This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OBGI] soil metagenome; soil
HIT:
59 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180274179
OBGI01000663
[OBGI] soil metagenome; soil
19
94
+
Phe
GAA
[ENA]
¢þ
>WENV180274188
OBGI01001091
[OBGI] soil metagenome; soil
88
2
-
Leu
CAG
[ENA]
¢þ
>WENV180274159
OBGI01000300
[OBGI] soil metagenome; soil
89
163
+
Gln
CTG
[ENA]
¢þ
>WENV180274184
OBGI01000855
[OBGI] soil metagenome; soil
192
117
-
Ala
TGC
[ENA]
¢þ
>WENV180274160
OBGI01000300
[OBGI] soil metagenome; soil
201
275
+
Sup
CTA
[ENA]
¢þ
>WENV180274186
OBGI01000912
[OBGI] soil metagenome; soil
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV180274180
OBGI01000804
[OBGI] soil metagenome; soil
246
320
+
Pro
GGG
[ENA]
¢þ
>WENV180274181
OBGI01000842
[OBGI] soil metagenome; soil
246
322
+
Arg
ACG
[ENA]
¢þ
>WENV180274185
OBGI01000902
[OBGI] soil metagenome; soil
264
348
+
Tyr
GTA
[ENA]
¢þ
>WENV180274187
OBGI01000979
[OBGI] soil metagenome; soil
266
191
-
Lys
TTT
[ENA]
¢þ
>WENV180274183
OBGI01000855
[OBGI] soil metagenome; soil
311
235
-
Ile
GAT
[ENA]
¢þ
>WENV180274168
OBGI01000375
[OBGI] soil metagenome; soil
345
270
-
Thr
GGT
[ENA]
¢þ
>WENV180274182
OBGI01000842
[OBGI] soil metagenome; soil
385
461
+
Arg
ACG
[ENA]
¢þ
>WENV180274167
OBGI01000375
[OBGI] soil metagenome; soil
425
351
-
Gly
TCC
[ENA]
¢þ
>WENV180274173
OBGI01000579
[OBGI] soil metagenome; soil
451
357
-
SeC
TCA
[ENA]
¢þ
>WENV180274166
OBGI01000375
[OBGI] soil metagenome; soil
626
542
-
Tyr
GTA
[ENA]
¢þ
>WENV180274165
OBGI01000375
[OBGI] soil metagenome; soil
710
635
-
Thr
TGT
[ENA]
¢þ
>WENV180274174
OBGI01000614
[OBGI] soil metagenome; soil
966
891
-
Thr
CGT
[ENA]
¢þ
>WENV180274163
OBGI01000336
[OBGI] soil metagenome; soil
1003
1079
+
Val
GAC
[ENA]
¢þ
>WENV180274164
OBGI01000336
[OBGI] soil metagenome; soil
1084
1160
+
Val
GAC
[ENA]
¢þ
>WENV180274175
OBGI01000623
[OBGI] soil metagenome; soil
1172
1248
+
Met
CAT
[ENA]
¢þ
>WENV180274176
OBGI01000623
[OBGI] soil metagenome; soil
1258
1342
+
Leu
TAG
[ENA]
¢þ
>WENV180274171
OBGI01000389
[OBGI] soil metagenome; soil
1325
1400
+
Ile2
CAT
[ENA]
¢þ
>WENV180274177
OBGI01000623
[OBGI] soil metagenome; soil
1366
1440
+
Gln
TTG
[ENA]
¢þ
>WENV180274178
OBGI01000623
[OBGI] soil metagenome; soil
1475
1549
+
Gln
TTG
[ENA]
¢þ
>WENV180274151
OBGI01000209
[OBGI] soil metagenome; soil
1831
1747
-
Leu
CAA
[ENA]
¢þ
>WENV180274153
OBGI01000235
[OBGI] soil metagenome; soil
2384
2459
+
Asn
GTT
[ENA]
¢þ
>WENV180274149
OBGI01000178
[OBGI] soil metagenome; soil
2390
2303
-
Ser
TGA
[ENA]
¢þ
>WENV180274156
OBGI01000274
[OBGI] soil metagenome; soil
2554
2479
-
Ala
GGC
[ENA]
¢þ
>WENV180274155
OBGI01000274
[OBGI] soil metagenome; soil
2669
2594
-
Ala
GGC
[ENA]
¢þ
>WENV180274172
OBGI01000406
[OBGI] soil metagenome; soil
3661
3574
-
Ser
GGA
[ENA]
¢þ
>WENV180274130
OBGI01000004
[OBGI] soil metagenome; soil
3661
3736
+
Asn
GTT
[ENA]
¢þ
>WENV180274170
OBGI01000382
[OBGI] soil metagenome; soil
3842
3756
-
Leu
TAA
[ENA]
¢þ
>WENV180274169
OBGI01000382
[OBGI] soil metagenome; soil
3928
3855
-
Cys
GCA
[ENA]
¢þ
>WENV180274144
OBGI01000105
[OBGI] soil metagenome; soil
4587
4511
-
fMet
CAT
[ENA]
¢þ
>WENV180274162
OBGI01000324
[OBGI] soil metagenome; soil
4796
4707
-
Ser
CGA
[ENA]
¢þ
>WENV180274161
OBGI01000319
[OBGI] soil metagenome; soil
4804
4879
+
Gly
GCC
[ENA]
¢þ
>WENV180274152
OBGI01000217
[OBGI] soil metagenome; soil
5206
5279
+
Gly
CCC
[ENA]
¢þ
>WENV180274158
OBGI01000277
[OBGI] soil metagenome; soil
5288
5213
-
Trp
CCA
[ENA]
¢þ
>WENV180274154
OBGI01000274
[OBGI] soil metagenome; soil
5369
5444
+
Val
TAC
[ENA]
¢þ
>WENV180274157
OBGI01000277
[OBGI] soil metagenome; soil
5373
5297
-
Asp
GTC
[ENA]
¢þ
>WENV180274140
OBGI01000104
[OBGI] soil metagenome; soil
6764
6840
+
fMet
CAT
[ENA]
¢þ
>WENV180274150
OBGI01000190
[OBGI] soil metagenome; soil
7428
7352
-
fMet
CAT
[ENA]
¢þ
>WENV180274146
OBGI01000106
[OBGI] soil metagenome; soil
8324
8249
-
Gly
GCC
[ENA]
¢þ
>WENV180274147
OBGI01000155
[OBGI] soil metagenome; soil
8332
8424
+
Ser
GCT
[ENA]
¢þ
>WENV180274148
OBGI01000155
[OBGI] soil metagenome; soil
8428
8504
+
Arg
ACG
[ENA]
¢þ
>WENV180274145
OBGI01000106
[OBGI] soil metagenome; soil
8435
8360
-
Gly
GCC
[ENA]
¢þ
>WENV180274143
OBGI01000105
[OBGI] soil metagenome; soil
8456
8370
-
Leu
GAG
[ENA]
¢þ
>WENV180274141
OBGI01000104
[OBGI] soil metagenome; soil
8781
8856
+
Ile
GAT
[ENA]
¢þ
>WENV180274142
OBGI01000104
[OBGI] soil metagenome; soil
8911
8985
+
Ala
TGC
[ENA]
¢þ
>WENV180274138
OBGI01000049
[OBGI] soil metagenome; soil
10831
10905
+
Arg
CCT
[ENA]
¢þ
>WENV180274139
OBGI01000080
[OBGI] soil metagenome; soil
11698
11774
+
Arg
TCT
[ENA]
¢þ
>WENV180274137
OBGI01000042
[OBGI] soil metagenome; soil
14098
14022
-
Pro
TGG
[ENA]
¢þ
>WENV180274136
OBGI01000042
[OBGI] soil metagenome; soil
14227
14141
-
Leu
CAG
[ENA]
¢þ
>WENV180274135
OBGI01000042
[OBGI] soil metagenome; soil
14323
14248
-
His
GTG
[ENA]
¢þ
>WENV180274134
OBGI01000042
[OBGI] soil metagenome; soil
14458
14382
-
Arg
CCG
[ENA]
¢þ
>WENV180274133
OBGI01000035
[OBGI] soil metagenome; soil
17525
17450
-
Lys
TTT
[ENA]
¢þ
>WENV180274132
OBGI01000017
[OBGI] soil metagenome; soil
20599
20675
+
Pro
GGG
[ENA]
¢þ
>WENV180274131
OBGI01000009
[OBGI] soil metagenome; soil
20868
20792
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK