagenome; soil
3546
3460
-
Leu
GAG
[ENA]
¢þ
>WENV180274077
OBGH01000066
[OBGH] soil metagenome; soil
4557
4483
-
Arg
CCT
[ENA]
¢þ
>WENV180274086
OBGH01000170
[OBGH] soil metagenome; soil
6525
6431
-
SeC
TCA
[ENA]
¢þ
>WENV180274080
OBGH01000104
[OBGH] soil metagenome; soil
6596
6688
+
Ser
GCT
[ENA]
¢þ
>WENV180274081
OBGH01000104
[OBGH] soil metagenome; soil
6692
6768
+
Arg
ACG
[ENA]
¢þ
>WENV180274087
OBGH01000208
[OBGH] soil metagenome; soil
6770
6846
+
Val
GAC
[ENA]
¢þ
>WENV180274088
OBGH01000208
[OBGH] soil metagenome; soil
6851
6927
+
Val
GAC
[ENA]
¢þ
>WENV180274084
OBGH01000137
[OBGH] soil metagenome; soil
7771
7855
+
Leu
CAA
[ENA]
¢þ
>WENV180274079
OBGH01000100
[OBGH] soil metagenome; soil
8730
8655
-
Phe
GAA
[ENA]
¢þ
>WENV180274085
OBGH01000152
[OBGH] soil metagenome; soil
8911
8986
+
Gly
GCC
[ENA]
¢þ
>WENV180274075
OBGH01000005
[OBGH] soil metagenome; soil
26391
26310
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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